Wall clock time and date at job start Tue Mar 31 2020 05:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46497 * 2 1 4 4 C 1.50699 * 109.47358 * 119.99841 * 2 1 3 5 5 H 1.07993 * 119.99984 * 120.00054 * 4 2 1 6 6 C 1.37878 * 119.99936 * 300.00100 * 4 2 1 7 7 N 1.31516 * 120.00104 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99811 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46958 * 60.00347 * 8 6 4 10 10 H 1.48501 * 109.46637 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47122 * 299.99804 * 8 6 4 12 12 N 1.46497 * 109.46999 * 240.00176 * 2 1 3 13 13 C 1.46498 * 120.00019 * 299.99638 * 12 2 1 14 14 C 1.34773 * 120.00036 * 119.99822 * 12 2 1 15 15 O 1.21591 * 120.00150 * 359.97438 * 14 12 2 16 16 N 1.34779 * 120.00045 * 179.97438 * 14 12 2 17 17 C 1.39939 * 120.00138 * 184.55321 * 16 14 12 18 18 C 1.39360 * 119.82756 * 324.83014 * 17 16 14 19 19 C 1.36526 * 120.51303 * 180.02562 * 18 17 16 20 20 C 1.39814 * 119.92704 * 359.97438 * 19 18 17 21 21 N 1.35706 * 133.60160 * 180.28803 * 20 19 18 22 22 C 1.30798 * 108.79029 * 180.09825 * 21 20 19 23 23 C 1.47895 * 124.96751 * 179.89052 * 22 21 20 24 24 C 1.39493 * 119.74068 * 359.70215 * 23 22 21 25 25 C 1.38420 * 119.05141 * 179.97438 * 24 23 22 26 26 C 1.38764 * 118.51614 * 0.02562 * 25 24 23 27 27 C 1.38374 * 119.39092 * 0.27634 * 26 25 24 28 28 N 1.31657 * 120.91004 * 359.44618 * 27 26 25 29 29 O 1.34707 * 110.05931 * 359.63428 * 22 21 20 30 30 C 1.35106 * 108.09164 * 0.22297 * 29 22 21 31 31 C 1.38572 * 133.83023 * 180.02562 * 30 29 22 32 32 H 1.09003 * 109.46799 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47106 * 299.99751 * 1 2 3 34 34 H 1.08988 * 109.47517 * 60.00146 * 1 2 3 35 35 H 0.97005 * 119.99805 * 179.97438 * 7 6 4 36 36 H 1.09009 * 109.47376 * 270.00618 * 13 12 2 37 37 H 1.09000 * 109.47363 * 29.99968 * 13 12 2 38 38 H 1.08996 * 109.47486 * 150.00331 * 13 12 2 39 39 H 0.97005 * 119.99638 * 4.55125 * 16 14 12 40 40 H 1.07999 * 119.74055 * 0.02562 * 18 17 16 41 41 H 1.08000 * 120.03468 * 180.02562 * 19 18 17 42 42 H 1.07998 * 120.47352 * 0.02562 * 24 23 22 43 43 H 1.07997 * 120.74246 * 180.02562 * 25 24 23 44 44 H 1.07994 * 120.30328 * 180.02562 * 26 25 24 45 45 H 1.08000 * 119.54147 * 179.72840 * 27 26 25 46 46 H 1.07994 * 120.14719 * 359.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3215 -1.1203 4.0080 9 1 3.8065 -1.1207 4.0081 10 1 1.8261 -0.4205 5.2204 11 1 1.8260 -2.5201 4.0078 12 7 2.0183 -0.6906 -1.1962 13 6 1.6645 -2.0931 -1.4280 14 6 2.7931 -0.0356 -2.0833 15 8 3.0865 1.1287 -1.8912 16 7 3.2428 -0.6710 -3.1836 17 6 4.1240 -0.0219 -4.0555 18 6 3.9984 1.3487 -4.2746 19 6 4.8501 1.9960 -5.1227 20 6 5.8580 1.2823 -5.7782 21 7 6.8353 1.6318 -6.6524 22 6 7.5208 0.5633 -6.9674 23 6 8.6694 0.5371 -7.8986 24 6 9.0863 1.7161 -8.5166 25 6 10.1632 1.6753 -9.3852 26 6 10.7884 0.4568 -9.6085 27 6 10.3184 -0.6753 -8.9665 28 7 9.2952 -0.6089 -8.1407 29 8 7.0309 -0.5087 -6.3152 30 6 5.9883 -0.0998 -5.5595 31 6 5.1176 -0.7450 -4.6959 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5137 -0.8899 35 1 0.7082 1.1609 3.4845 36 1 2.4158 -2.7377 -0.9716 37 1 0.6905 -2.3002 -0.9846 38 1 1.6238 -2.2852 -2.5001 39 1 2.9555 -1.5784 -3.3710 40 1 3.2212 1.9029 -3.7695 41 1 4.7460 3.0584 -5.2865 42 1 8.5765 2.6476 -8.3195 43 1 10.5091 2.5718 -9.8782 44 1 11.6316 0.3919 -10.2802 45 1 10.8004 -1.6257 -9.1419 46 1 5.2123 -1.8069 -4.5236 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096495684.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:06 Heat of formation + Delta-G solvation = 49.971518 kcal Electronic energy + Delta-G solvation = -30991.069341 eV Core-core repulsion = 26654.445732 eV Total energy + Delta-G solvation = -4336.623609 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.148 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.37321 -41.72843 -41.07526 -39.26269 -37.23056 -36.32543 -35.46952 -34.57157 -33.66642 -32.82113 -31.86797 -31.23879 -29.32117 -27.69686 -27.25848 -25.98417 -24.99553 -24.28308 -23.63920 -22.94074 -22.47354 -21.00330 -19.70574 -19.17979 -18.78943 -18.43245 -17.98117 -17.94862 -17.22785 -17.05604 -16.84481 -16.56626 -16.39308 -16.12256 -15.28125 -15.16089 -15.11196 -15.00019 -14.95932 -14.44919 -14.28745 -14.10232 -14.09507 -13.68371 -13.45574 -13.07813 -12.99844 -12.91166 -12.87628 -12.71774 -12.69908 -12.59559 -12.16193 -12.11575 -11.77065 -11.42220 -11.18361 -11.07465 -10.97111 -10.67642 -10.50485 -10.29970 -9.94580 -9.44128 -8.90444 -8.13163 -6.28953 -0.92597 0.03924 0.10097 0.24777 1.05889 1.30697 1.42562 1.44628 1.51581 1.69783 2.07287 2.25623 2.42330 2.55859 2.77648 2.98115 3.15156 3.34412 3.53924 3.71061 3.86168 3.89755 3.99241 4.01944 4.11889 4.19347 4.31625 4.40947 4.59947 4.62614 4.73313 4.76931 4.77622 4.87804 4.91483 4.95872 5.02129 5.06378 5.07622 5.11842 5.17820 5.27229 5.42393 5.53567 5.60503 5.65417 5.67186 5.96754 6.14415 6.20725 6.32424 6.77386 6.77714 7.00146 7.36543 7.54997 8.90692 Molecular weight = 366.15amu Principal moments of inertia in cm(-1) A = 0.020908 B = 0.001673 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.890237 B =16731.991384 C =17019.834656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.277 3.723 3 H 0.015 0.985 4 C -0.538 4.538 5 H 0.060 0.940 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.962 3.038 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.262 1.262 12 N -0.607 5.607 13 C 0.079 3.921 14 C 0.694 3.306 15 O -0.619 6.619 16 N -0.669 5.669 17 C 0.208 3.792 18 C -0.124 4.124 19 C -0.036 4.036 20 C -0.014 4.014 21 N -0.462 5.462 22 C 0.278 3.722 23 C 0.153 3.847 24 C -0.118 4.118 25 C -0.070 4.070 26 C -0.134 4.134 27 C 0.094 3.906 28 N -0.496 5.496 29 O -0.203 6.203 30 C 0.022 3.978 31 C -0.126 4.126 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.023 0.977 35 H 0.264 0.736 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.424 0.576 40 H 0.143 0.857 41 H 0.157 0.843 42 H 0.152 0.848 43 H 0.183 0.817 44 H 0.186 0.814 45 H 0.192 0.808 46 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.667 -4.338 -26.996 31.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.175 3.825 3 H 0.033 0.967 4 C -0.577 4.577 5 H 0.078 0.922 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.788 3.212 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.187 1.187 12 N -0.341 5.341 13 C -0.063 4.063 14 C 0.396 3.604 15 O -0.499 6.499 16 N -0.320 5.320 17 C 0.110 3.890 18 C -0.146 4.146 19 C -0.056 4.056 20 C -0.128 4.128 21 N -0.193 5.193 22 C 0.069 3.931 23 C 0.018 3.982 24 C -0.139 4.139 25 C -0.096 4.096 26 C -0.154 4.154 27 C -0.065 4.065 28 N -0.207 5.207 29 O -0.094 6.094 30 C -0.029 4.029 31 C -0.148 4.148 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.042 0.958 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.265 0.735 40 H 0.161 0.839 41 H 0.175 0.825 42 H 0.170 0.830 43 H 0.200 0.800 44 H 0.203 0.797 45 H 0.209 0.791 46 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 15.468 -3.626 -26.373 30.788 hybrid contribution -0.032 -0.585 1.168 1.307 sum 15.436 -4.210 -25.205 29.854 Atomic orbital electron populations 1.21899 0.96866 1.00282 1.00143 1.18516 0.91566 0.92113 0.80306 0.96729 1.21542 1.31921 1.13111 0.91124 0.92211 1.25682 0.95137 0.95658 1.01851 1.70006 1.37160 1.23756 1.24455 0.85552 0.78251 0.79053 0.78386 1.20603 1.20980 1.18712 1.47471 1.50637 1.13400 1.22552 1.21822 1.02375 0.80402 1.01710 1.16066 0.79535 0.84658 0.80096 1.90852 1.63828 1.17275 1.77942 1.42545 1.47736 1.19324 1.22438 1.17191 0.89590 0.91902 0.90293 1.21067 1.01484 0.93987 0.98018 1.20084 0.90998 1.00943 0.93560 1.19982 0.99185 0.92372 1.01214 1.70572 1.06588 1.27350 1.14765 1.23912 0.95623 0.79157 0.94409 1.17916 0.92237 0.91940 0.96115 1.22202 0.97872 0.97819 0.96011 1.22098 0.92388 1.00575 0.94508 1.22894 1.00957 0.92299 0.99210 1.23407 0.90912 1.01343 0.90858 1.67464 1.09524 1.27239 1.16472 1.84601 1.39099 1.36987 1.48687 1.20099 0.91054 0.94415 0.97321 1.19391 0.93380 1.02067 0.99992 0.93203 0.91288 0.95840 0.92646 0.92385 0.90254 0.89169 0.73451 0.83942 0.82513 0.82985 0.79986 0.79707 0.79094 0.81702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.20 8.95 71.98 0.64 -5.56 16 2 C 0.28 14.04 2.64 44.25 0.12 14.16 16 3 H 0.01 0.89 6.90 -2.39 -0.02 0.88 16 4 C -0.54 -28.75 8.37 25.60 0.21 -28.54 16 5 H 0.06 3.10 7.65 -2.91 -0.02 3.08 16 6 C 0.02 0.90 5.30 84.65 0.45 1.35 16 7 N -0.92 -52.06 11.32 21.45 0.24 -51.82 16 8 Si 0.96 42.84 29.54 68.60 2.03 44.87 16 9 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 12 N -0.61 -24.65 2.75 -844.84 -2.33 -26.97 16 13 C 0.08 2.29 9.48 127.77 1.21 3.50 16 14 C 0.69 28.14 8.12 179.05 1.45 29.59 16 15 O -0.62 -30.52 13.08 -4.00 -0.05 -30.57 16 16 N -0.67 -19.90 5.21 -317.02 -1.65 -21.55 16 17 C 0.21 6.27 6.30 38.20 0.24 6.52 16 18 C -0.12 -4.00 8.61 22.14 0.19 -3.81 16 19 C -0.04 -1.07 10.05 22.25 0.22 -0.85 16 20 C -0.01 -0.44 7.23 39.49 0.29 -0.15 16 21 N -0.46 -13.91 10.86 -297.33 -3.23 -17.13 16 22 C 0.28 8.06 7.94 87.41 0.69 8.75 16 23 C 0.15 3.50 6.75 41.86 0.28 3.78 16 24 C -0.12 -1.84 9.71 22.62 0.22 -1.62 16 25 C -0.07 -0.53 10.17 22.44 0.23 -0.30 16 26 C -0.13 -0.76 10.11 22.43 0.23 -0.53 16 27 C 0.09 1.09 11.18 84.75 0.95 2.03 16 28 N -0.50 -10.63 10.29 -185.03 -1.90 -12.53 16 29 O -0.20 -6.34 10.78 -14.56 -0.16 -6.50 16 30 C 0.02 0.69 7.42 22.91 0.17 0.86 16 31 C -0.13 -3.42 9.98 22.43 0.22 -3.20 16 32 H 0.05 2.08 6.66 -2.39 -0.02 2.06 16 33 H 0.07 3.60 6.07 -2.39 -0.01 3.59 16 34 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.26 14.34 8.31 -92.70 -0.77 13.57 16 36 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.08 2.32 6.43 -2.39 -0.02 2.30 16 38 H 0.09 1.77 6.30 -2.39 -0.02 1.76 16 39 H 0.42 9.11 6.52 -92.70 -0.60 8.50 16 40 H 0.14 5.14 6.20 -2.91 -0.02 5.12 16 41 H 0.16 3.90 8.06 -2.91 -0.02 3.88 16 42 H 0.15 2.28 7.79 -2.91 -0.02 2.26 16 43 H 0.18 0.02 8.06 -2.91 -0.02 0.00 16 44 H 0.19 -0.49 8.06 -2.91 -0.02 -0.51 16 45 H 0.19 0.95 8.06 -2.91 -0.02 0.93 16 46 H 0.17 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -78.15 388.82 1.42 -76.73 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.45 Total: 19.52 kcal Atomic # 6 Polarization: 17.95 SS G_CDS: 8.02 Total: 25.97 kcal Atomic # 7 Polarization: -121.15 SS G_CDS: -8.87 Total: -130.01 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -0.21 Total: -37.07 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -78.15 1.42 -76.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096495684.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.701 kcal (2) G-P(sol) polarization free energy of solvation -78.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds