Wall clock time and date at job start Tue Mar 31 2020 06:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47395 * 180.02562 * 9 7 2 11 11 N 1.40061 * 125.87321 * 90.02090 * 10 9 7 12 12 C 1.30248 * 109.69917 * 179.97438 * 11 10 9 13 13 C 1.41169 * 108.46837 * 359.97438 * 12 11 10 14 14 C 1.36310 * 125.87711 * 269.72070 * 10 9 7 15 15 N 1.33198 * 134.61438 * 0.03070 * 14 10 9 16 16 C 1.31503 * 120.68563 * 180.02562 * 15 14 10 17 17 N 1.32128 * 122.64788 * 359.97438 * 16 15 14 18 18 C 1.32859 * 121.18693 * 359.63221 * 17 16 15 19 19 N 1.38113 * 120.81299 * 179.91184 * 18 17 16 20 20 C 1.48563 * 111.00008 * 116.08399 * 19 18 17 21 21 C 1.54382 * 104.59537 * 200.96364 * 20 19 18 22 22 C 1.54266 * 105.05957 * 23.85783 * 21 20 19 23 23 C 1.48566 * 110.99376 * 0.67076 * 19 18 17 24 24 H 1.09004 * 110.41421 * 40.26574 * 23 19 18 25 25 C 1.50698 * 110.41077 * 277.81569 * 23 19 18 26 26 C 1.38241 * 119.97582 * 319.73055 * 25 23 19 27 27 C 1.38201 * 120.02125 * 179.72763 * 26 25 23 28 28 C 1.38453 * 119.97658 * 0.52401 * 27 26 25 29 29 F 1.35097 * 120.02480 * 179.72716 * 28 27 26 30 30 C 1.38456 * 119.94925 * 359.74632 * 28 27 26 31 31 C 1.38204 * 119.97417 * 0.02562 * 30 28 27 32 32 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46894 * 300.00433 * 9 7 2 34 34 H 1.08998 * 109.47107 * 60.00164 * 9 7 2 35 35 H 1.07999 * 125.77039 * 180.02562 * 12 11 10 36 36 H 1.08002 * 118.67849 * 179.97438 * 16 15 14 37 37 H 1.08995 * 110.41440 * 319.74962 * 20 19 18 38 38 H 1.09001 * 110.40470 * 82.18985 * 20 19 18 39 39 H 1.09005 * 110.32043 * 264.96319 * 21 20 19 40 40 H 1.08997 * 110.32370 * 142.75206 * 21 20 19 41 41 H 1.09001 * 110.31924 * 241.10411 * 22 21 20 42 42 H 1.08998 * 110.40906 * 118.93756 * 22 21 20 43 43 H 1.07998 * 119.98731 * 359.97438 * 26 25 23 44 44 H 1.08004 * 120.00672 * 180.25152 * 27 26 25 45 45 H 1.08001 * 120.01585 * 179.97438 * 30 28 27 46 46 H 1.07999 * 119.98541 * 179.97438 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 7 2.7361 -4.2367 1.1344 12 6 3.5487 -5.1878 0.7716 13 6 3.5850 -5.2311 -0.6390 14 6 2.7181 -4.2233 -1.1050 15 7 2.5706 -4.0599 -2.4187 16 6 3.2197 -4.8265 -3.2674 17 7 4.0410 -5.7854 -2.8776 18 6 4.2606 -6.0214 -1.5887 19 7 5.1193 -7.0269 -1.1898 20 6 6.2915 -6.4702 -0.4666 21 6 7.3700 -7.5701 -0.5687 22 6 6.9875 -8.3918 -1.8170 23 6 5.7101 -7.7192 -2.3641 24 1 5.9632 -6.9992 -3.1423 25 6 4.7564 -8.7573 -2.8967 26 6 4.0301 -9.5422 -2.0207 27 6 3.1510 -10.4907 -2.5082 28 6 3.0060 -10.6621 -3.8744 29 9 2.1510 -11.5927 -4.3519 30 6 3.7381 -9.8792 -4.7508 31 6 4.6131 -8.9281 -4.2611 32 1 -0.4850 -0.8401 0.0004 33 1 0.6247 -2.5570 0.8897 34 1 0.6242 -2.5567 -0.8903 35 1 4.1007 -5.8347 1.4373 36 1 3.0757 -4.6660 -4.3256 37 1 6.6355 -5.5547 -0.9478 38 1 6.0394 -6.2806 0.5768 39 1 7.3523 -8.2012 0.3200 40 1 8.3557 -7.1231 -0.6971 41 1 6.7822 -9.4261 -1.5410 42 1 7.7850 -8.3496 -2.5588 43 1 4.1467 -9.4114 -0.9550 44 1 2.5807 -11.1010 -1.8235 45 1 3.6261 -10.0123 -5.8167 46 1 5.1846 -8.3176 -4.9446 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097199911.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:04 Heat of formation + Delta-G solvation = 109.025799 kcal Electronic energy + Delta-G solvation = -32678.068898 eV Core-core repulsion = 28290.952954 eV Total energy + Delta-G solvation = -4387.115944 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.150 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.02510 -41.80839 -40.27821 -38.67547 -37.95566 -34.40339 -33.67248 -32.03815 -31.60085 -31.27152 -31.20791 -29.26301 -27.84201 -26.87458 -24.31236 -23.81633 -23.33559 -22.98422 -22.45797 -21.51951 -20.66545 -20.06967 -17.98865 -17.90328 -17.57514 -16.96331 -16.79584 -16.43506 -16.12259 -15.71753 -15.36396 -14.93000 -14.73804 -14.48653 -14.16089 -13.98292 -13.84341 -13.76828 -13.63674 -13.57554 -13.20624 -13.03989 -12.87547 -12.64576 -12.28450 -12.00509 -11.85733 -11.67146 -11.45484 -11.24119 -11.19445 -11.15691 -10.89259 -10.83216 -10.74835 -10.32482 -10.23653 -9.54405 -9.27120 -9.22685 -8.94404 -8.67042 -8.59448 -8.48217 -7.96071 -6.61700 -4.36607 0.88089 0.99042 1.11153 1.63526 2.76631 2.84702 3.24897 3.34343 3.37799 3.48271 3.52282 4.05831 4.11936 4.16173 4.29285 4.37166 4.40584 4.52597 4.58247 4.64238 4.73362 4.77515 4.92363 4.99698 5.03227 5.12365 5.13694 5.18998 5.24583 5.34409 5.43778 5.49231 5.53345 5.56930 5.68191 5.75605 5.80528 5.86562 5.97864 6.06565 6.11660 6.21632 6.37456 6.51295 6.60622 6.74462 6.82396 6.95334 7.13404 7.53834 7.63340 7.98587 8.20425 8.51466 8.55487 9.31579 10.76103 Molecular weight = 367.15amu Principal moments of inertia in cm(-1) A = 0.013283 B = 0.002566 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.529609 B =10907.420998 C =11824.069537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.027 3.973 3 Si 1.082 2.918 4 H -0.289 1.289 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.613 4.613 8 H 0.057 0.943 9 C 0.254 3.746 10 N -0.330 5.330 11 N -0.235 5.235 12 C 0.074 3.926 13 C -0.289 4.289 14 C 0.350 3.650 15 N -0.532 5.532 16 C 0.348 3.652 17 N -0.587 5.587 18 C 0.423 3.577 19 N -0.448 5.448 20 C 0.044 3.956 21 C -0.123 4.123 22 C -0.120 4.120 23 C 0.112 3.888 24 H 0.093 0.907 25 C -0.069 4.069 26 C -0.067 4.067 27 C -0.159 4.159 28 C 0.092 3.908 29 F -0.145 7.145 30 C -0.157 4.157 31 C -0.070 4.070 32 H 0.269 0.731 33 H 0.045 0.955 34 H 0.049 0.951 35 H 0.189 0.811 36 H 0.196 0.804 37 H 0.059 0.941 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.136 0.864 44 H 0.131 0.869 45 H 0.132 0.868 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.080 -21.173 -5.692 26.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.178 4.178 3 Si 0.909 3.091 4 H -0.215 1.215 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.652 4.652 8 H 0.075 0.925 9 C 0.136 3.864 10 N -0.116 5.116 11 N -0.050 5.050 12 C -0.121 4.121 13 C -0.305 4.305 14 C 0.102 3.898 15 N -0.253 5.253 16 C 0.054 3.946 17 N -0.311 5.311 18 C 0.173 3.827 19 N -0.166 5.166 20 C -0.082 4.082 21 C -0.161 4.161 22 C -0.158 4.158 23 C 0.005 3.995 24 H 0.110 0.890 25 C -0.070 4.070 26 C -0.086 4.086 27 C -0.178 4.178 28 C 0.072 3.928 29 F -0.123 7.123 30 C -0.176 4.176 31 C -0.089 4.089 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.206 0.794 36 H 0.213 0.787 37 H 0.077 0.923 38 H 0.114 0.886 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.154 0.846 44 H 0.149 0.851 45 H 0.150 0.850 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 13.657 -18.900 -5.209 23.893 hybrid contribution 0.521 -1.809 -0.400 1.925 sum 14.177 -20.709 -5.610 25.717 Atomic orbital electron populations 1.70769 1.06742 1.30624 1.45478 1.25897 0.96315 1.02637 0.92970 0.83353 0.74313 0.74125 0.77293 1.21506 1.20909 1.20893 1.22139 0.94921 0.90648 1.57462 0.92515 1.19838 0.86376 0.81355 0.98785 1.49204 1.35978 1.27537 0.98886 1.76982 1.11124 1.07783 1.09114 1.23549 0.98766 0.97322 0.92486 1.19663 1.09620 1.05634 0.95569 1.19019 0.91789 0.90530 0.88506 1.67514 1.27767 1.29857 1.00172 1.24518 0.86077 0.84684 0.99303 1.68320 1.23941 1.23161 1.15702 1.19504 0.90131 0.85414 0.87629 1.62107 1.14156 1.19983 1.20335 1.23212 0.87882 0.97087 1.00011 1.22346 0.98052 0.96838 0.98854 1.22450 0.95910 1.00131 0.97321 1.21513 0.91825 0.94045 0.92073 0.88957 1.19517 0.98020 0.96376 0.93064 1.20894 0.93966 0.93040 1.00675 1.21141 1.01690 1.01421 0.93518 1.17756 0.92149 0.90267 0.92580 1.91483 1.68381 1.63507 1.88952 1.21071 0.98757 0.97842 0.99927 1.20822 0.96948 0.96312 0.94824 0.92074 0.93728 0.93346 0.79433 0.78722 0.92290 0.88616 0.90242 0.90473 0.90375 0.90460 0.84576 0.85065 0.84962 0.85026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.62 13.65 55.43 0.76 -25.86 16 2 C 0.03 0.77 5.46 -17.82 -0.10 0.67 16 3 Si 1.08 25.17 29.90 -169.99 -5.08 20.09 16 4 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.61 -17.47 9.39 -34.44 -0.32 -17.79 16 8 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.25 6.67 5.51 -5.19 -0.03 6.64 16 10 N -0.33 -7.80 3.63 -61.64 -0.22 -8.03 16 11 N -0.23 -4.95 12.45 30.80 0.38 -4.57 16 12 C 0.07 1.24 11.41 -17.11 -0.20 1.05 16 13 C -0.29 -5.13 5.82 -106.82 -0.62 -5.75 16 14 C 0.35 7.58 8.04 -156.23 -1.26 6.33 16 15 N -0.53 -10.96 10.47 -13.97 -0.15 -11.11 16 16 C 0.35 5.63 12.24 -92.12 -1.13 4.50 16 17 N -0.59 -8.74 8.34 -13.62 -0.11 -8.86 16 18 C 0.42 6.28 6.02 -154.85 -0.93 5.34 16 19 N -0.45 -4.95 4.41 -162.26 -0.72 -5.66 16 20 C 0.04 0.39 5.93 -2.18 -0.01 0.38 16 21 C -0.12 -0.76 7.00 -25.34 -0.18 -0.93 16 22 C -0.12 -0.79 6.52 -25.34 -0.17 -0.96 16 23 C 0.11 1.05 2.03 -67.22 -0.14 0.92 16 24 H 0.09 0.95 7.08 -51.93 -0.37 0.58 16 25 C -0.07 -0.69 4.46 -104.62 -0.47 -1.16 16 26 C -0.07 -0.69 9.14 -39.59 -0.36 -1.05 16 27 C -0.16 -1.66 10.03 -39.52 -0.40 -2.05 16 28 C 0.09 1.01 7.30 -39.42 -0.29 0.72 16 29 F -0.14 -1.71 17.27 2.25 0.04 -1.67 16 30 C -0.16 -1.54 10.03 -39.51 -0.40 -1.93 16 31 C -0.07 -0.66 9.68 -39.59 -0.38 -1.05 16 32 H 0.27 7.85 7.22 -40.82 -0.29 7.55 16 33 H 0.04 1.20 8.01 -51.93 -0.42 0.78 16 34 H 0.05 1.32 8.01 -51.93 -0.42 0.90 16 35 H 0.19 2.24 7.35 -52.49 -0.39 1.86 16 36 H 0.20 2.39 8.06 -52.49 -0.42 1.97 16 37 H 0.06 0.60 7.97 -51.93 -0.41 0.18 16 38 H 0.10 0.79 6.98 -51.93 -0.36 0.43 16 39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.50 7.70 -51.93 -0.40 0.10 16 42 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.14 1.32 7.76 -52.49 -0.41 0.92 16 44 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 45 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 46 H 0.13 1.01 8.04 -52.49 -0.42 0.59 16 LS Contribution 389.97 15.07 5.88 5.88 Total: -1.00 -33.30 389.97 -12.22 -45.52 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -5.63 Total: 0.39 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -7.37 Total: -6.12 kcal Atomic # 7 Polarization: -64.03 SS G_CDS: -0.06 Total: -64.09 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -5.08 Total: 20.09 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.30 -12.22 -45.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199911.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.546 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds