Wall clock time and date at job start Tue Mar 31 2020 06:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00124 * 2 1 4 4 H 1.48495 * 109.47356 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47072 * 300.00747 * 3 2 1 6 6 H 1.48505 * 109.47129 * 60.00232 * 3 2 1 7 7 C 1.37873 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99984 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00366 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47477 * 180.02562 * 9 7 2 11 11 N 1.40058 * 125.87135 * 269.99515 * 10 9 7 12 12 C 1.30252 * 109.69690 * 180.02562 * 11 10 9 13 13 C 1.41176 * 108.46428 * 359.76589 * 12 11 10 14 14 C 1.36317 * 125.87224 * 89.99722 * 10 9 7 15 15 N 1.33190 * 134.61888 * 0.02562 * 14 10 9 16 16 C 1.31501 * 120.68706 * 180.02562 * 15 14 10 17 17 N 1.32128 * 122.64176 * 359.97438 * 16 15 14 18 18 C 1.32856 * 121.19642 * 0.02562 * 17 16 15 19 19 N 1.38108 * 120.81641 * 179.97438 * 18 17 16 20 20 C 1.48720 * 111.01744 * 244.49258 * 19 18 17 21 21 C 1.54381 * 104.51692 * 158.96342 * 20 19 18 22 22 C 1.54257 * 105.14978 * 336.27274 * 21 20 19 23 23 C 1.48567 * 110.99805 * 0.02562 * 19 18 17 24 24 H 1.09001 * 110.41003 * 319.74007 * 23 19 18 25 25 C 1.50697 * 110.51060 * 82.12700 * 23 19 18 26 26 C 1.38241 * 119.97467 * 36.41775 * 25 23 19 27 27 C 1.38200 * 120.02505 * 179.72329 * 26 25 23 28 28 C 1.38454 * 119.97593 * 0.56479 * 27 26 25 29 29 F 1.35099 * 120.03015 * 179.68157 * 28 27 26 30 30 C 1.38460 * 119.94682 * 359.70571 * 28 27 26 31 31 C 1.38199 * 119.97557 * 359.97438 * 30 28 27 32 32 H 0.97000 * 120.00085 * 359.97438 * 1 2 3 33 33 H 1.08995 * 109.47028 * 59.99593 * 9 7 2 34 34 H 1.09003 * 109.46567 * 300.00432 * 9 7 2 35 35 H 1.07993 * 125.76887 * 180.02562 * 12 11 10 36 36 H 1.08004 * 118.68151 * 180.02562 * 16 15 14 37 37 H 1.09004 * 110.38960 * 40.24310 * 20 19 18 38 38 H 1.08996 * 110.50963 * 277.74752 * 20 19 18 39 39 H 1.09002 * 110.32526 * 217.32092 * 21 20 19 40 40 H 1.08998 * 110.32190 * 95.21733 * 21 20 19 41 41 H 1.08995 * 110.32672 * 118.84838 * 22 21 20 42 42 H 1.09009 * 110.32136 * 241.05045 * 22 21 20 43 43 H 1.07997 * 119.98939 * 359.97158 * 26 25 23 44 44 H 1.08003 * 120.01457 * 180.29199 * 27 26 25 45 45 H 1.07998 * 120.01469 * 179.97438 * 30 28 27 46 46 H 1.07995 * 119.98944 * 179.97438 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 7 2.7363 -4.2365 -1.1355 12 6 3.5489 -5.1877 -0.7726 13 6 3.5895 -5.2272 0.6380 14 6 2.7222 -4.2198 1.1041 15 7 2.5789 -4.0527 2.4177 16 6 3.2322 -4.8158 3.2664 17 7 4.0530 -5.7749 2.8765 18 6 4.2627 -6.0195 1.5876 19 7 5.1228 -7.0238 1.1888 20 6 6.2944 -6.4656 0.4626 21 6 7.3741 -7.5641 0.5675 22 6 6.9928 -8.3861 1.8158 23 6 5.7143 -7.7156 2.3631 24 1 5.9662 -6.9954 3.1415 25 6 4.7630 -8.7548 2.8981 26 6 3.9780 -9.4865 2.0266 27 6 3.1094 -10.4437 2.5157 28 6 3.0170 -10.6616 3.8799 29 9 2.1636 -11.5925 4.3596 30 6 3.7997 -9.9242 4.7521 31 6 4.6724 -8.9721 4.2603 32 1 -0.4850 0.8400 0.0004 33 1 0.6241 -2.5567 -0.8902 34 1 0.6247 -2.5570 0.8897 35 1 4.1016 -5.8338 -1.4384 36 1 3.0915 -4.6524 4.3247 37 1 6.6371 -5.5488 0.9425 38 1 6.0429 -6.2782 -0.5812 39 1 8.3593 -7.1156 0.6958 40 1 7.3591 -8.1956 -0.3208 41 1 6.7891 -9.4208 1.5401 42 1 7.7910 -8.3412 2.5569 43 1 4.0465 -9.3129 0.9629 44 1 2.4997 -11.0185 1.8344 45 1 3.7282 -10.0929 5.8165 46 1 5.2826 -8.3966 4.9405 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097199912.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:08 Heat of formation + Delta-G solvation = 112.218346 kcal Electronic energy + Delta-G solvation = -32637.973776 eV Core-core repulsion = 28250.996271 eV Total energy + Delta-G solvation = -4386.977505 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.150 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -48.99696 -41.73392 -40.21947 -38.61927 -37.89316 -34.21697 -33.45021 -31.99752 -31.59855 -31.24515 -31.17549 -29.19258 -27.83715 -27.21878 -24.25932 -23.86994 -23.31031 -22.93734 -22.38591 -21.46236 -20.59506 -19.91615 -17.88917 -17.68057 -17.48755 -16.74826 -16.72282 -16.40315 -16.09640 -15.68915 -15.19330 -14.94207 -14.76375 -14.55013 -14.36119 -14.08724 -13.76123 -13.60839 -13.54665 -13.46561 -13.17352 -12.96695 -12.80653 -12.61819 -12.22398 -11.93613 -11.71894 -11.62625 -11.40664 -11.19539 -11.13283 -11.10048 -10.89351 -10.82113 -10.74026 -10.34436 -10.23667 -9.83021 -9.37780 -9.20202 -8.87069 -8.65562 -8.63440 -8.45011 -7.95029 -6.26841 -4.33775 0.94312 1.02715 1.14159 1.70805 2.86895 2.93134 3.19674 3.26888 3.29956 3.32681 3.51070 4.11647 4.15444 4.20768 4.27765 4.33425 4.45151 4.60393 4.62526 4.67923 4.76329 4.82077 4.98601 5.06145 5.07385 5.08937 5.16171 5.22455 5.27958 5.39885 5.48694 5.53590 5.57157 5.62449 5.71527 5.78744 5.84501 5.90091 6.00774 6.10287 6.17368 6.26407 6.45118 6.60940 6.77560 6.96866 6.99980 7.04217 7.23035 7.58903 7.74992 7.85017 8.09832 8.57525 8.70150 9.31603 10.81482 Molecular weight = 367.15amu Principal moments of inertia in cm(-1) A = 0.013309 B = 0.002558 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.272000 B =10943.967823 C =11856.816256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.062 0.938 9 C 0.263 3.737 10 N -0.331 5.331 11 N -0.235 5.235 12 C 0.072 3.928 13 C -0.289 4.289 14 C 0.349 3.651 15 N -0.529 5.529 16 C 0.346 3.654 17 N -0.589 5.589 18 C 0.422 3.578 19 N -0.449 5.449 20 C 0.045 3.955 21 C -0.123 4.123 22 C -0.119 4.119 23 C 0.113 3.887 24 H 0.093 0.907 25 C -0.068 4.068 26 C -0.067 4.067 27 C -0.158 4.158 28 C 0.091 3.909 29 F -0.145 7.145 30 C -0.157 4.157 31 C -0.072 4.072 32 H 0.268 0.732 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.187 0.813 36 H 0.195 0.805 37 H 0.058 0.942 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.137 0.863 44 H 0.131 0.869 45 H 0.132 0.868 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.503 -20.642 5.601 25.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.735 3.265 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.118 5.118 11 N -0.050 5.050 12 C -0.124 4.124 13 C -0.305 4.305 14 C 0.100 3.900 15 N -0.251 5.251 16 C 0.052 3.948 17 N -0.312 5.312 18 C 0.172 3.828 19 N -0.167 5.167 20 C -0.081 4.081 21 C -0.161 4.161 22 C -0.158 4.158 23 C 0.006 3.994 24 H 0.110 0.890 25 C -0.069 4.069 26 C -0.086 4.086 27 C -0.177 4.177 28 C 0.072 3.928 29 F -0.123 7.123 30 C -0.176 4.176 31 C -0.091 4.091 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.204 0.796 36 H 0.212 0.788 37 H 0.077 0.923 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.155 0.845 44 H 0.149 0.851 45 H 0.150 0.850 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 13.117 -19.880 5.118 24.361 hybrid contribution 0.721 0.819 0.416 1.168 sum 13.838 -19.061 5.533 24.195 Atomic orbital electron populations 1.69923 1.06017 1.27611 1.49209 1.24901 0.94988 0.99397 0.94387 0.86284 0.79893 0.82507 0.77860 1.19711 1.20582 1.20554 1.21261 0.93539 0.89612 1.52892 0.92015 1.19829 0.85664 0.79812 1.00087 1.49524 1.35773 1.27790 0.98695 1.76981 1.10972 1.07706 1.09354 1.23529 0.98917 0.97475 0.92437 1.19685 1.09744 1.05533 0.95578 1.19040 0.91728 0.90651 0.88535 1.67512 1.27578 1.29780 1.00215 1.24499 0.86134 0.84834 0.99294 1.68308 1.24059 1.23115 1.15768 1.19488 0.90197 0.85464 0.87663 1.62097 1.14116 1.20186 1.20309 1.23229 0.87856 0.97019 0.99989 1.22343 0.98046 0.96885 0.98849 1.22440 0.95884 1.00134 0.97306 1.21498 0.91820 0.94032 0.92098 0.88952 1.19523 0.97735 0.96562 0.93069 1.20912 0.93733 0.93103 1.00817 1.21149 1.01882 1.01154 0.93546 1.17756 0.92029 0.90432 0.92591 1.91482 1.68539 1.63463 1.88862 1.21059 0.98353 0.98254 0.99914 1.20803 0.97302 0.96242 0.94743 0.92244 0.92667 0.92271 0.79577 0.78813 0.92313 0.88584 0.90537 0.90280 0.90399 0.90508 0.84479 0.85073 0.84991 0.85076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 13.29 55.43 0.74 -24.77 16 2 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 3 Si 0.91 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.53 -15.04 9.39 -34.44 -0.32 -15.36 16 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.26 6.92 6.19 -5.20 -0.03 6.89 16 10 N -0.33 -7.78 3.63 -61.65 -0.22 -8.00 16 11 N -0.23 -4.91 12.45 30.80 0.38 -4.53 16 12 C 0.07 1.19 11.42 -17.11 -0.20 1.00 16 13 C -0.29 -5.12 5.82 -106.81 -0.62 -5.74 16 14 C 0.35 7.52 8.04 -156.24 -1.26 6.26 16 15 N -0.53 -10.88 10.47 -13.97 -0.15 -11.03 16 16 C 0.35 5.62 12.24 -92.12 -1.13 4.49 16 17 N -0.59 -8.80 8.35 -13.62 -0.11 -8.92 16 18 C 0.42 6.26 6.03 -154.85 -0.93 5.33 16 19 N -0.45 -4.98 4.27 -162.12 -0.69 -5.67 16 20 C 0.04 0.40 5.94 -2.09 -0.01 0.39 16 21 C -0.12 -0.77 6.99 -25.35 -0.18 -0.95 16 22 C -0.12 -0.80 6.54 -25.34 -0.17 -0.97 16 23 C 0.11 1.06 2.04 -67.21 -0.14 0.93 16 24 H 0.09 0.96 7.09 -51.93 -0.37 0.59 16 25 C -0.07 -0.69 4.45 -104.62 -0.47 -1.15 16 26 C -0.07 -0.71 9.29 -39.59 -0.37 -1.07 16 27 C -0.16 -1.68 10.03 -39.52 -0.40 -2.07 16 28 C 0.09 1.01 7.30 -39.42 -0.29 0.73 16 29 F -0.14 -1.72 17.27 2.25 0.04 -1.68 16 30 C -0.16 -1.54 10.03 -39.51 -0.40 -1.94 16 31 C -0.07 -0.68 9.68 -39.59 -0.38 -1.06 16 32 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.06 1.64 8.14 -51.93 -0.42 1.21 16 35 H 0.19 2.22 7.35 -52.49 -0.39 1.83 16 36 H 0.20 2.40 8.06 -52.48 -0.42 1.97 16 37 H 0.06 0.60 7.97 -51.93 -0.41 0.18 16 38 H 0.10 0.80 6.99 -51.93 -0.36 0.44 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.51 7.81 -51.93 -0.41 0.11 16 42 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 43 H 0.14 1.38 7.64 -52.49 -0.40 0.98 16 44 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 45 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 46 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 391.37 15.07 5.90 5.90 Total: -1.00 -32.24 391.37 -12.20 -44.44 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -5.69 Total: 0.42 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -7.38 Total: -2.55 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: -0.06 Total: -62.92 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.24 -12.20 -44.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199912.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.659 kcal (2) G-P(sol) polarization free energy of solvation -32.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds