Wall clock time and date at job start Tue Mar 31 2020 06:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 120.00225 * 2 1 4 4 H 1.48499 * 109.46762 * 270.00117 * 3 2 1 5 5 H 1.48503 * 109.46998 * 29.99482 * 3 2 1 6 6 H 1.48491 * 109.47310 * 150.00018 * 3 2 1 7 7 C 1.37881 * 119.99546 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00280 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99490 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.46772 * 180.02562 * 9 7 2 11 11 O 1.42901 * 109.46995 * 180.02562 * 10 9 7 12 12 C 1.35985 * 116.99944 * 179.97438 * 11 10 9 13 13 C 1.38781 * 120.49818 * 0.02562 * 12 11 10 14 14 C 1.38795 * 118.45157 * 179.97438 * 13 12 11 15 15 C 1.38069 * 119.35504 * 359.97438 * 14 13 12 16 16 N 1.31981 * 120.94961 * 359.72342 * 15 14 13 17 17 C 1.32267 * 121.68503 * 0.56668 * 16 15 14 18 18 N 1.39590 * 119.71938 * 179.71180 * 17 16 15 19 19 C 1.34774 * 120.00326 * 359.72597 * 18 17 16 20 20 O 1.21581 * 119.99643 * 359.97438 * 19 18 17 21 21 N 1.34773 * 119.99940 * 180.02562 * 19 18 17 22 22 C 1.46506 * 119.99969 * 180.02562 * 21 19 18 23 23 H 1.09005 * 110.26411 * 326.79770 * 22 21 19 24 24 C 1.54341 * 110.30302 * 204.72436 * 22 21 19 25 25 C 1.54348 * 102.38995 * 214.72343 * 24 22 21 26 26 C 1.51370 * 105.17021 * 26.34592 * 25 24 22 27 27 C 1.38495 * 130.39471 * 162.79030 * 26 25 24 28 28 C 1.38110 * 120.21671 * 180.02562 * 27 26 25 29 29 C 1.38250 * 119.93454 * 0.02562 * 28 27 26 30 30 C 1.38103 * 119.93527 * 359.97438 * 29 28 27 31 31 C 1.38213 * 109.75707 * 342.81582 * 26 25 24 32 32 H 0.97002 * 119.99457 * 0.02562 * 1 2 3 33 33 H 1.08993 * 109.47271 * 60.00515 * 9 7 2 34 34 H 1.08997 * 109.47008 * 299.99747 * 9 7 2 35 35 H 1.08998 * 109.47600 * 59.99805 * 10 9 7 36 36 H 1.09002 * 109.47189 * 299.99623 * 10 9 7 37 37 H 1.08007 * 120.77812 * 359.94591 * 13 12 11 38 38 H 1.08000 * 120.32039 * 179.97438 * 14 13 12 39 39 H 1.07996 * 119.52354 * 179.97438 * 15 14 13 40 40 H 0.97004 * 119.99633 * 179.73111 * 18 17 16 41 41 H 0.97005 * 120.00161 * 359.72198 * 21 19 18 42 42 H 1.08999 * 110.82256 * 332.94600 * 24 22 21 43 43 H 1.08996 * 110.82747 * 96.29944 * 24 22 21 44 44 H 1.09001 * 110.30390 * 145.26325 * 25 24 22 45 45 H 1.08990 * 110.30547 * 267.32457 * 25 24 22 46 46 H 1.08001 * 119.89795 * 0.03746 * 27 26 25 47 47 H 1.08003 * 120.03159 * 179.97438 * 28 27 26 48 48 H 1.08002 * 120.03362 * 179.97438 * 29 28 27 49 49 H 1.07998 * 119.89498 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6367 0.0010 11 8 5.4505 -2.6367 0.0021 12 6 6.0678 -3.8484 0.0027 13 6 5.3220 -5.0188 0.0017 14 6 5.9959 -6.2322 0.0018 15 6 7.3765 -6.2397 0.0024 16 7 8.0614 -5.1115 -0.0026 17 6 7.4599 -3.9335 0.0028 18 7 8.2248 -2.7659 0.0033 19 6 9.5704 -2.8417 0.0039 20 8 10.1180 -3.9271 0.0044 21 7 10.3088 -1.7142 0.0048 22 6 11.7716 -1.7966 0.0049 23 1 12.1003 -2.6726 0.5642 24 6 12.3801 -0.5145 0.6114 25 6 13.6693 -0.3353 -0.2182 26 6 13.3851 -1.0108 -1.5427 27 6 14.0294 -0.8993 -2.7636 28 6 13.5858 -1.6240 -3.8523 29 6 12.4948 -2.4634 -3.7242 30 6 11.8510 -2.5760 -2.5076 31 6 12.2947 -1.8504 -1.4144 32 1 -0.4849 0.8401 -0.0004 33 1 3.8745 -0.6802 0.8911 34 1 3.8752 -0.6805 -0.8888 35 1 3.6585 -3.1503 -0.8892 36 1 3.6578 -3.1507 0.8908 37 1 4.2425 -4.9862 0.0013 38 1 5.4455 -7.1614 0.0014 39 1 7.9036 -7.1823 0.0029 40 1 7.7878 -1.8998 0.0033 41 1 9.8718 -0.8482 0.0011 42 1 11.7103 0.3345 0.4748 43 1 12.6117 -0.6572 1.6669 44 1 13.8767 0.7239 -0.3708 45 1 14.5102 -0.8167 0.2808 46 1 14.8816 -0.2436 -2.8646 47 1 14.0902 -1.5345 -4.8031 48 1 12.1463 -3.0306 -4.5746 49 1 10.9985 -3.2316 -2.4083 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097164552.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:17 Heat of formation + Delta-G solvation = -11.958177 kcal Electronic energy + Delta-G solvation = -31893.744405 eV Core-core repulsion = 27592.549755 eV Total energy + Delta-G solvation = -4301.194649 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.168 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.16346 -41.39005 -40.28760 -39.13479 -37.14553 -35.91927 -35.39244 -34.59468 -33.06338 -32.50323 -31.82445 -30.40282 -29.83042 -27.54797 -27.30516 -24.89563 -23.98782 -23.65844 -22.72627 -22.06615 -21.83333 -21.52258 -19.92672 -19.44369 -18.96563 -18.26382 -17.58156 -17.23940 -17.21804 -16.99251 -16.37568 -16.29210 -16.06474 -15.94248 -15.74846 -15.39362 -15.21474 -14.97539 -14.77246 -14.64997 -14.17331 -14.11258 -13.90271 -13.74235 -13.62303 -13.34108 -12.86352 -12.77440 -12.71376 -12.65581 -12.33231 -12.19644 -11.91975 -11.87402 -11.82713 -11.78430 -11.64940 -11.57729 -11.45704 -10.80606 -10.44941 -10.26982 -10.15310 -9.75970 -9.50758 -8.84447 -8.33588 -6.40402 0.13667 0.28546 0.35990 0.44132 1.37578 1.39053 1.42213 1.50744 2.07643 2.09351 2.34049 2.78352 2.90195 2.97454 3.01951 3.38340 3.56382 3.62501 3.84449 3.94238 4.05797 4.10723 4.12553 4.14042 4.20488 4.23940 4.29712 4.31140 4.45162 4.57977 4.64867 4.67030 4.74739 4.88345 4.94119 4.98376 5.05740 5.12684 5.14096 5.15817 5.19747 5.27029 5.32254 5.41850 5.47963 5.55223 5.56867 5.59275 5.69376 5.79637 6.07980 6.16618 6.28837 6.66175 6.70139 7.15018 7.24768 7.52273 8.81958 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.008875 B = 0.002286 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3154.271826 B =12246.927584 C =14226.388259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.011 3.989 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.244 1.244 7 C -0.536 4.536 8 H 0.042 0.958 9 C -0.005 4.005 10 C 0.086 3.914 11 O -0.324 6.324 12 C 0.041 3.959 13 C -0.147 4.147 14 C -0.149 4.149 15 C 0.076 3.924 16 N -0.472 5.472 17 C 0.333 3.667 18 N -0.660 5.660 19 C 0.694 3.306 20 O -0.570 6.570 21 N -0.723 5.723 22 C 0.200 3.800 23 H 0.084 0.916 24 C -0.116 4.116 25 C -0.074 4.074 26 C -0.097 4.097 27 C -0.115 4.115 28 C -0.118 4.118 29 C -0.138 4.138 30 C -0.109 4.109 31 C -0.128 4.128 32 H 0.269 0.731 33 H 0.031 0.969 34 H 0.028 0.972 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.154 0.846 38 H 0.173 0.827 39 H 0.184 0.816 40 H 0.425 0.575 41 H 0.410 0.590 42 H 0.093 0.907 43 H 0.102 0.898 44 H 0.100 0.900 45 H 0.097 0.903 46 H 0.147 0.853 47 H 0.147 0.853 48 H 0.129 0.871 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.655 -2.473 -1.798 29.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.187 4.187 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.168 1.168 7 C -0.573 4.573 8 H 0.060 0.940 9 C -0.042 4.042 10 C 0.012 3.988 11 O -0.238 6.238 12 C -0.010 4.010 13 C -0.174 4.174 14 C -0.170 4.170 15 C -0.081 4.081 16 N -0.187 5.187 17 C 0.099 3.901 18 N -0.310 5.310 19 C 0.394 3.606 20 O -0.444 6.444 21 N -0.379 5.379 22 C 0.095 3.905 23 H 0.102 0.898 24 C -0.153 4.153 25 C -0.111 4.111 26 C -0.098 4.098 27 C -0.133 4.133 28 C -0.135 4.135 29 C -0.156 4.156 30 C -0.128 4.128 31 C -0.130 4.130 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.172 0.828 38 H 0.190 0.810 39 H 0.201 0.799 40 H 0.264 0.736 41 H 0.247 0.753 42 H 0.112 0.888 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.115 0.885 46 H 0.165 0.835 47 H 0.165 0.835 48 H 0.147 0.853 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 31.055 -3.115 -1.774 31.261 hybrid contribution -2.200 0.942 -0.269 2.408 sum 28.855 -2.173 -2.044 29.009 Atomic orbital electron populations 1.70038 1.08205 1.28436 1.51658 1.25905 0.95602 1.03405 0.93765 0.85677 0.79626 0.78223 0.79290 1.19159 1.20958 1.16760 1.21121 0.90656 0.93814 1.51752 0.93955 1.19431 0.94174 0.92595 0.98036 1.22752 0.75179 0.99838 1.01054 1.85967 1.23230 1.25850 1.88734 1.19597 0.90954 0.86987 1.03441 1.21876 1.01691 0.91585 1.02255 1.22252 0.95176 0.98971 1.00564 1.23023 0.91959 0.95808 0.97300 1.67693 1.39406 0.97040 1.14552 1.17649 0.84331 0.87177 1.00908 1.42500 1.05040 1.07965 1.75529 1.16143 0.80974 0.85295 0.78183 1.90996 1.70713 1.27395 1.55324 1.45160 1.06429 1.07133 1.79196 1.20484 0.77361 1.00813 0.91814 0.89764 1.22643 0.96775 0.95135 1.00789 1.21077 0.98019 1.01928 0.90115 1.20887 0.95358 0.97206 0.96325 1.20966 1.00607 1.00276 0.91404 1.21383 0.96291 0.96027 0.99840 1.21263 0.97108 1.00163 0.97062 1.20661 0.99720 0.98927 0.93463 1.21044 0.98123 0.98094 0.95725 0.92217 0.95077 0.95318 0.92080 0.91996 0.82841 0.80966 0.79924 0.73644 0.75292 0.88802 0.87925 0.88141 0.88508 0.83506 0.83489 0.85348 0.89270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.85 13.96 21.45 0.30 -56.55 16 2 C 0.01 0.63 5.47 84.65 0.46 1.09 16 3 Si 0.95 42.09 27.47 68.60 1.88 43.97 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.24 -9.98 6.54 99.48 0.65 -9.33 16 7 C -0.54 -29.16 9.66 25.60 0.25 -28.92 16 8 H 0.04 2.50 7.99 -2.91 -0.02 2.48 16 9 C 0.00 -0.21 4.41 29.85 0.13 -0.08 16 10 C 0.09 3.20 4.70 71.98 0.34 3.53 16 11 O -0.32 -11.06 9.39 -93.38 -0.88 -11.94 16 12 C 0.04 1.31 6.72 22.70 0.15 1.46 16 13 C -0.15 -4.01 9.14 22.53 0.21 -3.81 16 14 C -0.15 -3.32 10.10 22.36 0.23 -3.10 16 15 C 0.08 1.93 11.17 84.63 0.95 2.88 16 16 N -0.47 -15.58 7.87 -192.58 -1.52 -17.09 16 17 C 0.33 10.81 7.45 132.98 0.99 11.80 16 18 N -0.66 -18.99 5.40 -321.77 -1.74 -20.72 16 19 C 0.69 20.20 8.23 179.06 1.47 21.67 16 20 O -0.57 -20.84 14.01 -3.97 -0.06 -20.89 16 21 N -0.72 -15.00 5.09 -458.19 -2.33 -17.34 16 22 C 0.20 3.84 3.21 44.91 0.14 3.98 16 23 H 0.08 1.98 7.56 -2.38 -0.02 1.96 16 24 C -0.12 -1.22 6.76 31.51 0.21 -1.00 16 25 C -0.07 -0.72 6.77 30.52 0.21 -0.51 16 26 C -0.10 -1.59 6.14 -19.60 -0.12 -1.71 16 27 C -0.11 -1.69 10.04 22.30 0.22 -1.47 16 28 C -0.12 -1.90 10.05 22.24 0.22 -1.68 16 29 C -0.14 -2.87 10.05 22.24 0.22 -2.65 16 30 C -0.11 -2.76 10.00 22.30 0.22 -2.54 16 31 C -0.13 -2.77 5.79 -19.60 -0.11 -2.88 16 32 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 33 H 0.03 1.36 7.20 -2.39 -0.02 1.34 16 34 H 0.03 1.24 7.57 -2.39 -0.02 1.22 16 35 H 0.06 2.20 7.70 -2.39 -0.02 2.19 16 36 H 0.06 2.23 7.70 -2.39 -0.02 2.21 16 37 H 0.15 3.88 6.44 -2.91 -0.02 3.86 16 38 H 0.17 2.51 8.06 -2.91 -0.02 2.48 16 39 H 0.18 3.48 8.06 -2.91 -0.02 3.46 16 40 H 0.43 10.46 8.06 -92.71 -0.75 9.71 16 41 H 0.41 6.23 8.43 -92.70 -0.78 5.45 16 42 H 0.09 0.78 7.82 -2.39 -0.02 0.76 16 43 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 47 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 48 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 49 H 0.09 2.74 7.51 -2.91 -0.02 2.72 16 Total: -1.00 -76.36 406.78 1.48 -74.88 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: -0.58 Total: 29.62 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: 6.40 Total: -3.93 kcal Atomic # 7 Polarization: -106.42 SS G_CDS: -5.29 Total: -111.71 kcal Atomic # 8 Polarization: -31.90 SS G_CDS: -0.93 Total: -32.83 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 1.88 Total: 43.97 kcal Total: -76.36 1.48 -74.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097164552.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.919 kcal (2) G-P(sol) polarization free energy of solvation -76.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds