Wall clock time and date at job start Tue Mar 31 2020 05:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47250 * 2 1 4 4 C 1.50704 * 109.46881 * 240.00179 * 2 1 3 5 5 H 1.07998 * 119.99638 * 240.00188 * 4 2 1 6 6 C 1.37881 * 119.99968 * 59.99965 * 4 2 1 7 7 N 1.31514 * 119.99835 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99751 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46952 * 90.00308 * 8 6 4 10 10 H 1.48503 * 109.46917 * 209.99762 * 8 6 4 11 11 H 1.48497 * 109.47328 * 329.99889 * 8 6 4 12 12 N 1.46503 * 109.47140 * 120.00169 * 2 1 3 13 13 C 1.46499 * 119.99854 * 59.99822 * 12 2 1 14 14 C 1.34772 * 120.00096 * 239.99768 * 12 2 1 15 15 O 1.21592 * 119.99767 * 0.02562 * 14 12 2 16 16 N 1.34778 * 119.99924 * 180.02562 * 14 12 2 17 17 C 1.39945 * 119.99662 * 184.55368 * 16 14 12 18 18 C 1.39356 * 119.82594 * 324.84472 * 17 16 14 19 19 C 1.36532 * 120.50706 * 179.97438 * 18 17 16 20 20 C 1.39805 * 119.93023 * 0.02562 * 19 18 17 21 21 N 1.35713 * 133.60545 * 180.35552 * 20 19 18 22 22 C 1.30790 * 108.79711 * 180.09387 * 21 20 19 23 23 C 1.47886 * 124.97458 * 179.83481 * 22 21 20 24 24 C 1.39488 * 119.73811 * 359.69989 * 23 22 21 25 25 C 1.38425 * 119.05146 * 180.02562 * 24 23 22 26 26 C 1.38763 * 118.51651 * 359.97438 * 25 24 23 27 27 C 1.38371 * 119.38786 * 0.25869 * 26 25 24 28 28 N 1.31652 * 120.91723 * 359.46919 * 27 26 25 29 29 O 1.34715 * 110.05524 * 359.57070 * 22 21 20 30 30 C 1.35108 * 108.08984 * 0.26466 * 29 22 21 31 31 C 1.38569 * 133.82890 * 180.02562 * 30 29 22 32 32 H 1.09003 * 109.47236 * 59.99560 * 1 2 3 33 33 H 1.08994 * 109.47250 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.46732 * 299.99914 * 1 2 3 35 35 H 0.96998 * 120.00026 * 179.97438 * 7 6 4 36 36 H 1.09000 * 109.47224 * 270.00257 * 13 12 2 37 37 H 1.08999 * 109.47201 * 29.99888 * 13 12 2 38 38 H 1.09000 * 109.47399 * 149.99507 * 13 12 2 39 39 H 0.96999 * 120.00203 * 4.54661 * 16 14 12 40 40 H 1.07999 * 119.74488 * 359.97438 * 18 17 16 41 41 H 1.08001 * 120.03243 * 180.02562 * 19 18 17 42 42 H 1.08000 * 120.47722 * 0.04018 * 24 23 22 43 43 H 1.07999 * 120.74147 * 180.02562 * 25 24 23 44 44 H 1.07993 * 120.30276 * 179.97438 * 26 25 24 45 45 H 1.08005 * 119.53976 * 179.74217 * 27 26 25 46 46 H 1.08003 * 120.14732 * 359.95746 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9426 0.8297 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.3446 -2.1614 -4.4124 10 1 2.4871 -0.1401 -5.1121 11 1 3.6307 -1.7565 -3.7121 12 7 2.0183 -0.6907 1.1962 13 6 1.6644 -2.0932 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.0866 1.1285 1.8911 16 7 3.2429 -0.6713 3.1835 17 6 3.9671 0.0334 4.1517 18 6 4.8329 1.0539 3.7631 19 6 5.5459 1.7506 4.6960 20 6 5.4096 1.4408 6.0525 21 7 5.9611 1.9415 7.1869 22 6 5.4880 1.2816 8.2123 23 6 5.8533 1.5319 9.6233 24 6 6.7729 2.5341 9.9325 25 6 7.1050 2.7559 11.2579 26 6 6.5064 1.9689 12.2315 27 6 5.6059 0.9888 11.8533 28 7 5.3029 0.8012 10.5860 29 8 4.6147 0.3443 7.7954 30 6 4.5379 0.4121 6.4482 31 6 3.8199 -0.2876 5.4916 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 0.7086 1.1614 -3.4843 36 1 0.7375 -2.1444 1.9992 37 1 1.5294 -2.5969 0.4708 38 1 2.4628 -2.5820 1.9862 39 1 3.0644 -1.6171 3.3042 40 1 4.9408 1.2954 2.7160 41 1 6.2144 2.5403 4.3864 42 1 7.2194 3.1286 9.1492 43 1 7.8135 3.5249 11.5283 44 1 6.7448 2.1170 13.2744 45 1 5.1417 0.3721 12.6088 46 1 3.1485 -1.0795 5.7891 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096495686.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:10 Heat of formation + Delta-G solvation = 49.279297 kcal Electronic energy + Delta-G solvation = -30967.912650 eV Core-core repulsion = 26631.259024 eV Total energy + Delta-G solvation = -4336.653626 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.148 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -44.37236 -41.72609 -41.07323 -39.26215 -37.22507 -36.32494 -35.46906 -34.56681 -33.66438 -32.81978 -31.86948 -31.24313 -29.32636 -27.65233 -27.27830 -25.98322 -24.99342 -24.28076 -23.64490 -22.94243 -22.47911 -21.00492 -19.71441 -19.18039 -18.78979 -18.38695 -18.00053 -17.94594 -17.25688 -17.06726 -16.85741 -16.62266 -16.28227 -16.09547 -15.29647 -15.18238 -15.09977 -14.97935 -14.87205 -14.51750 -14.24194 -14.10075 -14.07404 -13.64395 -13.52585 -13.10304 -12.98795 -12.89566 -12.86953 -12.71257 -12.69759 -12.60471 -12.18795 -12.11107 -11.76748 -11.41152 -11.22519 -11.04323 -10.96798 -10.67568 -10.50549 -10.29878 -9.94692 -9.43684 -8.90916 -8.12637 -6.28812 -0.92573 0.03947 0.09847 0.24884 1.06125 1.30568 1.43467 1.45274 1.54486 1.70924 2.06606 2.25550 2.42875 2.55577 2.77803 2.98908 3.15898 3.34406 3.53949 3.71063 3.86197 3.89573 3.99217 4.02122 4.11958 4.19565 4.32577 4.41233 4.60060 4.68330 4.73337 4.74451 4.77789 4.87883 4.90704 4.95385 5.00341 5.07452 5.07699 5.11280 5.18082 5.27732 5.44296 5.52367 5.60624 5.65417 5.67000 5.94465 6.15258 6.20556 6.32547 6.77442 6.78390 7.00082 7.36916 7.55169 8.91559 Molecular weight = 366.15amu Principal moments of inertia in cm(-1) A = 0.030026 B = 0.001611 C = 0.001577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.293376 B =17372.572583 C =17751.780627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.277 3.723 3 H 0.014 0.986 4 C -0.537 4.537 5 H 0.063 0.937 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.965 3.035 9 H -0.268 1.268 10 H -0.288 1.288 11 H -0.271 1.271 12 N -0.607 5.607 13 C 0.076 3.924 14 C 0.694 3.306 15 O -0.619 6.619 16 N -0.669 5.669 17 C 0.208 3.792 18 C -0.125 4.125 19 C -0.037 4.037 20 C -0.014 4.014 21 N -0.463 5.463 22 C 0.279 3.721 23 C 0.153 3.847 24 C -0.118 4.118 25 C -0.070 4.070 26 C -0.134 4.134 27 C 0.094 3.906 28 N -0.496 5.496 29 O -0.202 6.202 30 C 0.023 3.977 31 C -0.124 4.124 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.018 0.982 35 H 0.264 0.736 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.424 0.576 40 H 0.140 0.860 41 H 0.156 0.844 42 H 0.152 0.848 43 H 0.182 0.818 44 H 0.186 0.814 45 H 0.193 0.807 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.783 -2.730 30.044 32.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.175 3.825 3 H 0.032 0.968 4 C -0.576 4.576 5 H 0.081 0.919 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.790 3.210 9 H -0.194 1.194 10 H -0.214 1.214 11 H -0.196 1.196 12 N -0.340 5.340 13 C -0.066 4.066 14 C 0.396 3.604 15 O -0.499 6.499 16 N -0.320 5.320 17 C 0.110 3.890 18 C -0.147 4.147 19 C -0.056 4.056 20 C -0.127 4.127 21 N -0.193 5.193 22 C 0.070 3.930 23 C 0.018 3.982 24 C -0.139 4.139 25 C -0.096 4.096 26 C -0.154 4.154 27 C -0.065 4.065 28 N -0.206 5.206 29 O -0.093 6.093 30 C -0.028 4.028 31 C -0.146 4.146 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.037 0.963 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.266 0.734 40 H 0.158 0.842 41 H 0.173 0.827 42 H 0.170 0.830 43 H 0.200 0.800 44 H 0.203 0.797 45 H 0.209 0.791 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 10.612 -2.024 29.410 31.331 hybrid contribution -0.061 -0.536 -1.174 1.292 sum 10.551 -2.560 28.236 30.252 Atomic orbital electron populations 1.21889 0.97102 1.00198 0.99924 1.18513 0.91419 0.92176 0.80380 0.96767 1.21578 1.31902 1.13151 0.90962 0.91853 1.25702 0.95108 0.95613 1.01935 1.70020 1.37277 1.23817 1.24415 0.85458 0.78798 0.78197 0.78539 1.19352 1.21379 1.19600 1.47477 1.50582 1.13417 1.22574 1.21864 1.01017 0.80450 1.03296 1.16072 0.79538 0.84525 0.80251 1.90854 1.63906 1.17582 1.77596 1.42546 1.56525 1.13552 1.19411 1.17180 0.91163 0.93745 0.86883 1.21059 0.95449 0.96889 1.01269 1.20064 0.98774 0.99379 0.87394 1.19963 1.00323 0.98124 0.94326 1.70571 1.25632 1.26361 0.96769 1.23904 0.88449 0.85990 0.94706 1.17909 0.98078 0.96866 0.85336 1.22202 0.95784 0.96069 0.99878 1.22097 0.98082 0.98924 0.90481 1.22893 0.95062 0.94172 1.03229 1.23409 0.95249 0.96865 0.90975 1.67469 1.24548 1.26003 1.02629 1.84603 1.54069 1.50566 1.20054 1.20092 1.01285 1.00032 0.81408 1.19381 1.03318 1.04717 0.87200 0.91300 0.93333 0.96258 0.92668 0.91355 0.90440 0.89638 0.73437 0.84244 0.82664 0.83024 0.80021 0.79711 0.79061 0.81484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.27 8.97 71.98 0.65 -5.62 16 2 C 0.28 14.07 2.64 44.25 0.12 14.19 16 3 H 0.01 0.87 6.90 -2.39 -0.02 0.86 16 4 C -0.54 -28.37 7.99 25.60 0.20 -28.17 16 5 H 0.06 3.22 7.33 -2.91 -0.02 3.20 16 6 C 0.02 0.87 5.30 84.66 0.45 1.32 16 7 N -0.92 -52.06 11.32 21.45 0.24 -51.81 16 8 Si 0.96 42.35 29.54 68.60 2.03 44.38 16 9 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 10 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 11 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 12 N -0.61 -24.67 2.75 -844.84 -2.33 -27.00 16 13 C 0.08 2.19 9.24 127.77 1.18 3.37 16 14 C 0.69 28.19 8.12 179.06 1.45 29.64 16 15 O -0.62 -30.64 13.08 -4.01 -0.05 -30.69 16 16 N -0.67 -19.92 5.21 -317.02 -1.65 -21.57 16 17 C 0.21 6.26 6.30 38.19 0.24 6.51 16 18 C -0.13 -4.10 8.61 22.14 0.19 -3.91 16 19 C -0.04 -1.09 10.05 22.25 0.22 -0.87 16 20 C -0.01 -0.43 7.23 39.48 0.29 -0.15 16 21 N -0.46 -13.87 10.86 -297.34 -3.23 -17.10 16 22 C 0.28 7.99 7.94 87.41 0.69 8.68 16 23 C 0.15 3.46 6.75 41.85 0.28 3.74 16 24 C -0.12 -1.82 9.71 22.62 0.22 -1.60 16 25 C -0.07 -0.52 10.17 22.44 0.23 -0.29 16 26 C -0.13 -0.73 10.11 22.43 0.23 -0.50 16 27 C 0.09 1.06 11.17 84.75 0.95 2.00 16 28 N -0.50 -10.43 10.29 -185.04 -1.90 -12.34 16 29 O -0.20 -6.21 10.78 -14.66 -0.16 -6.37 16 30 C 0.02 0.70 7.42 22.91 0.17 0.87 16 31 C -0.12 -3.29 9.98 22.43 0.22 -3.07 16 32 H 0.07 3.64 6.07 -2.39 -0.01 3.62 16 33 H 0.05 2.06 7.67 -2.39 -0.02 2.04 16 34 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.26 14.27 8.31 -92.71 -0.77 13.49 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.08 2.43 7.02 -2.39 -0.02 2.41 16 38 H 0.09 1.78 6.30 -2.39 -0.02 1.76 16 39 H 0.42 9.15 6.52 -92.71 -0.60 8.55 16 40 H 0.14 5.23 6.20 -2.91 -0.02 5.21 16 41 H 0.16 3.96 8.06 -2.91 -0.02 3.94 16 42 H 0.15 2.27 7.79 -2.91 -0.02 2.24 16 43 H 0.18 0.00 8.06 -2.91 -0.02 -0.02 16 44 H 0.19 -0.53 8.06 -2.91 -0.02 -0.55 16 45 H 0.19 0.88 8.06 -2.91 -0.02 0.86 16 46 H 0.17 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -77.74 389.50 1.38 -76.36 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.45 Total: 20.01 kcal Atomic # 6 Polarization: 18.15 SS G_CDS: 7.98 Total: 26.13 kcal Atomic # 7 Polarization: -120.95 SS G_CDS: -8.87 Total: -129.82 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -0.21 Total: -37.06 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -77.74 1.38 -76.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096495686.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.642 kcal (2) G-P(sol) polarization free energy of solvation -77.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds