Wall clock time and date at job start Tue Mar 31 2020 05:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47250 * 2 1 4 4 C 1.50704 * 109.46881 * 240.00179 * 2 1 3 5 5 H 1.07998 * 119.99638 * 240.00188 * 4 2 1 6 6 C 1.37881 * 119.99968 * 59.99965 * 4 2 1 7 7 N 1.31514 * 119.99835 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99751 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46952 * 90.00308 * 8 6 4 10 10 H 1.48503 * 109.46917 * 209.99762 * 8 6 4 11 11 H 1.48497 * 109.47328 * 329.99889 * 8 6 4 12 12 N 1.46503 * 109.47140 * 120.00169 * 2 1 3 13 13 C 1.46499 * 119.99854 * 59.99822 * 12 2 1 14 14 C 1.34772 * 120.00096 * 239.99768 * 12 2 1 15 15 O 1.21592 * 119.99767 * 0.02562 * 14 12 2 16 16 N 1.34778 * 119.99924 * 180.02562 * 14 12 2 17 17 C 1.39945 * 119.99662 * 184.55368 * 16 14 12 18 18 C 1.39356 * 119.82594 * 324.84472 * 17 16 14 19 19 C 1.36532 * 120.50706 * 179.97438 * 18 17 16 20 20 C 1.39805 * 119.93023 * 0.02562 * 19 18 17 21 21 N 1.35713 * 133.60545 * 180.35552 * 20 19 18 22 22 C 1.30790 * 108.79711 * 180.09387 * 21 20 19 23 23 C 1.47886 * 124.97458 * 179.83481 * 22 21 20 24 24 C 1.39488 * 119.73811 * 359.69989 * 23 22 21 25 25 C 1.38425 * 119.05146 * 180.02562 * 24 23 22 26 26 C 1.38763 * 118.51651 * 359.97438 * 25 24 23 27 27 C 1.38371 * 119.38786 * 0.25869 * 26 25 24 28 28 N 1.31652 * 120.91723 * 359.46919 * 27 26 25 29 29 O 1.34715 * 110.05524 * 359.57070 * 22 21 20 30 30 C 1.35108 * 108.08984 * 0.26466 * 29 22 21 31 31 C 1.38569 * 133.82890 * 180.02562 * 30 29 22 32 32 H 1.09003 * 109.47236 * 59.99560 * 1 2 3 33 33 H 1.08994 * 109.47250 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.46732 * 299.99914 * 1 2 3 35 35 H 0.96998 * 120.00026 * 179.97438 * 7 6 4 36 36 H 1.09000 * 109.47224 * 270.00257 * 13 12 2 37 37 H 1.08999 * 109.47201 * 29.99888 * 13 12 2 38 38 H 1.09000 * 109.47399 * 149.99507 * 13 12 2 39 39 H 0.96999 * 120.00203 * 4.54661 * 16 14 12 40 40 H 1.07999 * 119.74488 * 359.97438 * 18 17 16 41 41 H 1.08001 * 120.03243 * 180.02562 * 19 18 17 42 42 H 1.08000 * 120.47722 * 0.04018 * 24 23 22 43 43 H 1.07999 * 120.74147 * 180.02562 * 25 24 23 44 44 H 1.07993 * 120.30276 * 179.97438 * 26 25 24 45 45 H 1.08005 * 119.53976 * 179.74217 * 27 26 25 46 46 H 1.08003 * 120.14732 * 359.95746 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9426 0.8297 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.3446 -2.1614 -4.4124 10 1 2.4871 -0.1401 -5.1121 11 1 3.6307 -1.7565 -3.7121 12 7 2.0183 -0.6907 1.1962 13 6 1.6644 -2.0932 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.0866 1.1285 1.8911 16 7 3.2429 -0.6713 3.1835 17 6 3.9671 0.0334 4.1517 18 6 4.8329 1.0539 3.7631 19 6 5.5459 1.7506 4.6960 20 6 5.4096 1.4408 6.0525 21 7 5.9611 1.9415 7.1869 22 6 5.4880 1.2816 8.2123 23 6 5.8533 1.5319 9.6233 24 6 6.7729 2.5341 9.9325 25 6 7.1050 2.7559 11.2579 26 6 6.5064 1.9689 12.2315 27 6 5.6059 0.9888 11.8533 28 7 5.3029 0.8012 10.5860 29 8 4.6147 0.3443 7.7954 30 6 4.5379 0.4121 6.4482 31 6 3.8199 -0.2876 5.4916 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 0.7086 1.1614 -3.4843 36 1 0.7375 -2.1444 1.9992 37 1 1.5294 -2.5969 0.4708 38 1 2.4628 -2.5820 1.9862 39 1 3.0644 -1.6171 3.3042 40 1 4.9408 1.2954 2.7160 41 1 6.2144 2.5403 4.3864 42 1 7.2194 3.1286 9.1492 43 1 7.8135 3.5249 11.5283 44 1 6.7448 2.1170 13.2744 45 1 5.1417 0.3721 12.6088 46 1 3.1485 -1.0795 5.7891 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096495686.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:12 Heat of formation + Delta-G solvation = 71.928158 kcal Electronic energy + Delta-G solvation = -30966.930521 eV Core-core repulsion = 26631.259024 eV Total energy + Delta-G solvation = -4335.671497 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.148 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.27301 -40.53742 -40.23573 -37.95608 -35.61282 -35.06976 -34.14634 -33.12956 -32.80914 -32.01788 -30.69719 -29.55863 -28.17461 -26.28401 -25.28278 -25.07326 -24.18808 -23.27270 -22.49932 -21.79219 -21.19514 -19.45953 -18.60606 -17.84415 -17.71846 -17.11126 -16.86157 -16.48505 -16.29028 -16.24694 -15.68067 -15.24972 -14.85124 -14.49339 -14.43026 -14.32581 -14.06558 -13.91634 -13.66451 -13.25749 -13.07113 -12.86765 -12.60185 -12.41872 -12.37331 -11.83183 -11.73407 -11.61563 -11.56437 -11.11314 -10.88259 -10.74978 -10.66556 -10.50202 -10.34155 -10.21330 -10.18641 -10.08322 -9.54315 -9.43522 -9.19992 -8.79236 -8.48027 -7.95629 -7.61134 -6.11952 -4.20361 -0.07083 0.73302 0.95481 1.27750 2.13381 2.30084 2.95399 3.22968 3.23645 3.31469 3.34193 3.34870 3.50990 3.83866 4.18344 4.27598 4.32775 4.39320 4.45379 4.49476 4.52772 4.69660 4.97377 5.01014 5.10165 5.19536 5.25458 5.30516 5.44720 5.51363 5.60750 5.76451 5.86845 5.88310 6.00660 6.06801 6.08572 6.19311 6.28320 6.49003 6.63482 6.75421 6.87690 6.95636 7.07035 7.28374 7.37244 7.49679 7.61636 7.72575 7.99524 8.14338 8.49906 8.79218 9.05265 9.46407 10.93300 Molecular weight = 366.15amu Principal moments of inertia in cm(-1) A = 0.030026 B = 0.001611 C = 0.001577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.293376 B =17372.572583 C =17751.780627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.272 3.728 3 H 0.067 0.933 4 C -0.529 4.529 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.599 5.599 13 C 0.082 3.918 14 C 0.697 3.303 15 O -0.574 6.574 16 N -0.691 5.691 17 C 0.226 3.774 18 C -0.116 4.116 19 C -0.036 4.036 20 C -0.005 4.005 21 N -0.444 5.444 22 C 0.270 3.730 23 C 0.196 3.804 24 C -0.117 4.117 25 C -0.075 4.075 26 C -0.158 4.158 27 C 0.105 3.895 28 N -0.461 5.461 29 O -0.192 6.192 30 C 0.042 3.958 31 C -0.146 4.146 32 H 0.095 0.905 33 H 0.030 0.970 34 H 0.012 0.988 35 H 0.264 0.736 36 H 0.046 0.954 37 H 0.087 0.913 38 H 0.047 0.953 39 H 0.407 0.593 40 H 0.162 0.838 41 H 0.141 0.859 42 H 0.153 0.847 43 H 0.146 0.854 44 H 0.143 0.857 45 H 0.165 0.835 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.832 -1.268 26.773 28.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.172 3.828 3 H 0.084 0.916 4 C -0.567 4.567 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.333 5.333 13 C -0.062 4.062 14 C 0.399 3.601 15 O -0.452 6.452 16 N -0.340 5.340 17 C 0.128 3.872 18 C -0.137 4.137 19 C -0.056 4.056 20 C -0.119 4.119 21 N -0.175 5.175 22 C 0.061 3.939 23 C 0.059 3.941 24 C -0.138 4.138 25 C -0.101 4.101 26 C -0.178 4.178 27 C -0.054 4.054 28 N -0.171 5.171 29 O -0.082 6.082 30 C -0.009 4.009 31 C -0.169 4.169 32 H 0.113 0.887 33 H 0.049 0.951 34 H 0.031 0.969 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.065 0.935 39 H 0.244 0.756 40 H 0.180 0.820 41 H 0.159 0.841 42 H 0.171 0.829 43 H 0.164 0.836 44 H 0.160 0.840 45 H 0.183 0.817 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 9.653 -0.504 26.108 27.840 hybrid contribution 0.137 -1.059 -0.497 1.178 sum 9.790 -1.564 25.611 27.463 Atomic orbital electron populations 1.22106 0.98060 0.99467 1.00930 1.18952 0.90782 0.94377 0.78726 0.91565 1.21309 1.32050 1.13154 0.90224 0.92197 1.24884 0.94904 0.94955 0.98962 1.69874 1.36166 1.22467 1.23878 0.86477 0.79156 0.79282 0.82354 1.20619 1.21070 1.19950 1.47650 1.50453 1.11611 1.23620 1.21590 0.98442 0.83333 1.02866 1.15958 0.79734 0.84968 0.79423 1.90879 1.62474 1.15390 1.76423 1.42997 1.57216 1.12955 1.20863 1.17173 0.90506 0.93133 0.86404 1.21201 0.94406 0.95957 1.02137 1.19997 0.98691 0.99167 0.87728 1.19741 1.00249 0.97965 0.93934 1.70562 1.24629 1.25540 0.96781 1.23068 0.90034 0.87398 0.93394 1.17829 0.95430 0.94404 0.86410 1.22051 0.96580 0.97005 0.98180 1.21622 0.98087 0.98445 0.91925 1.22393 0.97627 0.96512 1.01288 1.22791 0.94778 0.95915 0.91919 1.67565 1.23361 1.25044 1.01135 1.84605 1.53509 1.49950 1.20116 1.19870 1.00561 0.99421 0.81067 1.19257 1.04205 1.05073 0.88335 0.88678 0.95130 0.96928 0.92595 0.93591 0.89419 0.93459 0.75567 0.82048 0.84149 0.82908 0.83637 0.83960 0.81742 0.84382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 8.97 37.16 0.33 -3.09 16 2 C 0.27 6.69 2.64 -69.08 -0.18 6.51 16 3 H 0.07 1.90 6.90 -51.93 -0.36 1.54 16 4 C -0.53 -13.76 7.99 -34.44 -0.28 -14.03 16 5 H 0.06 1.53 7.33 -52.49 -0.38 1.14 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.46 11.32 55.43 0.63 -23.83 16 8 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 N -0.60 -12.15 2.75 -181.01 -0.50 -12.65 16 13 C 0.08 1.26 9.24 59.85 0.55 1.81 16 14 C 0.70 13.90 8.12 -86.92 -0.71 13.19 16 15 O -0.57 -13.48 13.08 5.28 0.07 -13.41 16 16 N -0.69 -10.49 5.21 -14.18 -0.07 -10.57 16 17 C 0.23 3.40 6.30 -83.61 -0.53 2.87 16 18 C -0.12 -1.81 8.61 -39.78 -0.34 -2.15 16 19 C -0.04 -0.52 10.05 -39.61 -0.40 -0.92 16 20 C 0.00 -0.07 7.23 -84.70 -0.61 -0.68 16 21 N -0.44 -6.48 10.86 -9.26 -0.10 -6.58 16 22 C 0.27 3.79 7.94 -14.05 -0.11 3.68 16 23 C 0.20 2.23 6.75 -83.03 -0.56 1.67 16 24 C -0.12 -0.98 9.71 -39.05 -0.38 -1.36 16 25 C -0.07 -0.41 10.17 -39.32 -0.40 -0.81 16 26 C -0.16 -0.77 10.11 -39.34 -0.40 -1.16 16 27 C 0.11 0.73 11.17 -17.58 -0.20 0.53 16 28 N -0.46 -5.06 10.29 -9.84 -0.10 -5.16 16 29 O -0.19 -2.91 10.78 2.31 0.02 -2.88 16 30 C 0.04 0.64 7.42 -38.60 -0.29 0.35 16 31 C -0.15 -1.99 9.98 -39.34 -0.39 -2.38 16 32 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 33 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 34 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 1.45 7.02 -51.93 -0.36 1.08 16 38 H 0.05 0.56 6.30 -51.93 -0.33 0.23 16 39 H 0.41 4.82 6.52 -40.82 -0.27 4.56 16 40 H 0.16 2.80 6.20 -52.49 -0.33 2.48 16 41 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 42 H 0.15 1.18 7.79 -52.49 -0.41 0.77 16 43 H 0.15 0.35 8.06 -52.49 -0.42 -0.07 16 44 H 0.14 0.24 8.06 -52.49 -0.42 -0.18 16 45 H 0.17 0.65 8.06 -52.48 -0.42 0.22 16 46 H 0.14 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 389.50 15.07 5.87 5.87 Total: -1.00 -33.24 389.50 -9.42 -42.66 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.24 Total: 5.36 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: -4.97 Total: 5.69 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: -0.15 Total: -58.78 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: 0.09 Total: -16.30 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.24 -9.42 -42.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096495686.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.585 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds