Wall clock time and date at job start Tue Mar 31 2020 06:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46500 * 119.99884 * 2 1 4 4 C 1.50702 * 109.46743 * 274.93292 * 3 2 1 5 5 C 1.35025 * 126.05304 * 355.01528 * 4 3 2 6 6 N 1.35896 * 107.90538 * 180.02562 * 5 4 3 7 7 C 1.40076 * 125.97706 * 179.97438 * 6 5 4 8 8 C 1.38871 * 120.06935 * 359.72772 * 7 6 5 9 9 C 1.38107 * 119.93318 * 180.27444 * 8 7 6 10 10 C 1.38291 * 120.06665 * 0.02562 * 9 8 7 11 11 C 1.38283 * 120.14195 * 359.97438 * 10 9 8 12 12 C 1.38111 * 120.06474 * 359.97438 * 11 10 9 13 13 N 1.40079 * 108.04846 * 0.22800 * 6 5 4 14 14 C 1.31815 * 108.13036 * 359.62111 * 13 6 5 15 15 C 1.47858 * 125.99039 * 180.17567 * 14 13 6 16 16 C 1.34779 * 125.26984 * 320.18908 * 15 14 13 17 17 C 1.38007 * 114.70218 * 180.02562 * 16 15 14 18 18 C 1.33582 * 115.05905 * 0.02562 * 17 16 15 19 19 S 1.75857 * 109.76760 * 359.73189 * 18 17 16 20 20 C 1.34772 * 119.99959 * 179.97438 * 2 1 3 21 21 O 1.21692 * 120.00153 * 180.02562 * 20 2 1 22 22 C 1.46379 * 120.00313 * 0.02562 * 20 2 1 23 23 H 1.08002 * 119.99462 * 0.02562 * 22 20 2 24 24 C 1.40048 * 120.00025 * 179.97438 * 22 20 2 25 25 N 1.30670 * 119.99939 * 0.02562 * 24 22 20 26 26 Si 1.86804 * 119.99690 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47000 * 60.00160 * 26 24 22 28 28 H 1.48496 * 109.46762 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47334 * 299.99937 * 26 24 22 30 30 H 1.08997 * 109.46450 * 95.29741 * 1 2 3 31 31 H 1.08999 * 109.47129 * 215.29133 * 1 2 3 32 32 H 1.08994 * 109.47152 * 335.29633 * 1 2 3 33 33 H 1.08997 * 109.47109 * 154.93273 * 3 2 1 34 34 H 1.08999 * 109.47152 * 34.92857 * 3 2 1 35 35 H 1.08004 * 126.05239 * 0.07812 * 5 4 3 36 36 H 1.08001 * 120.03542 * 0.24798 * 8 7 6 37 37 H 1.08005 * 119.96683 * 180.02562 * 9 8 7 38 38 H 1.08003 * 119.92745 * 180.02562 * 10 9 8 39 39 H 1.07992 * 119.96490 * 180.02562 * 11 10 9 40 40 H 1.08005 * 120.03144 * 180.02562 * 12 11 10 41 41 H 1.08008 * 122.64553 * 0.02843 * 16 15 14 42 42 H 1.07998 * 122.46453 * 180.02562 * 17 16 15 43 43 H 1.07996 * 125.11636 * 180.02562 * 18 17 16 44 44 H 0.97000 * 119.99438 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3428 1.7648 -1.4156 5 6 1.9617 1.1067 -2.5313 6 7 2.2642 1.8881 -3.6012 7 6 2.0300 1.5699 -4.9451 8 6 1.4424 0.3572 -5.2808 9 6 1.2180 0.0439 -6.6070 10 6 1.5783 0.9361 -7.6003 11 6 2.1636 2.1445 -7.2693 12 6 2.3897 2.4640 -5.9448 13 7 2.8565 3.0650 -3.1254 14 6 2.9018 2.9985 -1.8097 15 6 3.4472 4.0337 -0.9057 16 6 4.5601 4.7587 -1.1344 17 6 4.8709 5.6666 -0.1426 18 6 4.0241 5.6882 0.8903 19 16 2.7409 4.5138 0.6320 20 6 2.1389 -1.1672 0.0005 21 8 3.3558 -1.1672 0.0010 22 6 1.4071 -2.4349 0.0005 23 1 0.3271 -2.4348 -0.0003 24 6 2.1074 -3.6477 0.0005 25 7 3.4141 -3.6476 0.0010 26 14 1.1733 -5.2655 -0.0002 27 1 0.3201 -5.3438 -1.2131 28 1 2.1384 -6.3941 -0.0007 29 1 0.3191 -5.3444 1.2119 30 1 -0.3632 -0.0949 -1.0233 31 1 -0.3633 -0.8388 0.5937 32 1 -0.3633 0.9336 0.4295 33 1 3.1853 1.1180 0.4354 34 1 1.6495 2.0047 0.5884 35 1 1.4976 0.1321 -2.5672 36 1 1.1615 -0.3403 -4.5056 37 1 0.7606 -0.8988 -6.8687 38 1 1.4014 0.6890 -8.6366 39 1 2.4435 2.8393 -8.0472 40 1 2.8465 3.4081 -5.6869 41 1 5.1612 4.6385 -2.0237 42 1 5.7350 6.3121 -0.1976 43 1 4.1115 6.3334 1.7519 44 1 3.8990 -4.4877 0.0007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097096721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:17 Heat of formation + Delta-G solvation = 97.628298 kcal Electronic energy + Delta-G solvation = -29734.056983 eV Core-core repulsion = 25744.534136 eV Total energy + Delta-G solvation = -3989.522847 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.110 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.71161 -40.11751 -39.53393 -38.59957 -36.11706 -34.81431 -34.57694 -32.43856 -31.79910 -31.46736 -29.45810 -28.65525 -27.65780 -26.17156 -25.66734 -23.83152 -23.60568 -22.07290 -21.57186 -20.64755 -19.86598 -19.28586 -18.42418 -18.11655 -17.63566 -17.13195 -16.69150 -16.46585 -16.28730 -15.96291 -15.85669 -15.64627 -15.20649 -14.88308 -14.49947 -14.41857 -14.26489 -14.09910 -13.74807 -13.69531 -13.47057 -13.34308 -13.25396 -13.21006 -13.06210 -12.99316 -12.69665 -12.64923 -12.31524 -12.20094 -12.06426 -11.90379 -11.79394 -11.37420 -10.90403 -10.13379 -10.08838 -9.78991 -9.72350 -9.45427 -9.17908 -8.90450 -8.26843 -6.82884 -0.47907 -0.03726 0.26998 0.44325 1.00722 1.07065 1.25038 1.40621 1.43495 1.48603 1.54965 1.95300 2.23928 2.47919 2.73540 2.79152 3.17505 3.52384 3.62852 3.76114 3.88153 4.01789 4.16510 4.19782 4.24571 4.31401 4.36915 4.45999 4.51977 4.55689 4.57927 4.64382 4.67736 4.86528 4.95372 4.97817 5.03365 5.06374 5.14695 5.28319 5.33584 5.37393 5.41645 5.45394 5.49090 5.71787 5.74756 6.06429 6.13706 6.32861 6.42331 6.89597 7.42485 8.49525 8.69381 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.006111 B = 0.004115 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4580.850177 B = 6802.158901 C =10546.070870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.646 5.646 3 C 0.210 3.790 4 C -0.227 4.227 5 C 0.070 3.930 6 N -0.327 5.327 7 C 0.132 3.868 8 C -0.158 4.158 9 C -0.089 4.089 10 C -0.123 4.123 11 C -0.091 4.091 12 C -0.138 4.138 13 N -0.287 5.287 14 C 0.146 3.854 15 C -0.149 4.149 16 C -0.109 4.109 17 C -0.142 4.142 18 C -0.196 4.196 19 S 0.140 5.860 20 C 0.542 3.458 21 O -0.628 6.628 22 C -0.564 4.564 23 H 0.095 0.905 24 C 0.031 3.969 25 N -0.821 5.821 26 Si 0.991 3.009 27 H -0.253 1.253 28 H -0.279 1.279 29 H -0.253 1.253 30 H 0.039 0.961 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.090 0.910 35 H 0.171 0.829 36 H 0.120 0.880 37 H 0.158 0.842 38 H 0.166 0.834 39 H 0.163 0.837 40 H 0.128 0.872 41 H 0.138 0.862 42 H 0.174 0.826 43 H 0.203 0.797 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.917 15.234 -8.730 18.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.382 5.382 3 C 0.085 3.915 4 C -0.239 4.239 5 C -0.071 4.071 6 N -0.103 5.103 7 C 0.040 3.960 8 C -0.178 4.178 9 C -0.108 4.108 10 C -0.141 4.141 11 C -0.109 4.109 12 C -0.158 4.158 13 N -0.109 5.109 14 C -0.021 4.021 15 C -0.268 4.268 16 C -0.142 4.142 17 C -0.171 4.171 18 C -0.332 4.332 19 S 0.404 5.596 20 C 0.348 3.652 21 O -0.514 6.514 22 C -0.601 4.601 23 H 0.113 0.887 24 C -0.184 4.184 25 N -0.451 5.451 26 Si 0.811 3.189 27 H -0.177 1.177 28 H -0.204 1.204 29 H -0.177 1.177 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.188 0.812 36 H 0.138 0.862 37 H 0.176 0.824 38 H 0.184 0.816 39 H 0.181 0.819 40 H 0.146 0.854 41 H 0.156 0.844 42 H 0.191 0.809 43 H 0.220 0.780 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.163 15.368 -8.976 18.834 hybrid contribution 1.109 -1.045 0.122 1.528 sum -5.054 14.323 -8.854 17.581 Atomic orbital electron populations 1.21573 0.79272 1.02547 1.00806 1.47806 1.06918 1.04423 1.79004 1.19227 0.97011 0.85683 0.89593 1.20942 1.09490 0.95558 0.97899 1.22313 1.01403 0.97515 0.85858 1.45923 1.46104 1.13569 1.04718 1.18039 1.01802 0.96681 0.79472 1.21080 1.02612 0.94871 0.99279 1.21360 0.98113 1.00931 0.90381 1.21675 0.97985 0.93331 1.01118 1.21436 0.97014 0.97867 0.94588 1.21022 1.02507 0.99518 0.92723 1.77486 1.19707 1.03550 1.10111 1.19892 0.98551 0.93240 0.90422 1.21876 1.02306 1.02759 0.99837 1.20606 0.96022 0.96157 1.01452 1.20282 1.02695 1.00934 0.93238 1.26270 0.98325 1.03871 1.04724 1.84192 1.27939 1.34087 1.13376 1.18643 0.86557 0.83951 0.76015 1.90574 1.16389 1.87355 1.57103 1.21468 0.94869 0.89509 1.54214 0.88748 1.26952 0.95374 1.04824 0.91281 1.70207 1.09566 1.28788 1.36504 0.85162 0.78276 0.75052 0.80424 1.17655 1.20357 1.17708 0.94196 0.91310 0.90486 0.92911 0.89204 0.81188 0.86214 0.82425 0.81639 0.81941 0.85399 0.84410 0.80908 0.77970 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.56 10.03 127.77 1.28 4.85 16 2 N -0.65 -29.48 2.07 -856.26 -1.78 -31.26 16 3 C 0.21 8.90 5.41 85.63 0.46 9.37 16 4 C -0.23 -9.44 6.09 -19.91 -0.12 -9.56 16 5 C 0.07 2.90 10.08 83.32 0.84 3.74 16 6 N -0.33 -12.63 3.81 -187.52 -0.71 -13.34 16 7 C 0.13 4.33 6.69 38.12 0.25 4.59 16 8 C -0.16 -4.59 9.46 22.39 0.21 -4.38 16 9 C -0.09 -1.89 10.04 22.25 0.22 -1.66 16 10 C -0.12 -2.09 10.04 22.29 0.22 -1.87 16 11 C -0.09 -1.74 10.04 22.25 0.22 -1.52 16 12 C -0.14 -3.76 9.66 22.39 0.22 -3.55 16 13 N -0.29 -11.17 11.91 -48.34 -0.58 -11.75 16 14 C 0.15 5.62 7.01 42.39 0.30 5.92 16 15 C -0.15 -4.80 6.20 24.02 0.15 -4.66 16 16 C -0.11 -3.01 10.10 21.42 0.22 -2.80 16 17 C -0.14 -2.93 10.16 21.16 0.22 -2.71 16 18 C -0.20 -3.73 11.22 66.76 0.75 -2.98 16 19 S 0.14 3.57 21.81 -56.49 -1.23 2.34 16 20 C 0.54 31.17 7.61 86.36 0.66 31.83 16 21 O -0.63 -42.42 14.52 -4.32 -0.06 -42.48 16 22 C -0.56 -31.09 8.73 24.83 0.22 -30.88 16 23 H 0.09 4.59 6.11 -2.91 -0.02 4.57 16 24 C 0.03 1.70 5.50 85.30 0.47 2.17 16 25 N -0.82 -50.23 11.83 21.84 0.26 -49.97 16 26 Si 0.99 40.21 29.56 68.60 2.03 42.24 16 27 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 28 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 29 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 30 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.07 2.44 6.41 -2.39 -0.02 2.42 16 32 H 0.08 2.20 7.89 -2.39 -0.02 2.18 16 33 H 0.05 2.60 7.28 -2.39 -0.02 2.58 16 34 H 0.09 3.19 6.88 -2.39 -0.02 3.17 16 35 H 0.17 7.27 6.76 -2.91 -0.02 7.25 16 36 H 0.12 3.70 6.73 -2.91 -0.02 3.69 16 37 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 38 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 39 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 40 H 0.13 3.58 7.69 -2.91 -0.02 3.56 16 41 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 42 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 43 H 0.20 2.31 8.06 -2.91 -0.02 2.28 16 44 H 0.27 15.22 8.29 -92.71 -0.77 14.45 16 Total: -1.00 -82.68 391.45 5.76 -76.92 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: 1.04 Total: 31.40 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 6.79 Total: -4.10 kcal Atomic # 7 Polarization: -103.51 SS G_CDS: -2.81 Total: -106.32 kcal Atomic # 8 Polarization: -42.42 SS G_CDS: -0.06 Total: -42.48 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Atomic # 16 Polarization: 3.57 SS G_CDS: -1.23 Total: 2.34 kcal Total: -82.68 5.76 -76.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097096721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.552 kcal (2) G-P(sol) polarization free energy of solvation -82.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds