Wall clock time and date at job start Tue Mar 31 2020 06:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46500 * 119.99884 * 2 1 4 4 C 1.50702 * 109.46743 * 274.93292 * 3 2 1 5 5 C 1.35025 * 126.05304 * 355.01528 * 4 3 2 6 6 N 1.35896 * 107.90538 * 180.02562 * 5 4 3 7 7 C 1.40076 * 125.97706 * 179.97438 * 6 5 4 8 8 C 1.38871 * 120.06935 * 359.72772 * 7 6 5 9 9 C 1.38107 * 119.93318 * 180.27444 * 8 7 6 10 10 C 1.38291 * 120.06665 * 0.02562 * 9 8 7 11 11 C 1.38283 * 120.14195 * 359.97438 * 10 9 8 12 12 C 1.38111 * 120.06474 * 359.97438 * 11 10 9 13 13 N 1.40079 * 108.04846 * 0.22800 * 6 5 4 14 14 C 1.31815 * 108.13036 * 359.62111 * 13 6 5 15 15 C 1.47858 * 125.99039 * 180.17567 * 14 13 6 16 16 C 1.34779 * 125.26984 * 320.18908 * 15 14 13 17 17 C 1.38007 * 114.70218 * 180.02562 * 16 15 14 18 18 C 1.33582 * 115.05905 * 0.02562 * 17 16 15 19 19 S 1.75857 * 109.76760 * 359.73189 * 18 17 16 20 20 C 1.34772 * 119.99959 * 179.97438 * 2 1 3 21 21 O 1.21692 * 120.00153 * 180.02562 * 20 2 1 22 22 C 1.46379 * 120.00313 * 0.02562 * 20 2 1 23 23 H 1.08002 * 119.99462 * 0.02562 * 22 20 2 24 24 C 1.40048 * 120.00025 * 179.97438 * 22 20 2 25 25 N 1.30670 * 119.99939 * 0.02562 * 24 22 20 26 26 Si 1.86804 * 119.99690 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47000 * 60.00160 * 26 24 22 28 28 H 1.48496 * 109.46762 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47334 * 299.99937 * 26 24 22 30 30 H 1.08997 * 109.46450 * 95.29741 * 1 2 3 31 31 H 1.08999 * 109.47129 * 215.29133 * 1 2 3 32 32 H 1.08994 * 109.47152 * 335.29633 * 1 2 3 33 33 H 1.08997 * 109.47109 * 154.93273 * 3 2 1 34 34 H 1.08999 * 109.47152 * 34.92857 * 3 2 1 35 35 H 1.08004 * 126.05239 * 0.07812 * 5 4 3 36 36 H 1.08001 * 120.03542 * 0.24798 * 8 7 6 37 37 H 1.08005 * 119.96683 * 180.02562 * 9 8 7 38 38 H 1.08003 * 119.92745 * 180.02562 * 10 9 8 39 39 H 1.07992 * 119.96490 * 180.02562 * 11 10 9 40 40 H 1.08005 * 120.03144 * 180.02562 * 12 11 10 41 41 H 1.08008 * 122.64553 * 0.02843 * 16 15 14 42 42 H 1.07998 * 122.46453 * 180.02562 * 17 16 15 43 43 H 1.07996 * 125.11636 * 180.02562 * 18 17 16 44 44 H 0.97000 * 119.99438 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3428 1.7648 -1.4156 5 6 1.9617 1.1067 -2.5313 6 7 2.2642 1.8881 -3.6012 7 6 2.0300 1.5699 -4.9451 8 6 1.4424 0.3572 -5.2808 9 6 1.2180 0.0439 -6.6070 10 6 1.5783 0.9361 -7.6003 11 6 2.1636 2.1445 -7.2693 12 6 2.3897 2.4640 -5.9448 13 7 2.8565 3.0650 -3.1254 14 6 2.9018 2.9985 -1.8097 15 6 3.4472 4.0337 -0.9057 16 6 4.5601 4.7587 -1.1344 17 6 4.8709 5.6666 -0.1426 18 6 4.0241 5.6882 0.8903 19 16 2.7409 4.5138 0.6320 20 6 2.1389 -1.1672 0.0005 21 8 3.3558 -1.1672 0.0010 22 6 1.4071 -2.4349 0.0005 23 1 0.3271 -2.4348 -0.0003 24 6 2.1074 -3.6477 0.0005 25 7 3.4141 -3.6476 0.0010 26 14 1.1733 -5.2655 -0.0002 27 1 0.3201 -5.3438 -1.2131 28 1 2.1384 -6.3941 -0.0007 29 1 0.3191 -5.3444 1.2119 30 1 -0.3632 -0.0949 -1.0233 31 1 -0.3633 -0.8388 0.5937 32 1 -0.3633 0.9336 0.4295 33 1 3.1853 1.1180 0.4354 34 1 1.6495 2.0047 0.5884 35 1 1.4976 0.1321 -2.5672 36 1 1.1615 -0.3403 -4.5056 37 1 0.7606 -0.8988 -6.8687 38 1 1.4014 0.6890 -8.6366 39 1 2.4435 2.8393 -8.0472 40 1 2.8465 3.4081 -5.6869 41 1 5.1612 4.6385 -2.0237 42 1 5.7350 6.3121 -0.1976 43 1 4.1115 6.3334 1.7519 44 1 3.8990 -4.4877 0.0007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097096721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:18 Heat of formation + Delta-G solvation = 116.740510 kcal Electronic energy + Delta-G solvation = -29733.228215 eV Core-core repulsion = 25744.534136 eV Total energy + Delta-G solvation = -3988.694079 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.110 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.35946 -39.04384 -37.69323 -37.55439 -34.31965 -33.51101 -32.47500 -31.28494 -30.56685 -30.28639 -28.26028 -26.96942 -25.92446 -24.74318 -24.36744 -22.78023 -22.43585 -20.82777 -20.13918 -18.99105 -18.77997 -18.01295 -17.05843 -16.50331 -16.14281 -15.63886 -15.58441 -15.10203 -14.87467 -14.67312 -14.33943 -14.16861 -13.77172 -13.68518 -13.51268 -13.18692 -13.03148 -12.69391 -12.53181 -12.44525 -12.21649 -11.91762 -11.74167 -11.69042 -11.49506 -11.46112 -11.25796 -11.17273 -10.95904 -10.80588 -10.62126 -10.34720 -10.20290 -10.15986 -9.11982 -8.90695 -8.89035 -8.51829 -8.45188 -7.70051 -7.60957 -7.33491 -6.22917 -4.69496 0.62950 1.03096 1.23493 1.49198 1.98540 2.29392 2.50558 2.66069 3.11702 3.17565 3.18012 3.18858 3.73345 4.04193 4.38136 4.47024 4.53728 4.71683 4.78401 4.96293 5.03566 5.10846 5.20481 5.26579 5.43408 5.50048 5.57554 5.62428 5.74702 5.79422 5.87276 5.88216 5.98905 6.06277 6.13744 6.20598 6.28648 6.31694 6.37326 6.37853 6.45391 6.50607 6.58338 6.63848 6.76744 7.31367 7.40113 7.55547 7.73282 8.08525 8.30248 8.98066 9.37536 10.53839 10.72532 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.006111 B = 0.004115 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4580.850177 B = 6802.158901 C =10546.070870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.647 5.647 3 C 0.199 3.801 4 C -0.206 4.206 5 C 0.080 3.920 6 N -0.328 5.328 7 C 0.174 3.826 8 C -0.140 4.140 9 C -0.090 4.090 10 C -0.138 4.138 11 C -0.098 4.098 12 C -0.127 4.127 13 N -0.275 5.275 14 C 0.147 3.853 15 C -0.104 4.104 16 C -0.113 4.113 17 C -0.134 4.134 18 C -0.220 4.220 19 S 0.147 5.853 20 C 0.555 3.445 21 O -0.571 6.571 22 C -0.544 4.544 23 H 0.072 0.928 24 C 0.088 3.912 25 N -0.765 5.765 26 Si 0.905 3.095 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.267 1.267 30 H 0.029 0.971 31 H 0.069 0.931 32 H 0.043 0.957 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.182 0.818 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.135 0.865 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.166 0.834 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.278 14.445 -7.446 16.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.385 5.385 3 C 0.073 3.927 4 C -0.218 4.218 5 C -0.059 4.059 6 N -0.104 5.104 7 C 0.081 3.919 8 C -0.161 4.161 9 C -0.109 4.109 10 C -0.157 4.157 11 C -0.116 4.116 12 C -0.147 4.147 13 N -0.096 5.096 14 C -0.020 4.020 15 C -0.223 4.223 16 C -0.146 4.146 17 C -0.164 4.164 18 C -0.357 4.357 19 S 0.411 5.589 20 C 0.360 3.640 21 O -0.453 6.453 22 C -0.580 4.580 23 H 0.090 0.910 24 C -0.132 4.132 25 N -0.393 5.393 26 Si 0.729 3.271 27 H -0.193 1.193 28 H -0.206 1.206 29 H -0.192 1.192 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.107 0.893 34 H 0.080 0.920 35 H 0.199 0.801 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.153 0.847 41 H 0.159 0.841 42 H 0.159 0.841 43 H 0.183 0.817 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.463 14.531 -7.666 17.024 hybrid contribution 0.585 -0.930 -0.170 1.111 sum -3.879 13.601 -7.836 16.169 Atomic orbital electron populations 1.21382 0.82063 1.00797 0.99818 1.48000 1.05145 1.05060 1.80322 1.19326 0.98644 0.86027 0.88686 1.20980 1.07941 0.94500 0.98387 1.22444 1.00791 0.97725 0.84985 1.45738 1.46624 1.14050 1.03998 1.17582 0.99180 0.95051 0.80116 1.20972 1.01761 0.95390 0.98009 1.20982 0.98756 0.99605 0.91510 1.21183 1.00450 0.94508 0.99540 1.21011 0.98332 0.96985 0.95316 1.20880 1.02120 1.00001 0.91712 1.77563 1.19082 1.03115 1.09820 1.19597 0.99089 0.93109 0.90241 1.21748 1.00517 1.01566 0.98486 1.20345 0.96918 0.96387 1.00935 1.20018 1.01432 1.01004 0.93986 1.25802 1.00410 1.05316 1.04148 1.84290 1.26750 1.33053 1.14758 1.18285 0.87021 0.82146 0.76504 1.90623 1.13982 1.86075 1.54612 1.20959 0.93652 0.89140 1.54283 0.91011 1.25725 0.94576 1.00248 0.92658 1.70011 1.07043 1.27415 1.34875 0.86482 0.79880 0.81235 0.79475 1.19301 1.20579 1.19219 0.95231 0.91220 0.93782 0.89314 0.92032 0.80076 0.84798 0.84997 0.85657 0.85369 0.84699 0.84094 0.84137 0.81682 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.84 10.03 59.85 0.60 2.44 16 2 N -0.65 -14.18 2.07 -184.63 -0.38 -14.56 16 3 C 0.20 3.98 5.41 -5.19 -0.03 3.95 16 4 C -0.21 -4.01 6.09 -104.69 -0.64 -4.65 16 5 C 0.08 1.53 10.08 -16.89 -0.17 1.36 16 6 N -0.33 -5.91 3.81 -10.62 -0.04 -5.95 16 7 C 0.17 2.72 6.69 -83.62 -0.56 2.16 16 8 C -0.14 -1.97 9.46 -39.40 -0.37 -2.35 16 9 C -0.09 -1.02 10.04 -39.61 -0.40 -1.42 16 10 C -0.14 -1.40 10.04 -39.55 -0.40 -1.80 16 11 C -0.10 -1.05 10.04 -39.61 -0.40 -1.45 16 12 C -0.13 -1.72 9.66 -39.40 -0.38 -2.10 16 13 N -0.28 -5.03 11.91 33.37 0.40 -4.63 16 14 C 0.15 2.67 7.01 -82.87 -0.58 2.09 16 15 C -0.10 -1.62 6.20 -36.87 -0.23 -1.85 16 16 C -0.11 -1.56 10.10 -40.89 -0.41 -1.97 16 17 C -0.13 -1.51 10.16 -41.30 -0.42 -1.93 16 18 C -0.22 -2.37 11.22 29.10 0.33 -2.04 16 19 S 0.15 1.90 21.81 -107.50 -2.34 -0.44 16 20 C 0.55 15.16 7.61 -12.99 -0.10 15.06 16 21 O -0.57 -18.06 14.52 5.20 0.08 -17.98 16 22 C -0.54 -14.62 8.73 -35.63 -0.31 -14.93 16 23 H 0.07 1.75 6.11 -52.49 -0.32 1.43 16 24 C 0.09 2.38 5.50 -17.37 -0.10 2.28 16 25 N -0.76 -22.42 11.83 55.55 0.66 -21.76 16 26 Si 0.90 19.51 29.56 -169.99 -5.02 14.49 16 27 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 28 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 29 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 1.25 6.41 -51.93 -0.33 0.92 16 32 H 0.04 0.65 7.89 -51.93 -0.41 0.25 16 33 H 0.09 2.01 7.28 -51.93 -0.38 1.64 16 34 H 0.06 1.06 6.88 -51.93 -0.36 0.70 16 35 H 0.18 3.53 6.76 -52.48 -0.35 3.17 16 36 H 0.13 1.90 6.73 -52.49 -0.35 1.54 16 37 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 38 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 39 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.14 1.83 7.69 -52.48 -0.40 1.42 16 41 H 0.14 1.87 8.06 -52.48 -0.42 1.45 16 42 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 43 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 44 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 LS Contribution 391.45 15.07 5.90 5.90 Total: -1.00 -34.77 391.45 -10.33 -45.10 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -5.00 Total: 6.98 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -4.56 Total: -7.13 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: 0.63 Total: -46.91 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: 0.08 Total: -17.98 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -2.34 Total: -0.44 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.77 -10.33 -45.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097096721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.842 kcal (2) G-P(sol) polarization free energy of solvation -34.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds