Wall clock time and date at job start Tue Mar 31 2020 05:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37984 * 120.07403 * 2 1 4 4 C 1.38334 * 120.14538 * 179.97438 * 3 2 1 5 5 C 1.38380 * 120.29417 * 0.03811 * 4 3 2 6 6 C 1.37942 * 120.14496 * 359.70161 * 5 4 3 7 7 C 1.39563 * 120.07505 * 179.97438 * 2 1 3 8 8 C 1.47840 * 120.14142 * 0.02562 * 7 2 1 9 9 O 1.21546 * 120.00152 * 2.61948 * 8 7 2 10 10 N 1.34781 * 119.99802 * 182.62446 * 8 7 2 11 11 N 1.40103 * 119.99978 * 180.02562 * 10 8 7 12 12 C 1.34779 * 119.99766 * 179.97438 * 11 10 8 13 13 O 1.21715 * 120.00084 * 0.02562 * 12 11 10 14 14 C 1.46253 * 119.99664 * 179.97438 * 12 11 10 15 15 C 1.35024 * 119.99586 * 186.82754 * 14 12 11 16 16 C 1.46958 * 120.00425 * 12.34772 * 15 14 12 17 17 C 1.40021 * 120.10170 * 224.84922 * 16 15 14 18 18 C 1.37603 * 119.89604 * 179.76257 * 17 16 15 19 19 C 1.39179 * 120.10066 * 0.51585 * 18 17 16 20 20 O 1.35563 * 119.89631 * 179.76391 * 19 18 17 21 21 C 1.34785 * 116.99876 * 174.49454 * 20 19 18 22 22 H 1.07993 * 120.00279 * 5.07066 * 21 20 19 23 23 C 1.38725 * 119.99605 * 185.07566 * 21 20 19 24 24 N 1.31498 * 120.00365 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99267 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47631 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.46991 * 120.00137 * 25 23 21 28 28 H 1.48498 * 109.46655 * 239.99764 * 25 23 21 29 29 C 1.39169 * 120.20227 * 359.73541 * 19 18 17 30 30 C 1.37603 * 120.10430 * 0.02562 * 29 19 18 31 31 H 1.08999 * 109.47125 * 262.63274 * 1 2 3 32 32 H 1.08994 * 109.46821 * 22.63727 * 1 2 3 33 33 H 1.09007 * 109.46691 * 142.63516 * 1 2 3 34 34 H 1.07995 * 119.92414 * 359.97438 * 3 2 1 35 35 H 1.08004 * 119.85448 * 180.02562 * 4 3 2 36 36 H 1.07999 * 119.93288 * 179.97438 * 5 4 3 37 37 H 1.07997 * 120.07614 * 180.29551 * 6 5 4 38 38 H 0.96997 * 119.99871 * 359.97438 * 10 8 7 39 39 H 0.96994 * 119.99890 * 359.97438 * 11 10 8 40 40 H 1.07998 * 120.00153 * 7.09951 * 14 12 11 41 41 H 1.08000 * 119.99731 * 192.35269 * 15 14 12 42 42 H 1.07997 * 120.05221 * 0.02562 * 17 16 15 43 43 H 1.07999 * 119.94603 * 180.22656 * 18 17 16 44 44 H 0.96996 * 120.00150 * 180.02562 * 24 23 21 45 45 H 1.08001 * 119.95324 * 179.97438 * 29 19 18 46 46 H 1.08001 * 120.04963 * 180.02562 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1941 0.0000 4 6 3.5818 1.1958 0.0005 5 6 4.2814 0.0018 0.0003 6 6 3.6023 -1.1989 0.0057 7 6 2.2064 -1.2077 0.0005 8 6 1.4721 -2.4909 0.0005 9 8 0.2576 -2.4960 -0.0480 10 7 2.1493 -3.6549 0.0545 11 7 1.4535 -4.8709 0.0540 12 6 2.1308 -6.0349 0.1074 13 8 3.3469 -6.0297 0.1566 14 6 1.4043 -7.3043 0.1074 15 6 2.0702 -8.4631 0.2995 16 6 3.4607 -8.4417 0.7745 17 6 4.4207 -9.2653 0.1740 18 6 5.7225 -9.2383 0.6189 19 6 6.0833 -8.4018 1.6712 20 8 7.3660 -8.3820 2.1094 21 6 7.6765 -7.4704 3.0525 22 1 6.9016 -6.8540 3.4835 23 6 8.9915 -7.3240 3.4693 24 7 9.9350 -8.0748 2.9447 25 14 9.4218 -6.0601 4.7758 26 1 8.1897 -5.3486 5.2011 27 1 10.0277 -6.7446 5.9461 28 1 10.3902 -5.0821 4.2184 29 6 5.1314 -7.5853 2.2745 30 6 3.8282 -7.6020 1.8331 31 1 -0.3633 -0.1318 1.0192 32 1 -0.3633 0.9485 -0.3955 33 1 -0.3633 -0.8168 -0.6237 34 1 1.6585 2.1293 -0.0004 35 1 4.1183 2.1332 0.0010 36 1 5.3613 0.0100 0.0003 37 1 4.1494 -2.1300 0.0103 38 1 3.1185 -3.6507 0.0930 39 1 0.4843 -4.8750 0.0151 40 1 0.3360 -7.3151 -0.0505 41 1 1.5808 -9.4058 0.1039 42 1 4.1408 -9.9177 -0.6399 43 1 6.4644 -9.8705 0.1539 44 1 10.8544 -7.9727 3.2364 45 1 5.4157 -6.9381 3.0911 46 1 3.0903 -6.9677 2.3017 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096646217.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:06 Heat of formation + Delta-G solvation = 22.337378 kcal Electronic energy + Delta-G solvation = -31174.121903 eV Core-core repulsion = 26804.007237 eV Total energy + Delta-G solvation = -4370.114666 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.141 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.86185 -39.79393 -38.89933 -38.34695 -36.64017 -35.40196 -33.21604 -32.96261 -32.47291 -32.13847 -30.48806 -30.14620 -28.09632 -27.22787 -25.41963 -24.37495 -23.37396 -22.03963 -21.77380 -21.51838 -21.03790 -19.42613 -18.12597 -17.96212 -17.76870 -17.18225 -16.50855 -15.96406 -15.69240 -15.63464 -15.12511 -14.82624 -14.70080 -14.47769 -14.32497 -14.01649 -13.76844 -13.69814 -13.57084 -13.47825 -13.41933 -12.94750 -12.70295 -12.40403 -12.35823 -12.32942 -12.07454 -11.73636 -11.47769 -11.42903 -11.27664 -11.04760 -10.84353 -10.63771 -10.45652 -10.02699 -9.75947 -9.47634 -9.39070 -9.26250 -9.06664 -8.76605 -8.40358 -8.00155 -6.96306 -6.50763 -4.06150 0.48463 1.00628 1.11504 1.74707 2.34110 2.48666 2.62190 3.10006 3.11207 3.16757 3.41135 3.52935 3.89144 3.93001 4.39580 4.43322 4.51156 4.62780 4.68948 4.95077 4.96673 5.05924 5.10368 5.14225 5.27494 5.32289 5.45475 5.49829 5.55369 5.58213 5.67548 5.78508 5.90016 5.98685 6.09606 6.14952 6.17009 6.23819 6.32797 6.48110 6.52847 6.62675 6.69998 6.75121 6.96547 7.07471 7.26240 7.39810 7.44544 7.49782 7.79541 7.85307 7.96009 8.40040 8.95091 9.65857 10.67001 Molecular weight = 366.14amu Principal moments of inertia in cm(-1) A = 0.007583 B = 0.002643 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3691.535037 B =10589.592930 C =13749.273601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.019 4.019 3 C -0.134 4.134 4 C -0.086 4.086 5 C -0.132 4.132 6 C -0.079 4.079 7 C -0.136 4.136 8 C 0.560 3.440 9 O -0.538 6.538 10 N -0.515 5.515 11 N -0.528 5.528 12 C 0.543 3.457 13 O -0.511 6.511 14 C -0.261 4.261 15 C 0.040 3.960 16 C -0.192 4.192 17 C -0.043 4.043 18 C -0.207 4.207 19 C 0.171 3.829 20 O -0.171 6.171 21 C -0.389 4.389 22 H 0.094 0.906 23 C 0.040 3.960 24 N -0.859 5.859 25 Si 0.941 3.059 26 H -0.266 1.266 27 H -0.275 1.275 28 H -0.275 1.275 29 C -0.241 4.241 30 C 0.008 3.992 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.432 0.568 39 H 0.428 0.572 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.112 0.888 43 H 0.116 0.884 44 H 0.271 0.729 45 H 0.125 0.875 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.525 13.574 -6.250 23.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.020 4.020 3 C -0.152 4.152 4 C -0.104 4.104 5 C -0.150 4.150 6 C -0.098 4.098 7 C -0.140 4.140 8 C 0.348 3.652 9 O -0.416 6.416 10 N -0.262 5.262 11 N -0.278 5.278 12 C 0.333 3.667 13 O -0.386 6.386 14 C -0.284 4.284 15 C 0.020 3.980 16 C -0.193 4.193 17 C -0.062 4.062 18 C -0.226 4.226 19 C 0.116 3.884 20 O -0.073 6.073 21 C -0.465 4.465 22 H 0.112 0.888 23 C -0.165 4.165 24 N -0.493 5.493 25 Si 0.766 3.234 26 H -0.190 1.190 27 H -0.201 1.201 28 H -0.201 1.201 29 C -0.261 4.261 30 C -0.011 4.011 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.121 0.879 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.275 0.725 39 H 0.269 0.731 40 H 0.146 0.854 41 H 0.146 0.854 42 H 0.130 0.870 43 H 0.134 0.866 44 H 0.081 0.919 45 H 0.142 0.858 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.006 13.379 -6.268 22.527 hybrid contribution 0.293 0.794 0.653 1.068 sum -16.713 14.173 -5.615 22.622 Atomic orbital electron populations 1.21192 0.89922 1.03457 1.03849 1.20029 0.96938 0.91229 0.93776 1.21081 0.94297 0.97461 1.02325 1.21413 0.94275 0.98448 0.96305 1.21148 1.00633 0.91984 1.01221 1.21414 0.92799 0.99164 0.96376 1.19454 0.93465 0.92008 1.09061 1.18331 0.87335 0.82493 0.77000 1.90698 1.13063 1.86655 1.51217 1.44770 1.09453 0.97021 1.74951 1.45067 1.08777 0.95955 1.78037 1.18754 0.88165 0.82728 0.77023 1.91026 1.12807 1.86262 1.48464 1.22297 0.99762 0.90995 1.15313 1.22374 0.93067 0.96489 0.86070 1.18299 0.92798 1.05184 1.03004 1.20630 0.92090 0.96116 0.97346 1.20020 0.96567 1.05471 1.00545 1.19534 0.85319 0.92405 0.91182 1.83903 1.21523 1.51270 1.50647 1.21444 0.94150 1.15280 1.15648 0.88847 1.25325 0.94380 0.98178 0.98630 1.70021 1.01229 1.37294 1.40737 0.85641 0.79058 0.79371 0.79358 1.19031 1.20055 1.20053 1.20959 0.93335 1.06075 1.05701 1.20572 0.94838 0.92300 0.93381 0.90748 0.92313 0.87949 0.85224 0.85379 0.84991 0.85268 0.72468 0.73079 0.85434 0.85436 0.87038 0.86558 0.91942 0.85780 0.88503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 8.85 36.01 0.32 -0.86 16 2 C -0.02 -0.18 5.91 -104.22 -0.62 -0.80 16 3 C -0.13 -1.08 9.66 -39.64 -0.38 -1.46 16 4 C -0.09 -0.65 10.04 -39.49 -0.40 -1.05 16 5 C -0.13 -1.12 10.03 -39.64 -0.40 -1.52 16 6 C -0.08 -0.77 9.54 -39.18 -0.37 -1.14 16 7 C -0.14 -1.48 5.87 -104.97 -0.62 -2.09 16 8 C 0.56 6.88 7.86 -12.33 -0.10 6.78 16 9 O -0.54 -7.32 13.07 5.33 0.07 -7.25 16 10 N -0.51 -6.38 6.21 30.53 0.19 -6.19 16 11 N -0.53 -6.49 6.26 30.16 0.19 -6.30 16 12 C 0.54 7.75 6.95 -13.04 -0.09 7.66 16 13 O -0.51 -9.36 12.25 5.18 0.06 -9.29 16 14 C -0.26 -3.08 9.89 -37.51 -0.37 -3.45 16 15 C 0.04 0.51 9.79 -37.19 -0.36 0.15 16 16 C -0.19 -3.35 4.44 -105.03 -0.47 -3.82 16 17 C -0.04 -0.79 9.78 -39.15 -0.38 -1.17 16 18 C -0.21 -4.45 9.97 -39.46 -0.39 -4.84 16 19 C 0.17 4.21 6.66 -38.89 -0.26 3.95 16 20 O -0.17 -4.91 9.74 0.75 0.01 -4.91 16 21 C -0.39 -10.90 9.48 30.91 0.29 -10.61 16 22 H 0.09 2.45 5.18 -52.49 -0.27 2.18 16 23 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 24 N -0.86 -25.03 13.67 55.48 0.76 -24.27 16 25 Si 0.94 20.44 29.55 -169.99 -5.02 15.41 16 26 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 27 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 28 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 29 C -0.24 -5.45 9.14 -39.47 -0.36 -5.81 16 30 C 0.01 0.15 6.71 -39.14 -0.26 -0.11 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.42 8.03 -51.93 -0.42 0.00 16 33 H 0.10 1.12 5.65 -51.93 -0.29 0.83 16 34 H 0.13 0.75 8.05 -52.49 -0.42 0.32 16 35 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 36 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 37 H 0.13 1.16 6.41 -52.49 -0.34 0.82 16 38 H 0.43 5.31 6.04 -182.60 -1.10 4.21 16 39 H 0.43 4.46 7.98 -182.60 -1.46 3.00 16 40 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 42 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 44 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.12 2.83 5.62 -52.49 -0.29 2.53 16 46 H 0.10 1.74 7.23 -52.49 -0.38 1.36 16 LS Contribution 393.14 15.07 5.92 5.92 Total: -1.00 -34.22 393.14 -10.21 -44.42 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -7.07 Total: 11.66 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -5.32 Total: -19.20 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 1.14 Total: -36.77 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: 0.14 Total: -21.45 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.22 -10.21 -44.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096646217.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.762 kcal (2) G-P(sol) polarization free energy of solvation -34.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds