Wall clock time and date at job start Tue Mar 31 2020 05:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 111.00248 * 2 1 4 4 C 1.46903 * 110.99856 * 123.95773 * 2 1 3 5 5 H 1.09003 * 109.47079 * 179.39442 * 4 2 1 6 6 C 1.52993 * 109.47590 * 59.39370 * 4 2 1 7 7 N 1.46503 * 109.47013 * 55.00075 * 6 4 2 8 8 C 1.38106 * 120.00265 * 180.02562 * 7 6 4 9 9 N 1.32866 * 120.81056 * 0.02562 * 8 7 6 10 10 C 1.32124 * 121.19404 * 179.97438 * 9 8 7 11 11 N 1.31508 * 122.64384 * 0.02562 * 10 9 8 12 12 C 1.33195 * 120.68425 * 0.02562 * 11 10 9 13 13 C 1.40808 * 120.81752 * 179.71767 * 8 7 6 14 14 C 1.41177 * 134.69352 * 0.68757 * 13 8 7 15 15 N 1.30251 * 108.46688 * 179.54143 * 14 13 8 16 16 N 1.36317 * 134.61245 * 180.02562 * 12 11 10 17 17 C 1.46496 * 125.87985 * 359.97438 * 16 12 11 18 18 C 1.50698 * 109.47315 * 89.99933 * 17 16 12 19 19 H 1.08006 * 120.00042 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00253 * 180.02562 * 18 17 16 21 21 N 1.31508 * 119.99981 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99952 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46975 * 90.00284 * 22 20 18 24 24 H 1.48503 * 109.47160 * 209.99828 * 22 20 18 25 25 H 1.48503 * 109.47385 * 330.00000 * 22 20 18 26 26 C 1.50704 * 109.46662 * 299.39379 * 4 2 1 27 27 C 1.38237 * 120.00146 * 69.07455 * 26 4 2 28 28 C 1.38227 * 120.00056 * 179.97438 * 27 26 4 29 29 C 1.38243 * 120.00275 * 359.97438 * 28 27 26 30 30 C 1.38237 * 119.99438 * 359.97438 * 29 28 27 31 31 C 1.38229 * 120.00307 * 0.07267 * 30 29 28 32 32 H 1.08998 * 109.47551 * 304.45788 * 1 2 3 33 33 H 1.08999 * 109.47087 * 64.46074 * 1 2 3 34 34 H 1.08997 * 109.47339 * 184.45619 * 1 2 3 35 35 H 1.08999 * 109.46806 * 183.95326 * 3 2 1 36 36 H 1.09000 * 109.46903 * 303.95108 * 3 2 1 37 37 H 1.09005 * 109.46927 * 63.95174 * 3 2 1 38 38 H 1.08995 * 109.47909 * 175.00094 * 6 4 2 39 39 H 1.09003 * 109.47116 * 295.00502 * 6 4 2 40 40 H 0.96998 * 120.00075 * 359.97438 * 7 6 4 41 41 H 1.07999 * 118.68238 * 180.02562 * 10 9 8 42 42 H 1.07998 * 125.76854 * 359.31275 * 14 13 8 43 43 H 1.08999 * 109.47651 * 210.00263 * 17 16 12 44 44 H 1.09010 * 109.46586 * 330.00080 * 17 16 12 45 45 H 0.97004 * 120.00657 * 180.02562 * 21 20 18 46 46 H 1.07999 * 119.99596 * 359.97438 * 27 26 4 47 47 H 1.07998 * 120.00068 * 179.97438 * 28 27 26 48 48 H 1.07990 * 120.00141 * 179.72187 * 29 28 27 49 49 H 1.08004 * 119.99619 * 179.97438 * 30 29 28 50 50 H 1.07998 * 119.99898 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1376 5 1 3.0850 -0.7589 1.1074 6 6 1.4926 -2.2088 1.0574 7 7 1.8480 -2.7782 -0.2448 8 6 1.4956 -4.0783 -0.5495 9 7 0.8337 -4.8269 0.3261 10 6 0.4923 -6.0714 0.0424 11 7 0.7812 -6.6418 -1.1068 12 6 1.4436 -5.9737 -2.0497 13 6 1.8234 -4.6408 -1.7980 14 6 2.5025 -4.1805 -2.9470 15 7 2.5260 -5.1420 -3.8252 16 7 1.8808 -6.2716 -3.3060 17 6 1.7031 -7.5516 -3.9960 18 6 0.4106 -7.5296 -4.7705 19 1 -0.2157 -6.6499 -4.7511 20 6 0.0274 -8.6325 -5.5039 21 7 0.7897 -9.7039 -5.5272 22 14 -1.5751 -8.6053 -6.4634 23 1 -1.3230 -8.0912 -7.8335 24 1 -2.1266 -9.9818 -6.5449 25 1 -2.5496 -7.7216 -5.7745 26 6 1.5243 -0.1407 2.4253 27 6 0.1889 -0.2050 2.7769 28 6 -0.2431 0.3682 3.9582 29 6 0.6604 1.0051 4.7884 30 6 1.9959 1.0684 4.4373 31 6 2.4277 0.4961 3.2554 32 1 -0.3634 0.5814 0.8473 33 1 -0.3633 0.4431 -0.9272 34 1 -0.3634 -1.0245 0.0798 35 1 3.0828 1.3431 -0.0709 36 1 1.5899 1.9163 -0.8525 37 1 1.7044 1.8723 0.9233 38 1 1.9531 -2.7988 1.8497 39 1 0.4092 -2.2231 1.1766 40 1 2.3303 -2.2418 -0.8933 41 1 -0.0456 -6.6433 0.7840 42 1 2.9271 -3.1961 -3.0772 43 1 2.5348 -7.7135 -4.6817 44 1 1.6740 -8.3583 -3.2633 45 1 0.5204 -10.4797 -6.0434 46 1 -0.5168 -0.7029 2.1285 47 1 -1.2864 0.3184 4.2327 48 1 0.3221 1.4568 5.7092 49 1 2.7017 1.5664 5.0856 50 1 3.4711 0.5459 2.9810 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097199975.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:37 Heat of formation + Delta-G solvation = 161.896741 kcal Electronic energy + Delta-G solvation = -32202.793903 eV Core-core repulsion = 28039.149582 eV Total energy + Delta-G solvation = -4163.644321 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.186 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.30578 -40.57257 -38.42403 -37.71097 -35.74848 -33.68556 -32.52244 -31.74849 -31.43686 -31.20358 -29.93484 -28.05037 -27.99134 -27.10864 -24.74825 -23.83323 -23.34516 -22.84067 -22.79532 -22.00755 -20.41352 -19.98282 -17.90663 -17.38412 -17.06990 -16.63175 -16.56435 -16.23642 -16.03936 -15.43016 -15.16319 -14.88713 -14.76758 -14.61978 -14.42814 -14.05365 -13.80430 -13.75093 -13.55934 -13.34139 -13.01375 -12.92165 -12.71531 -12.46795 -12.20599 -12.10929 -11.89608 -11.64811 -11.60022 -11.53557 -11.30018 -11.07402 -10.91560 -10.84479 -10.70252 -10.24893 -10.00192 -9.77720 -9.31780 -9.19851 -9.16081 -8.73458 -8.60015 -8.54977 -8.12235 -7.52798 -6.17946 -4.24060 0.89830 0.99978 1.40262 2.03369 3.00776 3.10913 3.19212 3.27096 3.32469 3.38305 3.39214 3.64454 4.25732 4.34955 4.37138 4.48443 4.58517 4.61716 4.70987 4.73371 4.82966 4.85573 4.87971 5.04747 5.08426 5.09721 5.17528 5.18585 5.25673 5.27969 5.31997 5.50777 5.54938 5.56437 5.58865 5.63698 5.66597 5.77364 5.81802 6.04205 6.11446 6.14072 6.39547 6.57428 6.58561 6.61987 6.77364 7.05389 7.08628 7.17643 7.36703 7.60265 7.78307 7.95663 8.01973 8.31665 8.76899 8.91066 9.40636 10.90243 Molecular weight = 366.19amu Principal moments of inertia in cm(-1) A = 0.018183 B = 0.001945 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.512255 B =14395.329041 C =14584.374110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 N -0.527 5.527 3 C 0.022 3.978 4 C 0.107 3.893 5 H 0.097 0.903 6 C 0.143 3.857 7 N -0.695 5.695 8 C 0.509 3.491 9 N -0.622 5.622 10 C 0.366 3.634 11 N -0.557 5.557 12 C 0.362 3.638 13 C -0.336 4.336 14 C 0.071 3.929 15 N -0.246 5.246 16 N -0.333 5.333 17 C 0.264 3.736 18 C -0.531 4.531 19 H 0.061 0.939 20 C 0.066 3.934 21 N -0.892 5.892 22 Si 0.907 3.093 23 H -0.278 1.278 24 H -0.283 1.283 25 H -0.273 1.273 26 C -0.113 4.113 27 C -0.109 4.109 28 C -0.121 4.121 29 C -0.118 4.118 30 C -0.122 4.122 31 C -0.105 4.105 32 H 0.039 0.961 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.030 0.970 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.416 0.584 41 H 0.193 0.807 42 H 0.182 0.818 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.267 0.733 46 H 0.128 0.872 47 H 0.122 0.878 48 H 0.120 0.880 49 H 0.121 0.879 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.393 24.521 20.046 31.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 N -0.249 5.249 3 C -0.126 4.126 4 C -0.002 4.002 5 H 0.115 0.885 6 C 0.018 3.982 7 N -0.328 5.328 8 C 0.257 3.743 9 N -0.353 5.353 10 C 0.072 3.928 11 N -0.282 5.282 12 C 0.115 3.885 13 C -0.354 4.354 14 C -0.124 4.124 15 N -0.062 5.062 16 N -0.119 5.119 17 C 0.147 3.853 18 C -0.570 4.570 19 H 0.079 0.921 20 C -0.137 4.137 21 N -0.530 5.530 22 Si 0.734 3.266 23 H -0.204 1.204 24 H -0.208 1.208 25 H -0.198 1.198 26 C -0.116 4.116 27 C -0.127 4.127 28 C -0.139 4.139 29 C -0.136 4.136 30 C -0.140 4.140 31 C -0.124 4.124 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.049 0.951 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.254 0.746 41 H 0.209 0.791 42 H 0.199 0.801 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.146 0.854 47 H 0.140 0.860 48 H 0.138 0.862 49 H 0.139 0.861 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.443 23.031 18.903 29.895 hybrid contribution -0.865 1.240 0.175 1.522 sum 1.578 24.271 19.077 30.911 Atomic orbital electron populations 1.22782 0.87325 1.02654 1.01380 1.62372 1.08639 1.14235 1.39681 1.22393 1.00693 0.88674 1.00843 1.21064 1.00428 0.92813 0.85874 0.88484 1.21341 1.00650 0.90547 0.85639 1.44154 1.61149 1.09609 1.17907 1.17921 0.85224 0.84999 0.86200 1.67949 1.23707 1.09100 1.34554 1.24368 0.90821 0.86862 0.90734 1.67507 1.19654 1.39011 1.01996 1.18940 0.92193 0.89151 0.88262 1.19588 1.18268 0.98871 0.98696 1.23379 0.99696 0.99104 0.90253 1.76936 1.14456 0.93303 1.21477 1.49430 1.41833 1.12441 1.08244 1.19771 0.98605 0.74047 0.92887 1.21253 1.05124 1.01009 1.29622 0.92074 1.24898 0.97722 0.94844 0.96286 1.69917 1.37735 1.04264 1.41043 0.86346 0.82795 0.77439 0.80016 1.20378 1.20837 1.19777 1.20365 0.94197 1.00025 0.96978 1.21301 0.95472 0.99260 0.96670 1.21186 0.99834 0.98301 0.94544 1.21197 0.93556 0.99250 0.99601 1.21149 0.95990 0.99981 0.96899 1.21067 0.99251 0.97725 0.94335 0.94277 0.91241 0.90599 0.91302 0.91236 0.95121 0.90849 0.91211 0.74605 0.79059 0.80080 0.92873 0.92296 0.92311 0.85379 0.85970 0.86160 0.86077 0.86067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 7.88 60.06 0.47 0.52 16 2 N -0.53 -3.91 4.46 -244.59 -1.09 -5.01 16 3 C 0.02 0.14 9.35 60.06 0.56 0.70 16 4 C 0.11 0.78 2.30 -68.86 -0.16 0.62 16 5 H 0.10 0.66 7.90 -51.93 -0.41 0.25 16 6 C 0.14 1.34 4.52 -4.04 -0.02 1.32 16 7 N -0.69 -7.85 5.51 -60.09 -0.33 -8.18 16 8 C 0.51 7.95 7.55 -154.85 -1.17 6.78 16 9 N -0.62 -9.98 9.69 -13.62 -0.13 -10.11 16 10 C 0.37 6.26 12.24 -92.12 -1.13 5.14 16 11 N -0.56 -11.95 10.47 -13.97 -0.15 -12.09 16 12 C 0.36 8.14 8.04 -156.23 -1.26 6.89 16 13 C -0.34 -6.22 6.14 -106.82 -0.66 -6.88 16 14 C 0.07 1.23 11.87 -17.11 -0.20 1.03 16 15 N -0.25 -5.37 12.45 30.80 0.38 -4.98 16 16 N -0.33 -8.12 3.63 -61.64 -0.22 -8.34 16 17 C 0.26 7.15 6.19 -5.20 -0.03 7.12 16 18 C -0.53 -15.38 9.39 -34.44 -0.32 -15.71 16 19 H 0.06 1.82 7.81 -52.48 -0.41 1.41 16 20 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 21 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 22 Si 0.91 21.97 29.54 -169.99 -5.02 16.94 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 26 C -0.11 -0.83 3.57 -104.62 -0.37 -1.20 16 27 C -0.11 -0.81 6.96 -39.59 -0.28 -1.09 16 28 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 29 C -0.12 -0.76 10.05 -39.58 -0.40 -1.16 16 30 C -0.12 -0.78 10.05 -39.58 -0.40 -1.18 16 31 C -0.11 -0.71 9.50 -39.58 -0.38 -1.08 16 32 H 0.04 0.28 5.50 -51.93 -0.29 0.00 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.67 5.67 -51.93 -0.29 0.37 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.03 0.21 7.06 -51.93 -0.37 -0.16 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.70 5.22 -51.93 -0.27 0.43 16 40 H 0.42 4.17 8.01 -40.82 -0.33 3.84 16 41 H 0.19 2.50 8.06 -52.49 -0.42 2.08 16 42 H 0.18 2.22 8.06 -52.49 -0.42 1.80 16 43 H 0.05 1.48 8.14 -51.93 -0.42 1.06 16 44 H 0.06 1.67 8.14 -51.92 -0.42 1.25 16 45 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.13 0.93 5.06 -52.49 -0.27 0.67 16 47 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 48 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 49 H 0.12 0.56 8.06 -52.48 -0.42 0.13 16 50 H 0.12 0.64 7.97 -52.49 -0.42 0.23 16 LS Contribution 409.09 15.07 6.16 6.16 Total: -1.00 -33.41 409.09 -12.72 -46.13 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -6.83 Total: 2.43 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: -6.23 Total: 2.37 kcal Atomic # 7 Polarization: -73.24 SS G_CDS: -0.80 Total: -74.04 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.41 -12.72 -46.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199975.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.029 kcal (2) G-P(sol) polarization free energy of solvation -33.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds