Wall clock time and date at job start Tue Mar 31 2020 05:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 111.00116 * 2 1 4 4 C 1.46900 * 110.99875 * 123.95618 * 2 1 3 5 5 H 1.09000 * 109.46878 * 211.55180 * 4 2 1 6 6 C 1.52997 * 109.47344 * 331.55112 * 4 2 1 7 7 N 1.46495 * 109.47025 * 297.49210 * 6 4 2 8 8 C 1.38119 * 119.99894 * 173.74729 * 7 6 4 9 9 N 1.32858 * 120.81186 * 359.97438 * 8 7 6 10 10 C 1.32119 * 121.19248 * 179.97438 * 9 8 7 11 11 N 1.31510 * 122.64700 * 0.02562 * 10 9 8 12 12 C 1.33192 * 120.68526 * 359.97438 * 11 10 9 13 13 C 1.40807 * 120.81016 * 180.02562 * 8 7 6 14 14 C 1.41163 * 134.70325 * 0.02562 * 13 8 7 15 15 N 1.30247 * 108.47266 * 180.20971 * 14 13 8 16 16 N 1.36311 * 134.62454 * 179.97438 * 12 11 10 17 17 C 1.46505 * 125.86985 * 0.07561 * 16 12 11 18 18 C 1.50700 * 109.46889 * 89.99919 * 17 16 12 19 19 H 1.07999 * 120.00617 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99828 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00144 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00132 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47095 * 89.99680 * 22 20 18 24 24 H 1.48492 * 109.47192 * 210.00401 * 22 20 18 25 25 H 1.48500 * 109.46677 * 330.00273 * 22 20 18 26 26 C 1.50706 * 109.46955 * 91.55431 * 4 2 1 27 27 C 1.38231 * 119.99743 * 315.27644 * 26 4 2 28 28 C 1.38233 * 119.99838 * 179.79372 * 27 26 4 29 29 C 1.38241 * 119.99667 * 0.43497 * 28 27 26 30 30 C 1.38231 * 120.00310 * 359.81467 * 29 28 27 31 31 C 1.38236 * 119.99989 * 359.97438 * 30 29 28 32 32 H 1.09001 * 109.46897 * 305.22845 * 1 2 3 33 33 H 1.09001 * 109.47107 * 65.22119 * 1 2 3 34 34 H 1.08998 * 109.47551 * 185.22858 * 1 2 3 35 35 H 1.09000 * 109.47396 * 184.61952 * 3 2 1 36 36 H 1.08998 * 109.47408 * 304.61683 * 3 2 1 37 37 H 1.08997 * 109.47088 * 64.61733 * 3 2 1 38 38 H 1.08997 * 109.47290 * 177.48887 * 6 4 2 39 39 H 1.09000 * 109.47023 * 57.49249 * 6 4 2 40 40 H 0.96999 * 120.00754 * 353.74888 * 7 6 4 41 41 H 1.08006 * 118.67968 * 180.02562 * 10 9 8 42 42 H 1.08003 * 125.76298 * 359.94854 * 14 13 8 43 43 H 1.08993 * 109.46939 * 209.99937 * 17 16 12 44 44 H 1.08998 * 109.47076 * 330.00511 * 17 16 12 45 45 H 0.97001 * 120.00113 * 180.02562 * 21 20 18 46 46 H 1.08002 * 120.00276 * 359.97438 * 27 26 4 47 47 H 1.07991 * 120.00541 * 180.27668 * 28 27 26 48 48 H 1.08003 * 119.99973 * 179.83707 * 29 28 27 49 49 H 1.08000 * 120.00227 * 179.97438 * 30 29 28 50 50 H 1.07992 * 120.00152 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 2.9432 -0.3341 1.4589 6 6 0.9942 -0.7159 2.2933 7 7 0.8296 0.6705 2.7370 8 6 -0.1235 0.9832 3.6865 9 7 -0.9000 0.0396 4.2077 10 6 -1.8137 0.3302 5.1167 11 7 -2.0118 1.5532 5.5578 12 6 -1.2835 2.5684 5.0965 13 6 -0.2966 2.3101 4.1249 14 6 0.3136 3.5452 3.8169 15 7 -0.2471 4.4737 4.5380 16 7 -1.2448 3.9086 5.3423 17 6 -2.0983 4.6330 6.2874 18 6 -1.4352 4.6650 7.6403 19 1 -0.4740 4.1934 7.7820 20 6 -2.0552 5.2973 8.6971 21 7 -3.2255 5.8721 8.5246 22 14 -1.2330 5.3377 10.3740 23 1 -0.3763 6.5464 10.4762 24 1 -2.2722 5.3763 11.4340 25 1 -0.3968 4.1225 10.5445 26 6 2.2114 -2.1984 0.7217 27 6 1.2441 -2.8581 -0.0130 28 6 1.4440 -4.1706 -0.3981 29 6 2.6074 -4.8261 -0.0407 30 6 3.5725 -4.1680 0.6985 31 6 3.3745 -2.8542 1.0798 32 1 -0.3633 0.5928 0.8395 33 1 -0.3633 0.4307 -0.9331 34 1 -0.3634 -1.0233 0.0936 35 1 3.0820 1.3436 -0.0828 36 1 1.5807 1.9199 -0.8457 37 1 1.7144 1.8685 0.9284 38 1 1.3641 -1.3208 3.1211 39 1 0.0333 -1.1068 1.9588 40 1 1.3900 1.3690 2.3641 41 1 -2.4226 -0.4688 5.5135 42 1 1.1135 3.6944 3.1067 43 1 -2.2496 5.6524 5.9326 44 1 -3.0616 4.1292 6.3668 45 1 -3.6615 6.3172 9.2680 46 1 0.3334 -2.3472 -0.2887 47 1 0.6903 -4.6846 -0.9759 48 1 2.7626 -5.8524 -0.3393 49 1 4.4812 -4.6803 0.9781 50 1 4.1282 -2.3401 1.6577 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097199974.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:33 Heat of formation + Delta-G solvation = 171.967186 kcal Electronic energy + Delta-G solvation = -32364.919472 eV Core-core repulsion = 28201.711838 eV Total energy + Delta-G solvation = -4163.207634 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.186 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.46468 -40.35679 -38.65663 -38.02397 -35.53900 -33.73254 -32.59321 -31.97927 -31.31798 -31.19507 -29.93485 -28.23999 -27.94928 -27.18348 -24.86089 -23.98722 -23.28682 -22.86023 -22.62470 -22.11310 -20.58697 -20.08019 -18.07126 -17.48837 -17.05532 -16.70690 -16.60800 -16.41506 -15.96654 -15.38778 -15.27884 -14.85883 -14.68354 -14.61493 -14.39709 -14.11371 -13.80706 -13.73314 -13.61953 -13.35559 -13.14338 -13.03563 -12.77076 -12.30011 -12.24647 -12.14374 -12.07049 -11.81221 -11.67356 -11.28445 -11.18002 -11.02176 -10.98305 -10.94693 -10.77401 -10.29962 -10.12782 -9.86331 -9.33722 -9.15730 -9.02169 -8.73314 -8.65906 -8.60843 -8.24865 -7.67527 -6.23339 -4.29872 1.06527 1.16851 1.26311 1.90217 2.85227 2.97177 3.06025 3.23350 3.28979 3.34959 3.40969 3.68115 4.29540 4.31122 4.36780 4.47246 4.52855 4.63447 4.70109 4.71461 4.79508 4.82535 4.88829 4.92696 5.05546 5.11746 5.13329 5.14626 5.25265 5.30743 5.35875 5.44719 5.46973 5.54029 5.62245 5.67294 5.70026 5.71347 5.84456 6.19287 6.26871 6.27569 6.30634 6.59111 6.62834 6.65535 6.74296 6.84258 7.00783 7.07144 7.17128 7.45121 7.69657 7.87191 7.89614 8.18882 8.69878 8.79551 9.35172 10.84876 Molecular weight = 366.19amu Principal moments of inertia in cm(-1) A = 0.018353 B = 0.001986 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.265811 B =14093.491221 C =14525.543831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 N -0.533 5.533 3 C 0.021 3.979 4 C 0.107 3.893 5 H 0.090 0.910 6 C 0.108 3.892 7 N -0.710 5.710 8 C 0.507 3.493 9 N -0.615 5.615 10 C 0.366 3.634 11 N -0.553 5.553 12 C 0.364 3.636 13 C -0.337 4.337 14 C 0.066 3.934 15 N -0.241 5.241 16 N -0.331 5.331 17 C 0.263 3.737 18 C -0.533 4.533 19 H 0.061 0.939 20 C 0.066 3.934 21 N -0.891 5.891 22 Si 0.908 3.092 23 H -0.278 1.278 24 H -0.282 1.282 25 H -0.273 1.273 26 C -0.063 4.063 27 C -0.101 4.101 28 C -0.122 4.122 29 C -0.122 4.122 30 C -0.121 4.121 31 C -0.112 4.112 32 H 0.045 0.955 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.027 0.973 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.406 0.594 41 H 0.195 0.805 42 H 0.179 0.821 43 H 0.054 0.946 44 H 0.060 0.940 45 H 0.268 0.732 46 H 0.128 0.872 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.493 -18.160 -20.183 29.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 N -0.256 5.256 3 C -0.128 4.128 4 C -0.002 4.002 5 H 0.108 0.892 6 C -0.017 4.017 7 N -0.348 5.348 8 C 0.255 3.745 9 N -0.346 5.346 10 C 0.073 3.927 11 N -0.277 5.277 12 C 0.116 3.884 13 C -0.355 4.355 14 C -0.129 4.129 15 N -0.057 5.057 16 N -0.117 5.117 17 C 0.147 3.853 18 C -0.572 4.572 19 H 0.079 0.921 20 C -0.137 4.137 21 N -0.529 5.529 22 Si 0.734 3.266 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.198 1.198 26 C -0.064 4.064 27 C -0.118 4.118 28 C -0.140 4.140 29 C -0.140 4.140 30 C -0.139 4.139 31 C -0.130 4.130 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.045 0.955 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.246 0.754 41 H 0.212 0.788 42 H 0.196 0.804 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.145 0.855 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.778 -17.626 -19.724 28.563 hybrid contribution 0.848 0.548 1.123 1.510 sum 11.626 -17.078 -18.601 27.800 Atomic orbital electron populations 1.22778 0.87013 1.02446 1.01855 1.62160 1.08475 1.13617 1.41351 1.22589 1.00884 0.88644 1.00667 1.20918 0.98349 0.92127 0.88764 0.89164 1.22001 1.00315 0.82943 0.96484 1.44682 1.37909 1.09580 1.42597 1.17892 0.85453 0.86570 0.84573 1.67953 1.12795 1.34764 1.19086 1.24425 0.89989 0.91447 0.86881 1.67519 1.30271 0.98763 1.31164 1.18938 0.91116 0.87568 0.90824 1.19610 1.09586 0.94847 1.11459 1.23318 1.00508 0.88939 1.00115 1.76938 1.01340 1.22498 1.04900 1.49468 1.27928 1.02043 1.32295 1.19806 0.88102 0.92469 0.84960 1.21235 1.05861 1.36827 0.93277 0.92079 1.24901 0.94850 0.94627 0.99328 1.69914 1.14821 1.35465 1.32657 0.86337 0.79063 0.78616 0.82539 1.20344 1.20774 1.19773 1.19449 0.94650 0.93881 0.98458 1.21215 0.99251 0.94241 0.97140 1.21166 0.97629 0.94958 1.00245 1.21157 0.94285 0.99845 0.98707 1.21088 0.99288 0.94773 0.98773 1.21006 0.96910 0.95012 1.00082 0.93610 0.91385 0.90776 0.90975 0.90712 0.95517 0.91088 0.89854 0.75384 0.78839 0.80364 0.92794 0.92219 0.92246 0.85456 0.86184 0.86323 0.86167 0.86180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 7.80 60.07 0.47 0.52 16 2 N -0.53 -4.06 4.57 -244.58 -1.12 -5.18 16 3 C 0.02 0.13 9.20 60.06 0.55 0.69 16 4 C 0.11 0.82 2.31 -68.86 -0.16 0.66 16 5 H 0.09 0.63 7.48 -51.93 -0.39 0.24 16 6 C 0.11 1.01 4.35 -4.05 -0.02 0.99 16 7 N -0.71 -7.67 4.03 -60.09 -0.24 -7.91 16 8 C 0.51 7.67 7.55 -154.84 -1.17 6.50 16 9 N -0.62 -9.65 9.69 -13.62 -0.13 -9.78 16 10 C 0.37 6.12 12.24 -92.12 -1.13 4.99 16 11 N -0.55 -11.59 10.47 -13.97 -0.15 -11.74 16 12 C 0.36 7.98 8.04 -156.23 -1.26 6.72 16 13 C -0.34 -6.04 6.14 -106.82 -0.66 -6.70 16 14 C 0.07 1.11 11.87 -17.11 -0.20 0.91 16 15 N -0.24 -5.11 12.45 30.80 0.38 -4.73 16 16 N -0.33 -7.88 3.63 -61.64 -0.22 -8.11 16 17 C 0.26 7.02 6.19 -5.19 -0.03 6.99 16 18 C -0.53 -15.24 9.39 -34.44 -0.32 -15.56 16 19 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 20 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 21 N -0.89 -25.75 13.29 55.43 0.74 -25.01 16 22 Si 0.91 21.73 29.54 -169.99 -5.02 16.71 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 26 C -0.06 -0.52 4.95 -104.62 -0.52 -1.03 16 27 C -0.10 -0.82 9.18 -39.59 -0.36 -1.18 16 28 C -0.12 -0.92 10.05 -39.58 -0.40 -1.31 16 29 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 30 C -0.12 -0.88 10.05 -39.58 -0.40 -1.27 16 31 C -0.11 -0.86 9.67 -39.58 -0.38 -1.24 16 32 H 0.05 0.44 6.04 -51.93 -0.31 0.13 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.57 4.39 -51.93 -0.23 0.34 16 35 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 36 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 37 H 0.03 0.17 5.18 -51.93 -0.27 -0.10 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.85 6.12 -51.93 -0.32 0.53 16 40 H 0.41 3.72 5.30 -40.82 -0.22 3.50 16 41 H 0.20 2.46 8.06 -52.48 -0.42 2.03 16 42 H 0.18 2.04 8.06 -52.48 -0.42 1.62 16 43 H 0.05 1.48 8.14 -51.93 -0.42 1.06 16 44 H 0.06 1.66 8.14 -51.93 -0.42 1.24 16 45 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 46 H 0.13 0.97 4.86 -52.49 -0.26 0.71 16 47 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 48 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 49 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 50 H 0.12 0.75 8.00 -52.49 -0.42 0.33 16 LS Contribution 406.04 15.07 6.12 6.12 Total: -1.00 -33.11 406.04 -12.72 -45.84 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -6.60 Total: 2.63 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -6.48 Total: 1.17 kcal Atomic # 7 Polarization: -71.73 SS G_CDS: -0.74 Total: -72.47 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.11 -12.72 -45.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199974.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.806 kcal (2) G-P(sol) polarization free energy of solvation -33.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 184.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds