Wall clock time and date at job start Tue Mar 31 2020 06:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35948 * 117.00313 * 2 1 4 4 C 1.38127 * 120.00320 * 0.02562 * 3 2 1 5 5 C 1.39896 * 119.84930 * 179.97438 * 4 3 2 6 6 C 1.47092 * 120.07733 * 180.02562 * 5 4 3 7 7 C 1.34781 * 119.99792 * 133.94489 * 6 5 4 8 8 C 1.46544 * 120.00213 * 341.83968 * 7 6 5 9 9 N 1.29485 * 124.89122 * 172.42626 * 8 7 6 10 10 C 1.33744 * 118.00428 * 179.97438 * 9 8 7 11 11 C 1.41337 * 128.71738 * 180.02562 * 10 9 8 12 12 C 1.36083 * 120.54153 * 180.02562 * 11 10 9 13 13 C 1.50694 * 119.60272 * 179.97438 * 12 11 10 14 14 C 1.38802 * 120.79672 * 0.02562 * 12 11 10 15 15 C 1.37690 * 120.02163 * 359.95887 * 14 12 11 16 16 C 1.39350 * 120.04926 * 0.03739 * 15 14 12 17 17 S 1.75847 * 124.88409 * 352.12717 * 8 7 6 18 18 C 1.39965 * 119.84539 * 0.02562 * 5 4 3 19 19 C 1.37699 * 120.00630 * 359.97438 * 18 5 4 20 20 C 1.39021 * 120.15442 * 0.25325 * 19 18 5 21 21 O 1.35659 * 119.92365 * 179.74906 * 20 19 18 22 22 C 1.34776 * 117.00107 * 6.01792 * 21 20 19 23 23 H 1.08004 * 120.00084 * 5.41160 * 22 21 20 24 24 C 1.38637 * 120.00426 * 185.40409 * 22 21 20 25 25 N 1.31567 * 119.99787 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00582 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47040 * 59.99913 * 26 24 22 28 28 H 1.48497 * 109.47269 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.46950 * 300.00150 * 26 24 22 30 30 H 1.08997 * 109.47449 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46599 * 299.99863 * 1 2 3 32 32 H 1.08997 * 109.47339 * 59.99478 * 1 2 3 33 33 H 1.08003 * 120.07237 * 359.97438 * 4 3 2 34 34 H 1.07999 * 120.00287 * 313.94816 * 6 5 4 35 35 H 1.07996 * 119.99961 * 161.84561 * 7 6 5 36 36 H 1.08001 * 119.72707 * 359.97438 * 11 10 9 37 37 H 1.08993 * 109.47320 * 89.99867 * 13 12 11 38 38 H 1.09001 * 109.47258 * 210.00134 * 13 12 11 39 39 H 1.08999 * 109.47058 * 330.00127 * 13 12 11 40 40 H 1.08003 * 119.99323 * 179.97438 * 14 12 11 41 41 H 1.07995 * 119.97541 * 180.02562 * 15 14 12 42 42 H 1.08002 * 119.99710 * 180.02562 * 18 5 4 43 43 H 1.08000 * 119.92615 * 179.97438 * 19 18 5 44 44 H 0.96999 * 120.00170 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2941 2.3698 0.0005 5 6 1.9326 3.6145 0.0011 6 6 1.1366 4.8514 0.0022 7 6 1.4534 5.8559 0.8432 8 6 2.3034 5.5957 2.0082 9 7 2.7799 6.5065 2.7956 10 6 3.5426 6.1133 3.8215 11 6 4.1715 6.9043 4.8096 12 6 4.9183 6.3239 5.7881 13 6 5.5799 7.1876 6.8307 14 6 5.0787 4.9460 5.8367 15 6 4.4781 4.1486 4.8884 16 6 3.7095 4.7239 3.8784 17 16 2.8171 4.0010 2.5422 18 6 3.3307 3.6802 0.0005 19 6 4.0745 2.5213 0.0000 20 6 3.4401 1.2843 -0.0053 21 8 4.1775 0.1457 -0.0110 22 6 5.5126 0.2806 0.1148 23 1 5.9418 1.2540 0.3015 24 6 6.3351 -0.8300 0.0046 25 7 5.8124 -2.0157 -0.2232 26 14 8.1855 -0.6431 0.1796 27 1 8.5027 -0.0935 1.5223 28 1 8.8341 -1.9695 0.0212 29 1 8.6905 0.2825 -0.8661 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 0.2155 2.3147 0.0005 34 1 0.2982 4.9547 -0.6707 35 1 1.0807 6.8526 0.6585 36 1 4.0592 7.9782 4.7874 37 1 4.9037 7.3203 7.6751 38 1 6.4971 6.7073 7.1717 39 1 5.8177 8.1600 6.3994 40 1 5.6745 4.4991 6.6189 41 1 4.6031 3.0767 4.9272 42 1 3.8262 4.6398 0.0014 43 1 5.1533 2.5735 -0.0008 44 1 6.3878 -2.7927 -0.3006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096765999.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:09 Heat of formation + Delta-G solvation = 39.589830 kcal Electronic energy + Delta-G solvation = -29660.646161 eV Core-core repulsion = 25636.313827 eV Total energy + Delta-G solvation = -4024.332335 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.103 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.06937 -39.78743 -37.67179 -37.45854 -36.56655 -33.64080 -32.41610 -32.14284 -30.07347 -29.65267 -28.53205 -26.92441 -26.58267 -25.54787 -24.57635 -22.53247 -22.06821 -21.72470 -20.53603 -19.34653 -18.19754 -17.92812 -17.28728 -16.50187 -16.27384 -15.67193 -15.38022 -15.22079 -14.82364 -14.65263 -14.56178 -14.22605 -13.98135 -13.74462 -13.64053 -13.58269 -13.45934 -13.36129 -12.75544 -12.48848 -12.39231 -12.13093 -11.86720 -11.77903 -11.62315 -11.54003 -11.41767 -11.23018 -11.04853 -10.87909 -10.69458 -10.50074 -10.20009 -9.82537 -9.64482 -9.45268 -9.33913 -8.94045 -8.25934 -7.99275 -7.53820 -6.85271 -6.60868 -4.12903 0.24562 1.26964 1.49675 1.62782 1.95966 2.27413 2.34285 2.97691 3.06177 3.08241 3.09820 3.82925 3.84034 3.92336 4.04396 4.34018 4.75696 4.79469 4.92299 4.97182 5.06249 5.11297 5.14648 5.36010 5.42739 5.44103 5.45948 5.50568 5.54912 5.58749 5.62305 5.74030 5.80041 5.82140 5.98295 6.03682 6.17181 6.23222 6.28571 6.30804 6.42776 6.50427 6.56189 6.80292 6.83448 6.93730 7.06505 7.16743 7.43872 7.79543 7.86438 8.05804 8.82647 9.50898 10.54966 Molecular weight = 367.10amu Principal moments of inertia in cm(-1) A = 0.007793 B = 0.003778 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3591.947747 B = 7408.865972 C = 9953.586160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.051 3.949 4 C -0.133 4.133 5 C -0.180 4.180 6 C -0.023 4.023 7 C -0.136 4.136 8 C 0.146 3.854 9 N -0.483 5.483 10 C 0.089 3.911 11 C -0.076 4.076 12 C -0.083 4.083 13 C -0.110 4.110 14 C -0.113 4.113 15 C -0.064 4.064 16 C -0.219 4.219 17 S 0.145 5.855 18 C -0.046 4.046 19 C -0.216 4.216 20 C 0.151 3.849 21 O -0.148 6.148 22 C -0.389 4.389 23 H 0.096 0.904 24 C 0.043 3.957 25 N -0.846 5.846 26 Si 0.941 3.059 27 H -0.267 1.267 28 H -0.276 1.276 29 H -0.267 1.267 30 H 0.091 0.909 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.123 0.877 34 H 0.131 0.869 35 H 0.142 0.858 36 H 0.126 0.874 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.110 0.890 43 H 0.137 0.863 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.093 12.899 6.858 15.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.217 6.217 3 C 0.006 3.994 4 C -0.153 4.153 5 C -0.185 4.185 6 C -0.047 4.047 7 C -0.157 4.157 8 C -0.132 4.132 9 N -0.197 5.197 10 C -0.034 4.034 11 C -0.097 4.097 12 C -0.086 4.086 13 C -0.167 4.167 14 C -0.135 4.135 15 C -0.086 4.086 16 C -0.337 4.337 17 S 0.410 5.590 18 C -0.068 4.068 19 C -0.236 4.236 20 C 0.094 3.906 21 O -0.049 6.049 22 C -0.464 4.464 23 H 0.113 0.887 24 C -0.164 4.164 25 N -0.478 5.478 26 Si 0.765 3.235 27 H -0.192 1.192 28 H -0.200 1.200 29 H -0.192 1.192 30 H 0.110 0.890 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.141 0.859 34 H 0.149 0.851 35 H 0.159 0.841 36 H 0.144 0.856 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.128 0.872 43 H 0.154 0.846 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.258 11.717 6.436 14.760 hybrid contribution 1.068 0.843 0.604 1.489 sum -5.190 12.560 7.040 15.305 Atomic orbital electron populations 1.22906 0.80271 1.03038 1.00326 1.86239 1.19476 1.26231 1.89720 1.18016 0.89361 0.84546 1.07476 1.20758 0.98501 0.90634 1.05423 1.18197 0.92785 0.92052 1.15482 1.22212 0.95580 0.91466 0.95439 1.21117 1.01369 0.99978 0.93279 1.25766 0.98259 0.91017 0.98166 1.66436 1.12542 1.35565 1.05146 1.18964 0.98855 0.90365 0.95241 1.20216 0.97344 0.99185 0.92966 1.19326 0.98356 0.94233 0.96703 1.20770 1.00076 0.98838 0.96992 1.20968 1.00535 0.92904 0.99059 1.20389 0.95680 0.99954 0.92593 1.24758 1.07117 0.98221 1.03626 1.86560 1.47605 1.08423 1.16375 1.20713 0.92155 0.97715 0.96200 1.20736 1.00640 0.90495 1.11761 1.18821 0.88267 0.87548 0.95917 1.84025 1.19673 1.25629 1.75536 1.21425 0.78529 0.96467 1.50025 0.88703 1.25361 1.00661 0.94250 0.96122 1.70052 1.36552 0.98796 1.42430 0.85771 0.80022 0.78246 0.79467 1.19242 1.20050 1.19218 0.89029 0.93518 0.93476 0.85886 0.85089 0.84073 0.85575 0.91202 0.91385 0.91540 0.85318 0.85390 0.87177 0.84564 0.91586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.81 101.05 0.99 1.42 16 2 O -0.30 -6.23 10.28 -34.19 -0.35 -6.58 16 3 C 0.05 1.05 6.70 -39.12 -0.26 0.79 16 4 C -0.13 -2.23 8.77 -39.00 -0.34 -2.57 16 5 C -0.18 -2.89 3.60 -105.04 -0.38 -3.27 16 6 C -0.02 -0.30 9.75 -37.22 -0.36 -0.66 16 7 C -0.14 -1.81 9.99 -37.46 -0.37 -2.18 16 8 C 0.15 2.36 6.49 -15.19 -0.10 2.26 16 9 N -0.48 -8.28 10.58 -8.85 -0.09 -8.37 16 10 C 0.09 1.48 6.93 -85.18 -0.59 0.89 16 11 C -0.08 -1.07 9.66 -39.18 -0.38 -1.44 16 12 C -0.08 -1.00 5.83 -105.19 -0.61 -1.61 16 13 C -0.11 -0.92 9.98 36.00 0.36 -0.56 16 14 C -0.11 -1.41 9.68 -39.57 -0.38 -1.79 16 15 C -0.06 -0.95 10.07 -39.37 -0.40 -1.35 16 16 C -0.22 -3.70 6.54 -38.49 -0.25 -3.95 16 17 S 0.14 2.48 17.50 -107.50 -1.88 0.60 16 18 C -0.05 -0.81 6.08 -39.13 -0.24 -1.05 16 19 C -0.22 -4.45 8.78 -39.49 -0.35 -4.79 16 20 C 0.15 3.50 6.67 -38.79 -0.26 3.24 16 21 O -0.15 -4.08 9.52 -14.13 -0.13 -4.22 16 22 C -0.39 -10.40 9.43 30.88 0.29 -10.11 16 23 H 0.10 2.33 5.28 -52.48 -0.28 2.05 16 24 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 25 N -0.85 -23.96 13.67 55.48 0.76 -23.20 16 26 Si 0.94 19.73 29.55 -169.99 -5.02 14.71 16 27 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 28 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 29 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 30 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 32 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 33 H 0.12 1.69 6.28 -52.48 -0.33 1.36 16 34 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.14 1.57 8.06 -52.49 -0.42 1.14 16 36 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 39 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 40 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 41 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 42 H 0.11 1.84 7.58 -52.49 -0.40 1.45 16 43 H 0.14 2.82 5.70 -52.49 -0.30 2.52 16 44 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 383.87 15.07 5.78 5.78 Total: -1.00 -31.90 383.87 -9.70 -41.60 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -5.03 Total: 5.38 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: -3.73 Total: -25.70 kcal Atomic # 7 Polarization: -32.24 SS G_CDS: 0.66 Total: -31.57 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -0.49 Total: -10.80 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -1.88 Total: 0.60 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.90 -9.70 -41.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096765999.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.186 kcal (2) G-P(sol) polarization free energy of solvation -31.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds