Wall clock time and date at job start Tue Mar 31 2020 06:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47395 * 180.02562 * 9 7 2 11 11 N 1.40061 * 125.87321 * 90.02090 * 10 9 7 12 12 C 1.30248 * 109.69917 * 179.97438 * 11 10 9 13 13 C 1.41169 * 108.46837 * 359.97438 * 12 11 10 14 14 C 1.36310 * 125.87711 * 269.72070 * 10 9 7 15 15 N 1.33198 * 134.61438 * 0.03070 * 14 10 9 16 16 C 1.31503 * 120.68563 * 180.02562 * 15 14 10 17 17 N 1.32128 * 122.64788 * 359.97438 * 16 15 14 18 18 C 1.32859 * 121.18693 * 359.63221 * 17 16 15 19 19 N 1.38113 * 120.81299 * 179.91184 * 18 17 16 20 20 C 1.48563 * 111.00008 * 116.08399 * 19 18 17 21 21 C 1.54382 * 104.59537 * 200.96364 * 20 19 18 22 22 C 1.54266 * 105.05957 * 23.85783 * 21 20 19 23 23 C 1.48566 * 110.99376 * 0.67076 * 19 18 17 24 24 H 1.09004 * 110.41421 * 40.26574 * 23 19 18 25 25 C 1.50698 * 110.41077 * 277.81569 * 23 19 18 26 26 C 1.38241 * 119.97582 * 319.73055 * 25 23 19 27 27 C 1.38201 * 120.02125 * 179.72763 * 26 25 23 28 28 C 1.38453 * 119.97658 * 0.52401 * 27 26 25 29 29 F 1.35097 * 120.02480 * 179.72716 * 28 27 26 30 30 C 1.38456 * 119.94925 * 359.74632 * 28 27 26 31 31 C 1.38204 * 119.97417 * 0.02562 * 30 28 27 32 32 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46894 * 300.00433 * 9 7 2 34 34 H 1.08998 * 109.47107 * 60.00164 * 9 7 2 35 35 H 1.07999 * 125.77039 * 180.02562 * 12 11 10 36 36 H 1.08002 * 118.67849 * 179.97438 * 16 15 14 37 37 H 1.08995 * 110.41440 * 319.74962 * 20 19 18 38 38 H 1.09001 * 110.40470 * 82.18985 * 20 19 18 39 39 H 1.09005 * 110.32043 * 264.96319 * 21 20 19 40 40 H 1.08997 * 110.32370 * 142.75206 * 21 20 19 41 41 H 1.09001 * 110.31924 * 241.10411 * 22 21 20 42 42 H 1.08998 * 110.40906 * 118.93756 * 22 21 20 43 43 H 1.07998 * 119.98731 * 359.97438 * 26 25 23 44 44 H 1.08004 * 120.00672 * 180.25152 * 27 26 25 45 45 H 1.08001 * 120.01585 * 179.97438 * 30 28 27 46 46 H 1.07999 * 119.98541 * 179.97438 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 7 2.7361 -4.2367 1.1344 12 6 3.5487 -5.1878 0.7716 13 6 3.5850 -5.2311 -0.6390 14 6 2.7181 -4.2233 -1.1050 15 7 2.5706 -4.0599 -2.4187 16 6 3.2197 -4.8265 -3.2674 17 7 4.0410 -5.7854 -2.8776 18 6 4.2606 -6.0214 -1.5887 19 7 5.1193 -7.0269 -1.1898 20 6 6.2915 -6.4702 -0.4666 21 6 7.3700 -7.5701 -0.5687 22 6 6.9875 -8.3918 -1.8170 23 6 5.7101 -7.7192 -2.3641 24 1 5.9632 -6.9992 -3.1423 25 6 4.7564 -8.7573 -2.8967 26 6 4.0301 -9.5422 -2.0207 27 6 3.1510 -10.4907 -2.5082 28 6 3.0060 -10.6621 -3.8744 29 9 2.1510 -11.5927 -4.3519 30 6 3.7381 -9.8792 -4.7508 31 6 4.6131 -8.9281 -4.2611 32 1 -0.4850 -0.8401 0.0004 33 1 0.6247 -2.5570 0.8897 34 1 0.6242 -2.5567 -0.8903 35 1 4.1007 -5.8347 1.4373 36 1 3.0757 -4.6660 -4.3256 37 1 6.6355 -5.5547 -0.9478 38 1 6.0394 -6.2806 0.5768 39 1 7.3523 -8.2012 0.3200 40 1 8.3557 -7.1231 -0.6971 41 1 6.7822 -9.4261 -1.5410 42 1 7.7850 -8.3496 -2.5588 43 1 4.1467 -9.4114 -0.9550 44 1 2.5807 -11.1010 -1.8235 45 1 3.6261 -10.0123 -5.8167 46 1 5.1846 -8.3176 -4.9446 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097199911.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:03 Heat of formation + Delta-G solvation = 91.614313 kcal Electronic energy + Delta-G solvation = -32678.823917 eV Core-core repulsion = 28290.952954 eV Total energy + Delta-G solvation = -4387.870963 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.150 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.88434 -43.15446 -41.23421 -39.80133 -38.94329 -36.23886 -35.04148 -33.29164 -32.90705 -32.30228 -32.02201 -30.47648 -28.91608 -28.42398 -25.60508 -25.47823 -24.51117 -24.01362 -23.47918 -22.40569 -21.65415 -21.21871 -19.62453 -18.87698 -18.79877 -18.53416 -17.90481 -17.50912 -16.97913 -16.77379 -16.57633 -16.10226 -15.77470 -15.74312 -15.52376 -15.42446 -15.10211 -14.90648 -14.54601 -14.38507 -14.20529 -14.04717 -13.99889 -13.76571 -13.69848 -13.37405 -13.33350 -12.71960 -12.68624 -12.56411 -12.24784 -12.23568 -12.02961 -12.02330 -11.87642 -11.75180 -11.34931 -11.30224 -10.75534 -10.64706 -10.29322 -9.98929 -9.90099 -9.50173 -9.46378 -8.87140 -6.65169 -0.39292 0.18630 0.22588 0.35632 1.18864 1.43931 1.46565 1.54594 1.72447 2.26734 2.42908 2.66745 2.75460 2.92069 3.05034 3.17265 3.33634 3.49415 3.52158 3.71694 3.73149 3.86151 3.89907 4.01156 4.06163 4.18680 4.27981 4.32313 4.44297 4.45143 4.52479 4.57431 4.61057 4.73567 4.87609 4.92192 5.01945 5.04784 5.09869 5.20966 5.22211 5.22886 5.33433 5.35008 5.46142 5.47636 5.55220 5.67448 5.87249 5.93414 5.98335 6.12343 6.27423 6.49237 7.10950 7.17590 8.49056 Molecular weight = 367.15amu Principal moments of inertia in cm(-1) A = 0.013283 B = 0.002566 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.529609 B =10907.420998 C =11824.069537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.018 4.018 3 Si 1.128 2.872 4 H -0.280 1.280 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.623 4.623 8 H 0.040 0.960 9 C 0.272 3.728 10 N -0.365 5.365 11 N -0.280 5.280 12 C 0.107 3.893 13 C -0.299 4.299 14 C 0.324 3.676 15 N -0.582 5.582 16 C 0.358 3.642 17 N -0.578 5.578 18 C 0.440 3.560 19 N -0.443 5.443 20 C 0.037 3.963 21 C -0.113 4.113 22 C -0.113 4.113 23 C 0.111 3.889 24 H 0.088 0.912 25 C -0.075 4.075 26 C -0.075 4.075 27 C -0.167 4.167 28 C 0.070 3.930 29 F -0.154 7.154 30 C -0.158 4.158 31 C -0.072 4.072 32 H 0.258 0.742 33 H 0.027 0.973 34 H 0.027 0.973 35 H 0.239 0.761 36 H 0.231 0.769 37 H 0.048 0.952 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.148 0.852 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.366 -22.522 -6.116 29.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.218 4.218 3 Si 0.947 3.053 4 H -0.205 1.205 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.661 4.661 8 H 0.058 0.942 9 C 0.152 3.848 10 N -0.151 5.151 11 N -0.095 5.095 12 C -0.089 4.089 13 C -0.315 4.315 14 C 0.077 3.923 15 N -0.306 5.306 16 C 0.065 3.935 17 N -0.302 5.302 18 C 0.190 3.810 19 N -0.161 5.161 20 C -0.087 4.087 21 C -0.151 4.151 22 C -0.151 4.151 23 C 0.005 3.995 24 H 0.106 0.894 25 C -0.075 4.075 26 C -0.093 4.093 27 C -0.185 4.185 28 C 0.051 3.949 29 F -0.133 7.133 30 C -0.177 4.177 31 C -0.091 4.091 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.255 0.745 36 H 0.247 0.753 37 H 0.067 0.933 38 H 0.123 0.877 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.102 0.898 42 H 0.113 0.887 43 H 0.159 0.841 44 H 0.157 0.843 45 H 0.166 0.834 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 16.973 -20.313 -5.633 27.064 hybrid contribution -0.383 -1.647 -0.367 1.730 sum 16.591 -21.960 -5.999 28.169 Atomic orbital electron populations 1.70875 1.07508 1.30056 1.46989 1.27416 0.96420 1.06210 0.91708 0.82802 0.73583 0.70554 0.78321 1.20490 1.19339 1.19565 1.22299 0.94152 0.92160 1.57506 0.94196 1.19228 0.86646 0.82190 0.96717 1.48863 1.37403 1.28316 1.00522 1.76934 1.13662 1.10015 1.08868 1.24339 0.96239 0.95447 0.92827 1.19821 1.09764 1.05600 0.96336 1.19431 0.92611 0.91468 0.88777 1.67527 1.30320 1.32340 1.00419 1.25296 0.84415 0.83530 1.00242 1.68506 1.23514 1.22655 1.15548 1.19798 0.89624 0.84680 0.86947 1.62115 1.14685 1.18192 1.21086 1.23409 0.87590 0.97782 0.99946 1.22358 0.97629 0.95865 0.99219 1.22464 0.94715 1.00084 0.97882 1.21643 0.92782 0.93756 0.91337 0.89384 1.19688 0.98037 0.96403 0.93404 1.20989 0.94145 0.93180 1.01024 1.21307 1.01913 1.01709 0.93615 1.18028 0.92821 0.90856 0.93200 1.91457 1.68793 1.63944 1.89071 1.21307 0.98279 0.97406 1.00702 1.21056 0.96795 0.96219 0.94997 0.93210 0.95496 0.95567 0.74538 0.75297 0.93320 0.87717 0.88766 0.88773 0.89844 0.88677 0.84107 0.84296 0.83423 0.83166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.96 13.65 21.45 0.29 -55.67 16 2 C -0.02 -1.03 5.46 84.65 0.46 -0.57 16 3 Si 1.13 50.88 29.90 68.60 2.05 52.93 16 4 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 7 C -0.62 -37.04 9.39 25.60 0.24 -36.80 16 8 H 0.04 2.45 7.81 -2.91 -0.02 2.43 16 9 C 0.27 15.23 5.51 85.63 0.47 15.70 16 10 N -0.36 -18.08 3.63 -348.94 -1.27 -19.35 16 11 N -0.28 -12.10 12.45 -56.46 -0.70 -12.80 16 12 C 0.11 3.46 11.41 85.65 0.98 4.43 16 13 C -0.30 -10.41 5.82 -21.29 -0.12 -10.54 16 14 C 0.32 14.43 8.04 134.15 1.08 15.51 16 15 N -0.58 -24.57 10.47 -198.10 -2.07 -26.65 16 16 C 0.36 11.27 12.24 180.87 2.21 13.48 16 17 N -0.58 -16.16 8.34 -197.01 -1.64 -17.80 16 18 C 0.44 12.22 6.02 133.64 0.80 13.02 16 19 N -0.44 -8.46 4.41 -667.27 -2.94 -11.41 16 20 C 0.04 0.54 5.93 86.45 0.51 1.05 16 21 C -0.11 -0.88 7.00 31.49 0.22 -0.66 16 22 C -0.11 -1.02 6.52 31.49 0.21 -0.81 16 23 C 0.11 1.72 2.03 44.32 0.09 1.81 16 24 H 0.09 1.50 7.08 -2.39 -0.02 1.49 16 25 C -0.07 -1.29 4.46 -19.86 -0.09 -1.38 16 26 C -0.08 -1.39 9.14 22.26 0.20 -1.19 16 27 C -0.17 -3.29 10.03 22.31 0.22 -3.06 16 28 C 0.07 1.47 7.30 22.37 0.16 1.64 16 29 F -0.15 -3.56 17.27 44.97 0.78 -2.79 16 30 C -0.16 -2.81 10.03 22.31 0.22 -2.59 16 31 C -0.07 -1.18 9.68 22.26 0.22 -0.96 16 32 H 0.26 15.88 7.22 -92.71 -0.67 15.21 16 33 H 0.03 1.56 8.01 -2.38 -0.02 1.54 16 34 H 0.03 1.55 8.01 -2.39 -0.02 1.54 16 35 H 0.24 4.86 7.35 -2.91 -0.02 4.83 16 36 H 0.23 5.22 8.06 -2.91 -0.02 5.20 16 37 H 0.05 0.84 7.97 -2.39 -0.02 0.82 16 38 H 0.10 1.33 6.98 -2.39 -0.02 1.31 16 39 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 40 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.08 0.72 7.70 -2.39 -0.02 0.70 16 42 H 0.09 0.58 8.14 -2.39 -0.02 0.57 16 43 H 0.14 2.40 7.76 -2.91 -0.02 2.38 16 44 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 45 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 46 H 0.15 1.83 8.04 -2.91 -0.02 1.80 16 Total: -1.00 -76.91 389.97 3.71 -73.20 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 1.12 Total: 12.24 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: 8.09 Total: 8.09 kcal Atomic # 7 Polarization: -135.34 SS G_CDS: -8.33 Total: -143.67 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.78 Total: -2.79 kcal Atomic # 14 Polarization: 50.88 SS G_CDS: 2.05 Total: 52.93 kcal Total: -76.91 3.71 -73.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199911.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.817 kcal (2) G-P(sol) polarization free energy of solvation -76.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds