Wall clock time and date at job start Tue Mar 31 2020 05:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46497 * 2 1 4 4 C 1.50699 * 109.47358 * 119.99841 * 2 1 3 5 5 H 1.07993 * 119.99984 * 120.00054 * 4 2 1 6 6 C 1.37878 * 119.99936 * 300.00100 * 4 2 1 7 7 N 1.31516 * 120.00104 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99811 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46958 * 60.00347 * 8 6 4 10 10 H 1.48501 * 109.46637 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47122 * 299.99804 * 8 6 4 12 12 N 1.46497 * 109.46999 * 240.00176 * 2 1 3 13 13 C 1.46498 * 120.00019 * 299.99638 * 12 2 1 14 14 C 1.34773 * 120.00036 * 119.99822 * 12 2 1 15 15 O 1.21591 * 120.00150 * 359.97438 * 14 12 2 16 16 N 1.34779 * 120.00045 * 179.97438 * 14 12 2 17 17 C 1.39939 * 120.00138 * 184.55321 * 16 14 12 18 18 C 1.39360 * 119.82756 * 324.83014 * 17 16 14 19 19 C 1.36526 * 120.51303 * 180.02562 * 18 17 16 20 20 C 1.39814 * 119.92704 * 359.97438 * 19 18 17 21 21 N 1.35706 * 133.60160 * 180.28803 * 20 19 18 22 22 C 1.30798 * 108.79029 * 180.09825 * 21 20 19 23 23 C 1.47895 * 124.96751 * 179.89052 * 22 21 20 24 24 C 1.39493 * 119.74068 * 359.70215 * 23 22 21 25 25 C 1.38420 * 119.05141 * 179.97438 * 24 23 22 26 26 C 1.38764 * 118.51614 * 0.02562 * 25 24 23 27 27 C 1.38374 * 119.39092 * 0.27634 * 26 25 24 28 28 N 1.31657 * 120.91004 * 359.44618 * 27 26 25 29 29 O 1.34707 * 110.05931 * 359.63428 * 22 21 20 30 30 C 1.35106 * 108.09164 * 0.22297 * 29 22 21 31 31 C 1.38572 * 133.83023 * 180.02562 * 30 29 22 32 32 H 1.09003 * 109.46799 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47106 * 299.99751 * 1 2 3 34 34 H 1.08988 * 109.47517 * 60.00146 * 1 2 3 35 35 H 0.97005 * 119.99805 * 179.97438 * 7 6 4 36 36 H 1.09009 * 109.47376 * 270.00618 * 13 12 2 37 37 H 1.09000 * 109.47363 * 29.99968 * 13 12 2 38 38 H 1.08996 * 109.47486 * 150.00331 * 13 12 2 39 39 H 0.97005 * 119.99638 * 4.55125 * 16 14 12 40 40 H 1.07999 * 119.74055 * 0.02562 * 18 17 16 41 41 H 1.08000 * 120.03468 * 180.02562 * 19 18 17 42 42 H 1.07998 * 120.47352 * 0.02562 * 24 23 22 43 43 H 1.07997 * 120.74246 * 180.02562 * 25 24 23 44 44 H 1.07994 * 120.30328 * 180.02562 * 26 25 24 45 45 H 1.08000 * 119.54147 * 179.72840 * 27 26 25 46 46 H 1.07994 * 120.14719 * 359.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3215 -1.1203 4.0080 9 1 3.8065 -1.1207 4.0081 10 1 1.8261 -0.4205 5.2204 11 1 1.8260 -2.5201 4.0078 12 7 2.0183 -0.6906 -1.1962 13 6 1.6645 -2.0931 -1.4280 14 6 2.7931 -0.0356 -2.0833 15 8 3.0865 1.1287 -1.8912 16 7 3.2428 -0.6710 -3.1836 17 6 4.1240 -0.0219 -4.0555 18 6 3.9984 1.3487 -4.2746 19 6 4.8501 1.9960 -5.1227 20 6 5.8580 1.2823 -5.7782 21 7 6.8353 1.6318 -6.6524 22 6 7.5208 0.5633 -6.9674 23 6 8.6694 0.5371 -7.8986 24 6 9.0863 1.7161 -8.5166 25 6 10.1632 1.6753 -9.3852 26 6 10.7884 0.4568 -9.6085 27 6 10.3184 -0.6753 -8.9665 28 7 9.2952 -0.6089 -8.1407 29 8 7.0309 -0.5087 -6.3152 30 6 5.9883 -0.0998 -5.5595 31 6 5.1176 -0.7450 -4.6959 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5137 -0.8899 35 1 0.7082 1.1609 3.4845 36 1 2.4158 -2.7377 -0.9716 37 1 0.6905 -2.3002 -0.9846 38 1 1.6238 -2.2852 -2.5001 39 1 2.9555 -1.5784 -3.3710 40 1 3.2212 1.9029 -3.7695 41 1 4.7460 3.0584 -5.2865 42 1 8.5765 2.6476 -8.3195 43 1 10.5091 2.5718 -9.8782 44 1 11.6316 0.3919 -10.2802 45 1 10.8004 -1.6257 -9.1419 46 1 5.2123 -1.8069 -4.5236 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096495684.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:07 Heat of formation + Delta-G solvation = 72.885582 kcal Electronic energy + Delta-G solvation = -30990.075713 eV Core-core repulsion = 26654.445732 eV Total energy + Delta-G solvation = -4335.629980 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.148 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.26867 -40.53217 -40.23640 -37.95670 -35.61775 -35.06777 -34.14444 -33.12376 -32.80188 -32.01310 -30.69637 -29.55738 -28.16685 -26.31884 -25.27254 -25.06636 -24.18311 -23.27300 -22.49531 -21.78921 -21.18531 -19.45303 -18.59782 -17.84574 -17.71436 -17.10570 -16.85672 -16.56136 -16.28376 -16.19591 -15.56696 -15.21814 -14.97624 -14.48796 -14.42180 -14.33771 -14.06725 -13.89640 -13.65784 -13.34536 -13.00981 -12.86462 -12.67740 -12.41676 -12.37635 -11.82104 -11.67069 -11.60836 -11.59156 -11.09587 -10.86972 -10.75929 -10.67119 -10.49540 -10.32161 -10.21294 -10.18477 -10.07581 -9.54522 -9.40778 -9.21878 -8.79135 -8.46524 -7.95326 -7.60749 -6.10774 -4.18791 -0.06542 0.73937 0.95981 1.27876 2.13816 2.30739 2.95212 3.23188 3.26359 3.31791 3.34088 3.35602 3.51274 3.84396 4.18861 4.27925 4.33443 4.39897 4.45479 4.50088 4.53274 4.70081 4.97739 5.01405 5.10479 5.20440 5.26048 5.30553 5.44164 5.50239 5.61191 5.76707 5.86791 5.90616 6.01166 6.06736 6.09154 6.15907 6.25683 6.47896 6.64029 6.73937 6.86687 6.93309 7.05539 7.29004 7.37133 7.50169 7.63158 7.72317 7.99448 8.15003 8.50229 8.80543 9.05294 9.47890 10.94485 Molecular weight = 366.15amu Principal moments of inertia in cm(-1) A = 0.020908 B = 0.001673 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.890237 B =16731.991384 C =17019.834656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.272 3.728 3 H 0.067 0.933 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.600 5.600 13 C 0.085 3.915 14 C 0.697 3.303 15 O -0.574 6.574 16 N -0.691 5.691 17 C 0.226 3.774 18 C -0.116 4.116 19 C -0.036 4.036 20 C -0.005 4.005 21 N -0.445 5.445 22 C 0.270 3.730 23 C 0.196 3.804 24 C -0.117 4.117 25 C -0.075 4.075 26 C -0.158 4.158 27 C 0.105 3.895 28 N -0.461 5.461 29 O -0.192 6.192 30 C 0.043 3.957 31 C -0.145 4.145 32 H 0.030 0.970 33 H 0.095 0.905 34 H 0.013 0.987 35 H 0.264 0.736 36 H 0.051 0.949 37 H 0.080 0.920 38 H 0.045 0.955 39 H 0.406 0.594 40 H 0.161 0.839 41 H 0.141 0.859 42 H 0.153 0.847 43 H 0.146 0.854 44 H 0.143 0.857 45 H 0.165 0.835 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.377 -2.522 -24.658 28.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.172 3.828 3 H 0.085 0.915 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.203 1.203 12 N -0.334 5.334 13 C -0.059 4.059 14 C 0.399 3.601 15 O -0.451 6.451 16 N -0.340 5.340 17 C 0.128 3.872 18 C -0.137 4.137 19 C -0.056 4.056 20 C -0.119 4.119 21 N -0.175 5.175 22 C 0.061 3.939 23 C 0.059 3.941 24 C -0.138 4.138 25 C -0.101 4.101 26 C -0.178 4.178 27 C -0.054 4.054 28 N -0.171 5.171 29 O -0.082 6.082 30 C -0.009 4.009 31 C -0.168 4.168 32 H 0.049 0.951 33 H 0.114 0.886 34 H 0.032 0.968 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.064 0.936 39 H 0.244 0.756 40 H 0.178 0.822 41 H 0.158 0.842 42 H 0.171 0.829 43 H 0.164 0.836 44 H 0.160 0.840 45 H 0.183 0.817 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 13.192 -1.759 -23.992 27.436 hybrid contribution 0.439 -1.169 0.688 1.425 sum 13.631 -2.928 -23.304 27.156 Atomic orbital electron populations 1.22123 0.98083 0.99431 1.01015 1.18950 0.90728 0.94364 0.78781 0.91548 1.21269 1.32016 1.13116 0.90236 0.92327 1.24879 0.94916 0.94976 0.98944 1.69862 1.36167 1.22518 1.23953 0.86538 0.79260 0.79532 0.81947 1.20254 1.21143 1.20256 1.47645 1.50438 1.11639 1.23658 1.21546 1.02385 0.83385 0.98598 1.15951 0.79734 0.85101 0.79285 1.90878 1.62362 1.15143 1.76765 1.42994 1.48214 1.18893 1.23939 1.17168 0.88688 0.91887 0.89471 1.21171 1.01449 0.93503 0.97606 1.19989 0.91473 1.00142 0.94000 1.19741 0.99006 0.91981 1.01161 1.70564 1.06022 1.27035 1.13913 1.23073 0.95675 0.79801 0.95315 1.17832 0.91519 0.90384 0.94344 1.22048 0.97014 0.98922 0.95831 1.21619 0.93909 0.98764 0.95792 1.22394 1.01118 0.93610 1.00697 1.22793 0.91848 0.99155 0.91596 1.67562 1.07876 1.26937 1.14718 1.84605 1.38954 1.36225 1.48371 1.19875 0.90402 0.94146 0.96468 1.19271 0.94854 1.01035 1.01623 0.95072 0.88610 0.96837 0.92564 0.93005 0.90172 0.93604 0.75586 0.82153 0.84163 0.82911 0.83638 0.83962 0.81739 0.84354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 8.95 37.16 0.33 -3.06 16 2 C 0.27 6.69 2.64 -69.08 -0.18 6.51 16 3 H 0.07 1.90 6.90 -51.93 -0.36 1.54 16 4 C -0.53 -13.92 8.37 -34.44 -0.29 -14.21 16 5 H 0.06 1.53 7.65 -52.49 -0.40 1.13 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.59 11.32 55.43 0.63 -23.96 16 8 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 N -0.60 -12.15 2.75 -181.01 -0.50 -12.65 16 13 C 0.08 1.31 9.48 59.85 0.57 1.88 16 14 C 0.70 13.89 8.12 -86.92 -0.71 13.19 16 15 O -0.57 -13.48 13.08 5.29 0.07 -13.41 16 16 N -0.69 -10.48 5.21 -14.18 -0.07 -10.55 16 17 C 0.23 3.41 6.30 -83.62 -0.53 2.88 16 18 C -0.12 -1.79 8.61 -39.78 -0.34 -2.13 16 19 C -0.04 -0.52 10.05 -39.61 -0.40 -0.91 16 20 C 0.00 -0.07 7.23 -84.70 -0.61 -0.68 16 21 N -0.44 -6.51 10.86 -9.26 -0.10 -6.61 16 22 C 0.27 3.82 7.94 -14.04 -0.11 3.71 16 23 C 0.20 2.26 6.75 -83.03 -0.56 1.69 16 24 C -0.12 -0.99 9.71 -39.05 -0.38 -1.36 16 25 C -0.08 -0.41 10.17 -39.32 -0.40 -0.81 16 26 C -0.16 -0.78 10.11 -39.34 -0.40 -1.18 16 27 C 0.11 0.74 11.18 -17.58 -0.20 0.55 16 28 N -0.46 -5.12 10.29 -9.84 -0.10 -5.22 16 29 O -0.19 -2.94 10.78 2.33 0.03 -2.91 16 30 C 0.04 0.65 7.42 -38.59 -0.29 0.36 16 31 C -0.15 -2.01 9.98 -39.33 -0.39 -2.40 16 32 H 0.03 0.65 6.66 -51.93 -0.35 0.30 16 33 H 0.10 2.43 6.07 -51.93 -0.32 2.11 16 34 H 0.01 0.27 8.14 -51.94 -0.42 -0.15 16 35 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 36 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 37 H 0.08 1.25 6.43 -51.93 -0.33 0.92 16 38 H 0.05 0.52 6.30 -51.93 -0.33 0.19 16 39 H 0.41 4.79 6.52 -40.82 -0.27 4.53 16 40 H 0.16 2.70 6.20 -52.49 -0.33 2.37 16 41 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 42 H 0.15 1.18 7.79 -52.49 -0.41 0.78 16 43 H 0.15 0.36 8.06 -52.49 -0.42 -0.06 16 44 H 0.14 0.25 8.06 -52.49 -0.42 -0.17 16 45 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 46 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 388.82 15.07 5.86 5.86 Total: -1.00 -33.54 388.82 -9.36 -42.90 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -5.18 Total: 5.08 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: -4.97 Total: 5.67 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: -0.15 Total: -58.98 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.09 Total: -16.32 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.54 -9.36 -42.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096495684.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.785 kcal (2) G-P(sol) polarization free energy of solvation -33.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds