Wall clock time and date at job start Tue Mar 31 2020 06:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35950 * 117.00380 * 2 1 4 4 C 1.38083 * 120.00079 * 359.97438 * 3 2 1 5 5 C 1.39973 * 119.84267 * 179.97438 * 4 3 2 6 6 C 1.46962 * 120.07939 * 180.02562 * 5 4 3 7 7 C 1.35021 * 120.00342 * 136.66597 * 6 5 4 8 8 C 1.46254 * 120.00037 * 348.68588 * 7 6 5 9 9 O 1.21728 * 119.99818 * 353.21958 * 8 7 6 10 10 N 1.34775 * 120.00447 * 173.21272 * 8 7 6 11 11 C 1.46500 * 120.00220 * 179.72449 * 10 8 7 12 12 C 1.50706 * 109.47225 * 180.27664 * 11 10 8 13 13 C 1.38231 * 119.99871 * 269.72922 * 12 11 10 14 14 C 1.38238 * 119.99616 * 179.74187 * 13 12 11 15 15 C 1.38233 * 120.00164 * 0.55044 * 14 13 12 16 16 C 1.50693 * 120.00150 * 179.72256 * 15 14 13 17 17 C 1.38238 * 119.99671 * 359.70279 * 15 14 13 18 18 C 1.38232 * 119.99685 * 89.99953 * 12 11 10 19 19 C 1.40030 * 119.84138 * 0.27437 * 5 4 3 20 20 C 1.37648 * 119.99878 * 359.44634 * 19 5 4 21 21 C 1.39057 * 120.16123 * 0.55636 * 20 19 5 22 22 O 1.35615 * 119.91977 * 179.73954 * 21 20 19 23 23 C 1.34763 * 116.99927 * 354.29731 * 22 21 20 24 24 H 1.07994 * 120.00190 * 5.06783 * 23 22 21 25 25 C 1.38708 * 119.99664 * 185.05949 * 23 22 21 26 26 N 1.31517 * 120.00149 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99913 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47010 * 90.00452 * 27 25 23 29 29 H 1.48497 * 109.46988 * 210.00410 * 27 25 23 30 30 H 1.48500 * 109.46923 * 330.00303 * 27 25 23 31 31 H 1.09005 * 109.46793 * 299.99736 * 1 2 3 32 32 H 1.08994 * 109.47106 * 59.99551 * 1 2 3 33 33 H 1.09000 * 109.46931 * 180.02562 * 1 2 3 34 34 H 1.08001 * 120.07572 * 359.96364 * 4 3 2 35 35 H 1.08001 * 119.99856 * 316.65823 * 6 5 4 36 36 H 1.07998 * 120.00236 * 168.68632 * 7 6 5 37 37 H 0.97006 * 119.99988 * 0.02562 * 10 8 7 38 38 H 1.08991 * 109.47373 * 300.27783 * 11 10 8 39 39 H 1.08998 * 109.46998 * 60.28134 * 11 10 8 40 40 H 1.08001 * 120.00456 * 359.97438 * 13 12 11 41 41 H 1.08007 * 119.99960 * 180.27302 * 14 13 12 42 42 H 1.09001 * 109.47490 * 269.98026 * 16 15 14 43 43 H 1.09003 * 109.47293 * 29.97805 * 16 15 14 44 44 H 1.09002 * 109.47341 * 149.97787 * 16 15 14 45 45 H 1.08001 * 119.99536 * 179.97438 * 17 15 14 46 46 H 1.07999 * 120.00447 * 0.02562 * 18 12 11 47 47 H 1.08004 * 120.00070 * 179.70259 * 19 5 4 48 48 H 1.08006 * 119.91918 * 180.27382 * 20 19 5 49 49 H 0.97000 * 120.00324 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2943 2.3694 -0.0005 5 6 1.9333 3.6148 0.0000 6 6 1.1380 4.8507 0.0000 7 6 1.4876 5.8785 0.8028 8 6 2.4952 5.6826 1.8447 9 8 2.9285 4.5677 2.0704 10 7 2.9441 6.7365 2.5548 11 6 3.9489 6.5395 3.6025 12 6 4.2722 7.8643 4.2441 13 6 5.2951 8.6452 3.7395 14 6 5.5882 9.8628 4.3248 15 6 4.8658 10.2942 5.4215 16 6 5.1893 11.6187 6.0633 17 6 3.8463 9.5108 5.9292 18 6 3.5495 8.2958 5.3405 19 6 3.3320 3.6802 -0.0047 20 6 4.0752 2.5217 0.0016 21 6 3.4405 1.2844 0.0011 22 8 4.1776 0.1460 0.0020 23 6 5.5132 0.2819 -0.1159 24 1 5.9573 1.2662 -0.1231 25 6 6.3174 -0.8427 -0.2277 26 7 5.7765 -2.0415 -0.2192 27 14 8.1688 -0.6546 -0.3904 28 1 8.7866 -0.6524 0.9600 29 1 8.7136 -1.7865 -1.1822 30 1 8.4777 0.6247 -1.0782 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 0.2157 2.3144 -0.0015 35 1 0.2740 4.9368 -0.6423 36 1 1.0232 6.8452 0.6756 37 1 2.5986 7.6250 2.3751 38 1 3.5584 5.8563 4.3566 39 1 4.8533 6.1180 3.1638 40 1 5.8629 8.3058 2.8858 41 1 6.3845 10.4750 3.9278 42 1 5.9369 11.4718 6.8429 43 1 5.5802 12.3020 5.3094 44 1 4.2850 12.0405 6.5020 45 1 3.2821 9.8477 6.7864 46 1 2.7534 7.6835 5.7377 47 1 3.8277 4.6398 -0.0092 48 1 5.1540 2.5737 0.0024 49 1 6.3389 -2.8280 -0.2971 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096577953.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:35 Heat of formation + Delta-G solvation = -19.432297 kcal Electronic energy + Delta-G solvation = -31493.649833 eV Core-core repulsion = 27159.838331 eV Total energy + Delta-G solvation = -4333.811503 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.162 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.08578 -39.60269 -38.98820 -37.41780 -36.28874 -35.02572 -32.94746 -32.72029 -32.05106 -31.24336 -29.43064 -29.02027 -28.12953 -26.39419 -25.40382 -24.89854 -23.02957 -22.88539 -21.45102 -21.14597 -20.91808 -19.31135 -17.95012 -17.78360 -16.65444 -16.43138 -16.08466 -15.90395 -15.50298 -15.24264 -15.02827 -15.01358 -14.71771 -14.39774 -14.11673 -14.00657 -13.76420 -13.70515 -13.41220 -13.33363 -13.25981 -12.88648 -12.85453 -12.58850 -12.30207 -12.24878 -12.19835 -11.63476 -11.41474 -11.35179 -11.31967 -11.26591 -11.00865 -10.87627 -10.60588 -10.45335 -10.29874 -9.52808 -9.34305 -9.23935 -9.11163 -8.92988 -8.85860 -8.61962 -7.67759 -6.60327 -6.39833 -3.92260 0.91991 1.09526 1.22734 2.37457 2.70811 3.17070 3.17995 3.21416 3.22453 3.65629 3.71117 4.00590 4.15283 4.40453 4.48613 4.61180 4.67272 4.71508 4.88571 5.10275 5.15117 5.15521 5.17868 5.20129 5.25265 5.29280 5.40928 5.47736 5.56023 5.58742 5.65368 5.67958 5.77835 5.78054 5.82113 5.88688 5.94253 6.07337 6.25466 6.26306 6.33340 6.34854 6.48866 6.51618 6.60821 6.68335 6.75837 7.07033 7.20851 7.32719 7.49493 7.70047 7.74935 8.02106 8.31668 8.56742 9.04373 9.77431 10.77207 Molecular weight = 367.16amu Principal moments of inertia in cm(-1) A = 0.009032 B = 0.002196 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3099.338050 B =12749.281108 C =15158.269463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.305 6.305 3 C 0.038 3.962 4 C -0.135 4.135 5 C -0.159 4.159 6 C 0.025 3.975 7 C -0.262 4.262 8 C 0.537 3.463 9 O -0.510 6.510 10 N -0.732 5.732 11 C 0.162 3.838 12 C -0.108 4.108 13 C -0.096 4.096 14 C -0.123 4.123 15 C -0.084 4.084 16 C -0.116 4.116 17 C -0.124 4.124 18 C -0.097 4.097 19 C -0.006 4.006 20 C -0.223 4.223 21 C 0.153 3.847 22 O -0.158 6.158 23 C -0.388 4.388 24 H 0.093 0.907 25 C 0.039 3.961 26 N -0.854 5.854 27 Si 0.941 3.059 28 H -0.273 1.273 29 H -0.277 1.277 30 H -0.267 1.267 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.396 0.604 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.099 0.901 48 H 0.131 0.869 49 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.504 24.868 7.451 26.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.220 6.220 3 C -0.006 4.006 4 C -0.154 4.154 5 C -0.160 4.160 6 C 0.005 3.995 7 C -0.283 4.283 8 C 0.327 3.673 9 O -0.385 6.385 10 N -0.386 5.386 11 C 0.039 3.961 12 C -0.109 4.109 13 C -0.115 4.115 14 C -0.141 4.141 15 C -0.084 4.084 16 C -0.172 4.172 17 C -0.142 4.142 18 C -0.116 4.116 19 C -0.025 4.025 20 C -0.242 4.242 21 C 0.098 3.902 22 O -0.060 6.060 23 C -0.464 4.464 24 H 0.111 0.889 25 C -0.166 4.166 26 N -0.488 5.488 27 Si 0.766 3.234 28 H -0.198 1.198 29 H -0.202 1.202 30 H -0.191 1.191 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.107 0.893 34 H 0.134 0.866 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.229 0.771 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.117 0.883 48 H 0.148 0.852 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.048 23.322 7.624 25.271 hybrid contribution 0.475 0.882 0.013 1.002 sum -5.573 24.204 7.636 25.985 Atomic orbital electron populations 1.22845 0.80711 1.02693 1.00070 1.86219 1.19119 1.26506 1.90108 1.17929 0.89341 0.84337 1.09041 1.20672 0.97955 0.90967 1.05828 1.18016 0.92863 0.91216 1.13941 1.22287 0.94016 0.91420 0.91776 1.22595 1.04864 1.00165 1.00699 1.18518 0.81994 0.84342 0.82449 1.91019 1.57212 1.22921 1.67398 1.46041 1.43780 1.10664 1.38069 1.20107 0.92774 0.93009 0.90227 1.19944 0.97252 0.96614 0.97049 1.21140 0.96812 0.94058 0.99474 1.21052 1.00054 0.96630 0.96392 1.19984 0.95833 0.96688 0.95875 1.20811 1.02142 0.93625 1.00662 1.21037 0.98049 0.94804 1.00299 1.21116 0.99013 0.96076 0.95387 1.20489 0.91961 0.96477 0.93539 1.20716 1.00297 0.90868 1.12362 1.18816 0.88232 0.87546 0.95649 1.83988 1.19450 1.25721 1.76874 1.21422 0.78686 0.94795 1.51458 0.88928 1.25328 1.00469 0.94234 0.96589 1.70054 1.36157 0.97621 1.44948 0.85709 0.80601 0.78420 0.78689 1.19843 1.20244 1.19122 0.93790 0.93742 0.89264 0.86563 0.86079 0.86130 0.77082 0.90817 0.90635 0.85688 0.85963 0.91087 0.91498 0.91527 0.86012 0.85807 0.88271 0.85154 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 9.81 101.05 0.99 1.52 16 2 O -0.31 -7.08 10.28 -34.19 -0.35 -7.43 16 3 C 0.04 0.90 6.70 -39.12 -0.26 0.64 16 4 C -0.13 -2.65 8.77 -38.99 -0.34 -2.99 16 5 C -0.16 -2.98 4.54 -105.04 -0.48 -3.46 16 6 C 0.02 0.35 9.80 -37.19 -0.36 -0.02 16 7 C -0.26 -3.31 9.90 -37.51 -0.37 -3.68 16 8 C 0.54 7.97 6.77 -13.04 -0.09 7.88 16 9 O -0.51 -10.01 12.18 5.16 0.06 -9.95 16 10 N -0.73 -8.28 5.54 -62.94 -0.35 -8.63 16 11 C 0.16 1.84 5.80 -5.19 -0.03 1.81 16 12 C -0.11 -1.02 5.25 -104.62 -0.55 -1.57 16 13 C -0.10 -0.86 9.70 -39.58 -0.38 -1.24 16 14 C -0.12 -0.98 9.70 -39.58 -0.38 -1.37 16 15 C -0.08 -0.64 5.88 -104.63 -0.62 -1.25 16 16 C -0.12 -0.61 10.01 36.00 0.36 -0.25 16 17 C -0.12 -0.97 9.70 -39.58 -0.38 -1.35 16 18 C -0.10 -0.85 9.70 -39.59 -0.38 -1.23 16 19 C -0.01 -0.12 6.59 -39.13 -0.26 -0.38 16 20 C -0.22 -5.28 9.14 -39.49 -0.36 -5.64 16 21 C 0.15 4.03 6.67 -38.76 -0.26 3.77 16 22 O -0.16 -4.82 9.52 -13.96 -0.13 -4.95 16 23 C -0.39 -11.29 9.48 30.91 0.29 -11.00 16 24 H 0.09 2.50 5.18 -52.49 -0.27 2.23 16 25 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 26 N -0.85 -25.83 13.67 55.48 0.76 -25.07 16 27 Si 0.94 21.08 29.55 -169.99 -5.02 16.06 16 28 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 29 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 30 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 31 H 0.04 0.64 7.66 -51.93 -0.40 0.24 16 32 H 0.04 0.62 7.66 -51.93 -0.40 0.23 16 33 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.12 1.89 6.28 -52.49 -0.33 1.56 16 35 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 37 H 0.40 3.45 8.44 -40.82 -0.34 3.10 16 38 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 39 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 40 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 42 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 44 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 45 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 46 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 47 H 0.10 1.87 7.02 -52.48 -0.37 1.50 16 48 H 0.13 3.07 5.62 -52.48 -0.29 2.77 16 49 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 414.62 15.07 6.25 6.25 Total: -1.00 -36.11 414.62 -9.35 -45.46 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -6.60 Total: 7.06 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -3.96 Total: -18.80 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.41 Total: -33.70 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.42 Total: -22.33 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -36.11 -9.35 -45.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096577953.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.031 kcal (2) G-P(sol) polarization free energy of solvation -36.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds