Wall clock time and date at job start Tue Mar 31 2020 06:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 120.00225 * 2 1 4 4 H 1.48499 * 109.46762 * 270.00117 * 3 2 1 5 5 H 1.48503 * 109.46998 * 29.99482 * 3 2 1 6 6 H 1.48491 * 109.47310 * 150.00018 * 3 2 1 7 7 C 1.37881 * 119.99546 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00280 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99490 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.46772 * 180.02562 * 9 7 2 11 11 O 1.42901 * 109.46995 * 180.02562 * 10 9 7 12 12 C 1.35985 * 116.99944 * 179.97438 * 11 10 9 13 13 C 1.38781 * 120.49818 * 0.02562 * 12 11 10 14 14 C 1.38795 * 118.45157 * 179.97438 * 13 12 11 15 15 C 1.38069 * 119.35504 * 359.97438 * 14 13 12 16 16 N 1.31981 * 120.94961 * 359.72342 * 15 14 13 17 17 C 1.32267 * 121.68503 * 0.56668 * 16 15 14 18 18 N 1.39590 * 119.71938 * 179.71180 * 17 16 15 19 19 C 1.34774 * 120.00326 * 359.72597 * 18 17 16 20 20 O 1.21581 * 119.99643 * 359.97438 * 19 18 17 21 21 N 1.34773 * 119.99940 * 180.02562 * 19 18 17 22 22 C 1.46506 * 119.99969 * 180.02562 * 21 19 18 23 23 H 1.09005 * 110.26411 * 326.79770 * 22 21 19 24 24 C 1.54341 * 110.30302 * 204.72436 * 22 21 19 25 25 C 1.54348 * 102.38995 * 214.72343 * 24 22 21 26 26 C 1.51370 * 105.17021 * 26.34592 * 25 24 22 27 27 C 1.38495 * 130.39471 * 162.79030 * 26 25 24 28 28 C 1.38110 * 120.21671 * 180.02562 * 27 26 25 29 29 C 1.38250 * 119.93454 * 0.02562 * 28 27 26 30 30 C 1.38103 * 119.93527 * 359.97438 * 29 28 27 31 31 C 1.38213 * 109.75707 * 342.81582 * 26 25 24 32 32 H 0.97002 * 119.99457 * 0.02562 * 1 2 3 33 33 H 1.08993 * 109.47271 * 60.00515 * 9 7 2 34 34 H 1.08997 * 109.47008 * 299.99747 * 9 7 2 35 35 H 1.08998 * 109.47600 * 59.99805 * 10 9 7 36 36 H 1.09002 * 109.47189 * 299.99623 * 10 9 7 37 37 H 1.08007 * 120.77812 * 359.94591 * 13 12 11 38 38 H 1.08000 * 120.32039 * 179.97438 * 14 13 12 39 39 H 1.07996 * 119.52354 * 179.97438 * 15 14 13 40 40 H 0.97004 * 119.99633 * 179.73111 * 18 17 16 41 41 H 0.97005 * 120.00161 * 359.72198 * 21 19 18 42 42 H 1.08999 * 110.82256 * 332.94600 * 24 22 21 43 43 H 1.08996 * 110.82747 * 96.29944 * 24 22 21 44 44 H 1.09001 * 110.30390 * 145.26325 * 25 24 22 45 45 H 1.08990 * 110.30547 * 267.32457 * 25 24 22 46 46 H 1.08001 * 119.89795 * 0.03746 * 27 26 25 47 47 H 1.08003 * 120.03159 * 179.97438 * 28 27 26 48 48 H 1.08002 * 120.03362 * 179.97438 * 29 28 27 49 49 H 1.07998 * 119.89498 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6367 0.0010 11 8 5.4505 -2.6367 0.0021 12 6 6.0678 -3.8484 0.0027 13 6 5.3220 -5.0188 0.0017 14 6 5.9959 -6.2322 0.0018 15 6 7.3765 -6.2397 0.0024 16 7 8.0614 -5.1115 -0.0026 17 6 7.4599 -3.9335 0.0028 18 7 8.2248 -2.7659 0.0033 19 6 9.5704 -2.8417 0.0039 20 8 10.1180 -3.9271 0.0044 21 7 10.3088 -1.7142 0.0048 22 6 11.7716 -1.7966 0.0049 23 1 12.1003 -2.6726 0.5642 24 6 12.3801 -0.5145 0.6114 25 6 13.6693 -0.3353 -0.2182 26 6 13.3851 -1.0108 -1.5427 27 6 14.0294 -0.8993 -2.7636 28 6 13.5858 -1.6240 -3.8523 29 6 12.4948 -2.4634 -3.7242 30 6 11.8510 -2.5760 -2.5076 31 6 12.2947 -1.8504 -1.4144 32 1 -0.4849 0.8401 -0.0004 33 1 3.8745 -0.6802 0.8911 34 1 3.8752 -0.6805 -0.8888 35 1 3.6585 -3.1503 -0.8892 36 1 3.6578 -3.1507 0.8908 37 1 4.2425 -4.9862 0.0013 38 1 5.4455 -7.1614 0.0014 39 1 7.9036 -7.1823 0.0029 40 1 7.7878 -1.8998 0.0033 41 1 9.8718 -0.8482 0.0011 42 1 11.7103 0.3345 0.4748 43 1 12.6117 -0.6572 1.6669 44 1 13.8767 0.7239 -0.3708 45 1 14.5102 -0.8167 0.2808 46 1 14.8816 -0.2436 -2.8646 47 1 14.0902 -1.5345 -4.8031 48 1 12.1463 -3.0306 -4.5746 49 1 10.9985 -3.2316 -2.4083 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097164552.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:18 Heat of formation + Delta-G solvation = 8.047256 kcal Electronic energy + Delta-G solvation = -31892.876904 eV Core-core repulsion = 27592.549755 eV Total energy + Delta-G solvation = -4300.327149 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.168 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.11189 -40.51539 -39.26486 -37.87489 -36.39564 -34.78060 -33.75074 -33.45248 -31.68578 -31.22136 -30.76371 -29.34056 -29.07827 -26.80355 -25.63572 -23.63906 -22.98860 -22.80852 -21.47217 -21.24529 -20.77181 -20.47960 -18.79818 -18.15360 -17.67387 -16.78339 -16.62616 -16.25150 -15.99732 -15.87674 -15.41318 -15.34105 -15.06714 -14.81049 -14.38356 -14.27639 -14.00216 -13.90734 -13.78868 -13.40398 -13.15070 -13.08944 -12.95910 -12.57625 -12.23637 -12.17093 -12.09740 -12.01727 -11.65529 -11.34757 -11.25528 -11.08809 -10.99822 -10.75710 -10.47732 -10.31023 -10.16500 -9.94845 -9.45851 -9.34830 -9.19720 -9.11263 -9.00476 -8.80542 -8.70779 -7.69365 -6.21540 -4.23205 1.08431 1.18708 1.23607 1.42307 2.40154 3.14560 3.20937 3.28819 3.31582 3.43690 3.53889 3.85059 4.01108 4.03211 4.26845 4.30556 4.59266 4.64168 4.74554 4.79290 4.85174 4.92929 4.93159 5.03569 5.12212 5.20148 5.25954 5.32442 5.37568 5.44191 5.44817 5.52142 5.67127 5.75539 5.77090 5.78478 5.89542 6.01356 6.14609 6.19390 6.26662 6.29195 6.32788 6.37664 6.46285 6.50911 6.73999 6.78670 6.95083 7.10575 7.49323 7.60238 7.70596 8.20692 8.29628 8.56948 8.78824 9.38063 10.90884 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.008875 B = 0.002286 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3154.271826 B =12246.927584 C =14226.388259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.529 4.529 8 H 0.075 0.925 9 C -0.007 4.007 10 C 0.074 3.926 11 O -0.321 6.321 12 C 0.063 3.937 13 C -0.144 4.144 14 C -0.162 4.162 15 C 0.078 3.922 16 N -0.441 5.441 17 C 0.347 3.653 18 N -0.662 5.662 19 C 0.696 3.304 20 O -0.532 6.532 21 N -0.738 5.738 22 C 0.204 3.796 23 H 0.106 0.894 24 C -0.125 4.125 25 C -0.079 4.079 26 C -0.096 4.096 27 C -0.113 4.113 28 C -0.116 4.116 29 C -0.124 4.124 30 C -0.083 4.083 31 C -0.109 4.109 32 H 0.266 0.734 33 H 0.028 0.972 34 H 0.023 0.977 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.146 0.854 38 H 0.135 0.865 39 H 0.157 0.843 40 H 0.419 0.581 41 H 0.398 0.602 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.119 0.881 47 H 0.122 0.878 48 H 0.122 0.878 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.027 -3.767 -1.930 27.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.567 4.567 8 H 0.093 0.907 9 C -0.045 4.045 10 C 0.000 4.000 11 O -0.234 6.234 12 C 0.012 3.988 13 C -0.171 4.171 14 C -0.184 4.184 15 C -0.079 4.079 16 N -0.156 5.156 17 C 0.114 3.886 18 N -0.312 5.312 19 C 0.396 3.604 20 O -0.403 6.403 21 N -0.395 5.395 22 C 0.099 3.901 23 H 0.124 0.876 24 C -0.163 4.163 25 C -0.116 4.116 26 C -0.096 4.096 27 C -0.131 4.131 28 C -0.134 4.134 29 C -0.142 4.142 30 C -0.101 4.101 31 C -0.110 4.110 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.042 0.958 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.164 0.836 38 H 0.153 0.847 39 H 0.174 0.826 40 H 0.256 0.744 41 H 0.232 0.768 42 H 0.099 0.901 43 H 0.105 0.895 44 H 0.097 0.903 45 H 0.102 0.898 46 H 0.137 0.863 47 H 0.140 0.860 48 H 0.140 0.860 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 28.404 -4.436 -1.907 28.812 hybrid contribution -1.406 1.530 -0.191 2.086 sum 26.998 -2.906 -2.098 27.235 Atomic orbital electron populations 1.69893 1.06282 1.27291 1.49872 1.24943 0.94774 0.99224 0.94073 0.86748 0.80388 0.83309 0.78733 1.20061 1.21152 1.18817 1.20813 0.88233 0.94974 1.52654 0.90714 1.19579 0.97035 0.90008 0.97851 1.23129 0.74020 1.02204 1.00672 1.86043 1.24518 1.24822 1.87985 1.19492 0.90867 0.86993 1.01490 1.21615 1.01221 0.91358 1.02910 1.21900 0.95535 0.98230 1.02701 1.22432 0.91088 0.95590 0.98743 1.67641 1.38257 0.96178 1.13496 1.17475 0.84081 0.86657 1.00434 1.42502 1.04994 1.07988 1.75670 1.15974 0.80987 0.84924 0.78516 1.91036 1.70078 1.25698 1.53482 1.45239 1.06100 1.07595 1.80530 1.20328 0.78024 0.99672 0.92062 0.87581 1.22615 0.96761 0.96826 1.00116 1.21001 0.97921 1.00870 0.91841 1.20501 0.96351 0.97886 0.94876 1.20570 1.00167 1.00463 0.91871 1.21055 0.97035 0.96906 0.98454 1.21094 0.96343 0.99325 0.97433 1.20724 0.99591 0.98007 0.91775 1.20883 0.96959 0.97443 0.95727 0.92372 0.95407 0.95849 0.92355 0.92331 0.83622 0.84728 0.82617 0.74409 0.76804 0.90060 0.89471 0.90270 0.89759 0.86317 0.85972 0.85968 0.86126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.43 13.96 55.43 0.77 -25.66 16 2 C 0.07 2.01 5.47 -17.81 -0.10 1.92 16 3 Si 0.88 20.65 27.47 -169.99 -4.67 15.98 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 6 H -0.26 -5.90 6.54 56.52 0.37 -5.53 16 7 C -0.53 -14.22 9.66 -34.44 -0.33 -14.55 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C -0.01 -0.16 4.41 -27.88 -0.12 -0.29 16 10 C 0.07 1.38 4.70 37.16 0.17 1.56 16 11 O -0.32 -5.54 9.39 -19.69 -0.18 -5.72 16 12 C 0.06 1.01 6.72 -38.92 -0.26 0.75 16 13 C -0.14 -2.04 9.14 -39.17 -0.36 -2.40 16 14 C -0.16 -1.98 10.10 -39.44 -0.40 -2.38 16 15 C 0.08 1.04 11.17 -17.55 -0.20 0.85 16 16 N -0.44 -7.22 7.87 -12.22 -0.10 -7.32 16 17 C 0.35 5.58 7.45 -154.43 -1.15 4.43 16 18 N -0.66 -9.30 5.40 -15.67 -0.08 -9.38 16 19 C 0.70 9.76 8.23 -86.92 -0.72 9.04 16 20 O -0.53 -9.23 14.01 5.29 0.07 -9.16 16 21 N -0.74 -7.58 5.09 -58.79 -0.30 -7.88 16 22 C 0.20 1.97 3.21 -68.05 -0.22 1.75 16 23 H 0.11 1.19 7.56 -51.93 -0.39 0.79 16 24 C -0.13 -0.80 6.76 -25.32 -0.17 -0.97 16 25 C -0.08 -0.50 6.77 -26.85 -0.18 -0.68 16 26 C -0.10 -0.86 6.14 -104.21 -0.64 -1.50 16 27 C -0.11 -0.96 10.04 -39.53 -0.40 -1.36 16 28 C -0.12 -1.03 10.05 -39.62 -0.40 -1.42 16 29 C -0.12 -1.26 10.05 -39.63 -0.40 -1.66 16 30 C -0.08 -0.98 10.00 -39.53 -0.40 -1.38 16 31 C -0.11 -1.16 5.79 -104.21 -0.60 -1.77 16 32 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.03 0.63 7.20 -51.93 -0.37 0.25 16 34 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 35 H 0.06 1.06 7.70 -51.93 -0.40 0.66 16 36 H 0.06 1.06 7.70 -51.93 -0.40 0.66 16 37 H 0.15 1.93 6.44 -52.48 -0.34 1.59 16 38 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 40 H 0.42 5.09 8.06 -40.82 -0.33 4.76 16 41 H 0.40 3.13 8.43 -40.82 -0.34 2.79 16 42 H 0.08 0.45 7.82 -51.93 -0.41 0.05 16 43 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 47 H 0.12 0.80 8.06 -52.48 -0.42 0.37 16 48 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 49 H 0.12 1.65 7.51 -52.49 -0.39 1.26 16 LS Contribution 406.78 15.07 6.13 6.13 Total: -1.00 -33.80 406.78 -11.96 -45.76 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -6.74 Total: 7.33 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -6.86 Total: -10.08 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: 0.29 Total: -50.24 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.11 Total: -14.88 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.67 Total: 15.98 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.80 -11.96 -45.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097164552.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.807 kcal (2) G-P(sol) polarization free energy of solvation -33.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds