Wall clock time and date at job start Tue Mar 31 2020 06:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00124 * 2 1 4 4 H 1.48495 * 109.47356 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47072 * 300.00747 * 3 2 1 6 6 H 1.48505 * 109.47129 * 60.00232 * 3 2 1 7 7 C 1.37873 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99984 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00366 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47477 * 180.02562 * 9 7 2 11 11 N 1.40058 * 125.87135 * 269.99515 * 10 9 7 12 12 C 1.30252 * 109.69690 * 180.02562 * 11 10 9 13 13 C 1.41176 * 108.46428 * 359.76589 * 12 11 10 14 14 C 1.36317 * 125.87224 * 89.99722 * 10 9 7 15 15 N 1.33190 * 134.61888 * 0.02562 * 14 10 9 16 16 C 1.31501 * 120.68706 * 180.02562 * 15 14 10 17 17 N 1.32128 * 122.64176 * 359.97438 * 16 15 14 18 18 C 1.32856 * 121.19642 * 0.02562 * 17 16 15 19 19 N 1.38108 * 120.81641 * 179.97438 * 18 17 16 20 20 C 1.48720 * 111.01744 * 244.49258 * 19 18 17 21 21 C 1.54381 * 104.51692 * 158.96342 * 20 19 18 22 22 C 1.54257 * 105.14978 * 336.27274 * 21 20 19 23 23 C 1.48567 * 110.99805 * 0.02562 * 19 18 17 24 24 H 1.09001 * 110.41003 * 319.74007 * 23 19 18 25 25 C 1.50697 * 110.51060 * 82.12700 * 23 19 18 26 26 C 1.38241 * 119.97467 * 36.41775 * 25 23 19 27 27 C 1.38200 * 120.02505 * 179.72329 * 26 25 23 28 28 C 1.38454 * 119.97593 * 0.56479 * 27 26 25 29 29 F 1.35099 * 120.03015 * 179.68157 * 28 27 26 30 30 C 1.38460 * 119.94682 * 359.70571 * 28 27 26 31 31 C 1.38199 * 119.97557 * 359.97438 * 30 28 27 32 32 H 0.97000 * 120.00085 * 359.97438 * 1 2 3 33 33 H 1.08995 * 109.47028 * 59.99593 * 9 7 2 34 34 H 1.09003 * 109.46567 * 300.00432 * 9 7 2 35 35 H 1.07993 * 125.76887 * 180.02562 * 12 11 10 36 36 H 1.08004 * 118.68151 * 180.02562 * 16 15 14 37 37 H 1.09004 * 110.38960 * 40.24310 * 20 19 18 38 38 H 1.08996 * 110.50963 * 277.74752 * 20 19 18 39 39 H 1.09002 * 110.32526 * 217.32092 * 21 20 19 40 40 H 1.08998 * 110.32190 * 95.21733 * 21 20 19 41 41 H 1.08995 * 110.32672 * 118.84838 * 22 21 20 42 42 H 1.09009 * 110.32136 * 241.05045 * 22 21 20 43 43 H 1.07997 * 119.98939 * 359.97158 * 26 25 23 44 44 H 1.08003 * 120.01457 * 180.29199 * 27 26 25 45 45 H 1.07998 * 120.01469 * 179.97438 * 30 28 27 46 46 H 1.07995 * 119.98944 * 179.97438 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 7 2.7363 -4.2365 -1.1355 12 6 3.5489 -5.1877 -0.7726 13 6 3.5895 -5.2272 0.6380 14 6 2.7222 -4.2198 1.1041 15 7 2.5789 -4.0527 2.4177 16 6 3.2322 -4.8158 3.2664 17 7 4.0530 -5.7749 2.8765 18 6 4.2627 -6.0195 1.5876 19 7 5.1228 -7.0238 1.1888 20 6 6.2944 -6.4656 0.4626 21 6 7.3741 -7.5641 0.5675 22 6 6.9928 -8.3861 1.8158 23 6 5.7143 -7.7156 2.3631 24 1 5.9662 -6.9954 3.1415 25 6 4.7630 -8.7548 2.8981 26 6 3.9780 -9.4865 2.0266 27 6 3.1094 -10.4437 2.5157 28 6 3.0170 -10.6616 3.8799 29 9 2.1636 -11.5925 4.3596 30 6 3.7997 -9.9242 4.7521 31 6 4.6724 -8.9721 4.2603 32 1 -0.4850 0.8400 0.0004 33 1 0.6241 -2.5567 -0.8902 34 1 0.6247 -2.5570 0.8897 35 1 4.1016 -5.8338 -1.4384 36 1 3.0915 -4.6524 4.3247 37 1 6.6371 -5.5488 0.9425 38 1 6.0429 -6.2782 -0.5812 39 1 8.3593 -7.1156 0.6958 40 1 7.3591 -8.1956 -0.3208 41 1 6.7891 -9.4208 1.5401 42 1 7.7910 -8.3412 2.5569 43 1 4.0465 -9.3129 0.9629 44 1 2.4997 -11.0185 1.8344 45 1 3.7282 -10.0929 5.8165 46 1 5.2826 -8.3966 4.9405 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097199912.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:07 Heat of formation + Delta-G solvation = 95.864885 kcal Electronic energy + Delta-G solvation = -32638.682915 eV Core-core repulsion = 28250.996271 eV Total energy + Delta-G solvation = -4387.686644 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.150 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.86349 -43.07387 -41.17736 -39.73893 -38.89547 -35.88864 -34.94067 -33.32715 -32.86060 -32.27098 -31.99845 -30.40798 -29.23423 -28.45221 -25.61502 -25.41394 -24.41089 -23.97848 -23.43815 -22.33090 -21.51841 -21.13633 -19.13967 -18.82924 -18.77650 -18.50771 -17.84789 -17.44850 -16.92767 -16.72408 -16.55872 -16.53201 -15.83595 -15.62900 -15.44876 -15.18413 -15.00050 -14.81186 -14.52198 -14.36577 -14.17213 -13.96487 -13.91827 -13.71533 -13.62716 -13.35194 -13.05699 -12.78699 -12.68377 -12.53946 -12.39605 -12.20848 -12.20393 -12.00810 -11.86793 -11.73853 -11.64769 -11.31785 -10.78624 -10.58523 -10.21835 -9.96934 -9.85376 -9.44389 -9.42780 -8.38351 -6.55498 -0.32392 0.21150 0.30178 0.37753 1.28380 1.33953 1.35123 1.48411 1.53757 2.29164 2.32133 2.69011 2.82429 2.91660 3.11032 3.25895 3.35855 3.54968 3.56456 3.75599 3.78777 3.89036 3.99962 4.03384 4.10096 4.21979 4.33659 4.35716 4.47221 4.55218 4.61722 4.74167 4.81397 4.81700 4.91020 4.97058 5.06126 5.07664 5.13323 5.23626 5.24424 5.25084 5.35932 5.43346 5.45291 5.49694 5.66540 5.74121 5.80445 5.93982 6.00454 6.17504 6.50137 6.60477 7.13924 7.24581 8.69879 Molecular weight = 367.15amu Principal moments of inertia in cm(-1) A = 0.013309 B = 0.002558 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.272000 B =10943.967823 C =11856.816256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.019 3.981 3 Si 0.977 3.023 4 H -0.272 1.272 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.551 4.551 8 H 0.047 0.953 9 C 0.284 3.716 10 N -0.365 5.365 11 N -0.279 5.279 12 C 0.104 3.896 13 C -0.300 4.300 14 C 0.324 3.676 15 N -0.580 5.580 16 C 0.356 3.644 17 N -0.580 5.580 18 C 0.439 3.561 19 N -0.444 5.444 20 C 0.039 3.961 21 C -0.113 4.113 22 C -0.113 4.113 23 C 0.111 3.889 24 H 0.088 0.912 25 C -0.073 4.073 26 C -0.076 4.076 27 C -0.167 4.167 28 C 0.070 3.930 29 F -0.154 7.154 30 C -0.157 4.157 31 C -0.073 4.073 32 H 0.274 0.726 33 H 0.032 0.968 34 H 0.031 0.969 35 H 0.237 0.763 36 H 0.230 0.770 37 H 0.048 0.952 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.149 0.851 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.757 -21.790 6.071 28.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.182 4.182 3 Si 0.800 3.200 4 H -0.197 1.197 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.589 4.589 8 H 0.065 0.935 9 C 0.166 3.834 10 N -0.152 5.152 11 N -0.094 5.094 12 C -0.091 4.091 13 C -0.316 4.316 14 C 0.077 3.923 15 N -0.303 5.303 16 C 0.063 3.937 17 N -0.304 5.304 18 C 0.188 3.812 19 N -0.162 5.162 20 C -0.086 4.086 21 C -0.151 4.151 22 C -0.151 4.151 23 C 0.005 3.995 24 H 0.106 0.894 25 C -0.074 4.074 26 C -0.095 4.095 27 C -0.185 4.185 28 C 0.050 3.950 29 F -0.133 7.133 30 C -0.176 4.176 31 C -0.092 4.092 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.253 0.747 36 H 0.246 0.754 37 H 0.067 0.933 38 H 0.123 0.877 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.101 0.899 42 H 0.113 0.887 43 H 0.158 0.842 44 H 0.156 0.844 45 H 0.166 0.834 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 16.405 -21.076 5.586 27.286 hybrid contribution -0.188 0.944 0.364 1.029 sum 16.217 -20.133 5.950 26.527 Atomic orbital electron populations 1.70020 1.07442 1.28896 1.49420 1.25813 0.95900 1.02932 0.93517 0.85235 0.78300 0.77914 0.78549 1.19687 1.19266 1.19469 1.21394 0.92905 0.91022 1.53628 0.93455 1.19143 0.85921 0.80895 0.97469 1.49145 1.37165 1.28551 1.00320 1.76932 1.13470 1.09894 1.09076 1.24309 0.96428 0.95619 0.92763 1.19835 1.09892 1.05504 0.96346 1.19432 0.92538 0.91565 0.88783 1.67523 1.30107 1.32230 1.00482 1.25265 0.84496 0.83705 1.00225 1.68491 1.23659 1.22640 1.15641 1.19773 0.89674 0.84742 0.86983 1.62103 1.14647 1.18432 1.21056 1.23424 0.87560 0.97693 0.99939 1.22352 0.97638 0.95931 0.99201 1.22453 0.94701 1.00059 0.97878 1.21626 0.92773 0.93736 0.91371 0.89386 1.19692 0.97708 0.96562 0.93432 1.20990 0.94037 0.93347 1.01086 1.21303 1.02127 1.01417 0.93681 1.18023 0.92719 0.91032 0.93176 1.91456 1.68950 1.63897 1.88973 1.21303 0.97800 0.97791 1.00705 1.21047 0.97195 0.96073 0.94863 0.91671 0.95026 0.95071 0.74716 0.75435 0.93333 0.87667 0.88829 0.88836 0.89924 0.88690 0.84225 0.84388 0.83374 0.83080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.34 13.29 21.44 0.28 -54.05 16 2 C 0.02 1.09 5.46 84.65 0.46 1.55 16 3 Si 0.98 44.49 29.54 68.60 2.03 46.52 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.55 -32.47 9.39 25.60 0.24 -32.23 16 8 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 9 C 0.28 16.06 6.19 85.63 0.53 16.59 16 10 N -0.37 -18.07 3.63 -348.95 -1.27 -19.33 16 11 N -0.28 -12.00 12.45 -56.46 -0.70 -12.70 16 12 C 0.10 3.37 11.42 85.65 0.98 4.34 16 13 C -0.30 -10.44 5.82 -21.28 -0.12 -10.56 16 14 C 0.32 14.41 8.04 134.15 1.08 15.49 16 15 N -0.58 -24.50 10.47 -198.11 -2.07 -26.57 16 16 C 0.36 11.28 12.24 180.87 2.21 13.50 16 17 N -0.58 -16.37 8.35 -197.01 -1.64 -18.02 16 18 C 0.44 12.26 6.03 133.64 0.81 13.06 16 19 N -0.44 -8.59 4.27 -666.84 -2.85 -11.44 16 20 C 0.04 0.56 5.94 86.42 0.51 1.08 16 21 C -0.11 -0.92 6.99 31.49 0.22 -0.69 16 22 C -0.11 -1.05 6.54 31.49 0.21 -0.84 16 23 C 0.11 1.75 2.04 44.32 0.09 1.84 16 24 H 0.09 1.53 7.09 -2.39 -0.02 1.51 16 25 C -0.07 -1.29 4.45 -19.86 -0.09 -1.38 16 26 C -0.08 -1.46 9.29 22.26 0.21 -1.25 16 27 C -0.17 -3.36 10.03 22.31 0.22 -3.14 16 28 C 0.07 1.48 7.30 22.37 0.16 1.64 16 29 F -0.15 -3.59 17.27 44.97 0.78 -2.82 16 30 C -0.16 -2.80 10.03 22.31 0.22 -2.57 16 31 C -0.07 -1.19 9.68 22.26 0.22 -0.98 16 32 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 33 H 0.03 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.03 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.24 4.84 7.35 -2.91 -0.02 4.82 16 36 H 0.23 5.26 8.06 -2.91 -0.02 5.24 16 37 H 0.05 0.84 7.97 -2.38 -0.02 0.82 16 38 H 0.11 1.35 6.99 -2.39 -0.02 1.33 16 39 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.08 0.75 7.81 -2.39 -0.02 0.73 16 42 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 43 H 0.14 2.53 7.64 -2.91 -0.02 2.50 16 44 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 45 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 46 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -74.67 391.37 3.73 -70.93 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 1.02 Total: 12.05 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: 8.16 Total: 15.44 kcal Atomic # 7 Polarization: -133.87 SS G_CDS: -8.25 Total: -142.12 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.78 Total: -2.82 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -74.67 3.73 -70.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199912.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.797 kcal (2) G-P(sol) polarization free energy of solvation -74.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds