Wall clock time and date at job start Tue Mar 31 2020 05:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 111.00248 * 2 1 4 4 C 1.46903 * 110.99856 * 123.95773 * 2 1 3 5 5 H 1.09003 * 109.47079 * 179.39442 * 4 2 1 6 6 C 1.52993 * 109.47590 * 59.39370 * 4 2 1 7 7 N 1.46503 * 109.47013 * 55.00075 * 6 4 2 8 8 C 1.38106 * 120.00265 * 180.02562 * 7 6 4 9 9 N 1.32866 * 120.81056 * 0.02562 * 8 7 6 10 10 C 1.32124 * 121.19404 * 179.97438 * 9 8 7 11 11 N 1.31508 * 122.64384 * 0.02562 * 10 9 8 12 12 C 1.33195 * 120.68425 * 0.02562 * 11 10 9 13 13 C 1.40808 * 120.81752 * 179.71767 * 8 7 6 14 14 C 1.41177 * 134.69352 * 0.68757 * 13 8 7 15 15 N 1.30251 * 108.46688 * 179.54143 * 14 13 8 16 16 N 1.36317 * 134.61245 * 180.02562 * 12 11 10 17 17 C 1.46496 * 125.87985 * 359.97438 * 16 12 11 18 18 C 1.50698 * 109.47315 * 89.99933 * 17 16 12 19 19 H 1.08006 * 120.00042 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00253 * 180.02562 * 18 17 16 21 21 N 1.31508 * 119.99981 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99952 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46975 * 90.00284 * 22 20 18 24 24 H 1.48503 * 109.47160 * 209.99828 * 22 20 18 25 25 H 1.48503 * 109.47385 * 330.00000 * 22 20 18 26 26 C 1.50704 * 109.46662 * 299.39379 * 4 2 1 27 27 C 1.38237 * 120.00146 * 69.07455 * 26 4 2 28 28 C 1.38227 * 120.00056 * 179.97438 * 27 26 4 29 29 C 1.38243 * 120.00275 * 359.97438 * 28 27 26 30 30 C 1.38237 * 119.99438 * 359.97438 * 29 28 27 31 31 C 1.38229 * 120.00307 * 0.07267 * 30 29 28 32 32 H 1.08998 * 109.47551 * 304.45788 * 1 2 3 33 33 H 1.08999 * 109.47087 * 64.46074 * 1 2 3 34 34 H 1.08997 * 109.47339 * 184.45619 * 1 2 3 35 35 H 1.08999 * 109.46806 * 183.95326 * 3 2 1 36 36 H 1.09000 * 109.46903 * 303.95108 * 3 2 1 37 37 H 1.09005 * 109.46927 * 63.95174 * 3 2 1 38 38 H 1.08995 * 109.47909 * 175.00094 * 6 4 2 39 39 H 1.09003 * 109.47116 * 295.00502 * 6 4 2 40 40 H 0.96998 * 120.00075 * 359.97438 * 7 6 4 41 41 H 1.07999 * 118.68238 * 180.02562 * 10 9 8 42 42 H 1.07998 * 125.76854 * 359.31275 * 14 13 8 43 43 H 1.08999 * 109.47651 * 210.00263 * 17 16 12 44 44 H 1.09010 * 109.46586 * 330.00080 * 17 16 12 45 45 H 0.97004 * 120.00657 * 180.02562 * 21 20 18 46 46 H 1.07999 * 119.99596 * 359.97438 * 27 26 4 47 47 H 1.07998 * 120.00068 * 179.97438 * 28 27 26 48 48 H 1.07990 * 120.00141 * 179.72187 * 29 28 27 49 49 H 1.08004 * 119.99619 * 179.97438 * 30 29 28 50 50 H 1.07998 * 119.99898 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1376 5 1 3.0850 -0.7589 1.1074 6 6 1.4926 -2.2088 1.0574 7 7 1.8480 -2.7782 -0.2448 8 6 1.4956 -4.0783 -0.5495 9 7 0.8337 -4.8269 0.3261 10 6 0.4923 -6.0714 0.0424 11 7 0.7812 -6.6418 -1.1068 12 6 1.4436 -5.9737 -2.0497 13 6 1.8234 -4.6408 -1.7980 14 6 2.5025 -4.1805 -2.9470 15 7 2.5260 -5.1420 -3.8252 16 7 1.8808 -6.2716 -3.3060 17 6 1.7031 -7.5516 -3.9960 18 6 0.4106 -7.5296 -4.7705 19 1 -0.2157 -6.6499 -4.7511 20 6 0.0274 -8.6325 -5.5039 21 7 0.7897 -9.7039 -5.5272 22 14 -1.5751 -8.6053 -6.4634 23 1 -1.3230 -8.0912 -7.8335 24 1 -2.1266 -9.9818 -6.5449 25 1 -2.5496 -7.7216 -5.7745 26 6 1.5243 -0.1407 2.4253 27 6 0.1889 -0.2050 2.7769 28 6 -0.2431 0.3682 3.9582 29 6 0.6604 1.0051 4.7884 30 6 1.9959 1.0684 4.4373 31 6 2.4277 0.4961 3.2554 32 1 -0.3634 0.5814 0.8473 33 1 -0.3633 0.4431 -0.9272 34 1 -0.3634 -1.0245 0.0798 35 1 3.0828 1.3431 -0.0709 36 1 1.5899 1.9163 -0.8525 37 1 1.7044 1.8723 0.9233 38 1 1.9531 -2.7988 1.8497 39 1 0.4092 -2.2231 1.1766 40 1 2.3303 -2.2418 -0.8933 41 1 -0.0456 -6.6433 0.7840 42 1 2.9271 -3.1961 -3.0772 43 1 2.5348 -7.7135 -4.6817 44 1 1.6740 -8.3583 -3.2633 45 1 0.5204 -10.4797 -6.0434 46 1 -0.5168 -0.7029 2.1285 47 1 -1.2864 0.3184 4.2327 48 1 0.3221 1.4568 5.7092 49 1 2.7017 1.5664 5.0856 50 1 3.4711 0.5459 2.9810 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097199975.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:36 Heat of formation + Delta-G solvation = 141.966796 kcal Electronic energy + Delta-G solvation = -32203.658130 eV Core-core repulsion = 28039.149582 eV Total energy + Delta-G solvation = -4164.508548 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.186 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.76972 -41.16057 -39.77843 -38.41201 -36.83528 -35.68401 -33.83355 -32.95296 -32.52969 -31.94258 -31.11845 -29.28796 -28.70975 -28.56240 -25.78575 -25.27310 -24.90724 -23.74219 -23.34389 -23.10939 -21.50000 -21.03030 -19.32302 -18.79358 -18.59971 -17.90177 -17.41481 -17.18249 -16.91972 -16.57502 -16.52119 -16.14641 -15.58825 -15.38231 -15.30388 -15.19298 -15.03772 -14.90035 -14.83779 -14.31296 -14.23382 -13.86962 -13.66391 -13.50754 -13.40684 -13.03485 -13.01335 -12.77974 -12.73864 -12.60723 -12.38373 -12.31337 -12.24219 -12.10915 -12.07340 -11.80951 -11.67211 -11.46490 -10.74826 -10.56129 -10.03277 -9.81010 -9.72321 -9.70068 -9.30596 -8.90711 -8.34217 -6.51128 0.01421 0.39565 0.50942 0.57918 1.33444 1.36470 1.42088 1.51179 1.67835 2.07478 2.32527 2.83403 2.95165 3.03927 3.07384 3.31377 3.43593 3.66057 3.72911 3.81059 3.93460 4.06862 4.15141 4.15434 4.25589 4.27232 4.31786 4.47654 4.52541 4.61596 4.67100 4.70507 4.73665 4.82405 4.85162 4.89514 4.93753 5.07712 5.09911 5.10111 5.15976 5.19304 5.49176 5.56540 5.58959 5.62034 5.64687 5.79069 5.80329 5.95281 6.04248 6.07488 6.11127 6.19854 6.54810 6.64199 6.85629 7.18146 7.50450 8.73288 Molecular weight = 366.19amu Principal moments of inertia in cm(-1) A = 0.018183 B = 0.001945 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.512255 B =14395.329041 C =14584.374110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.532 5.532 3 C 0.025 3.975 4 C 0.117 3.883 5 H 0.109 0.891 6 C 0.144 3.856 7 N -0.669 5.669 8 C 0.518 3.482 9 N -0.617 5.617 10 C 0.376 3.624 11 N -0.607 5.607 12 C 0.335 3.665 13 C -0.344 4.344 14 C 0.102 3.898 15 N -0.291 5.291 16 N -0.367 5.367 17 C 0.285 3.715 18 C -0.550 4.550 19 H 0.045 0.955 20 C 0.018 3.982 21 N -0.919 5.919 22 Si 0.976 3.024 23 H -0.267 1.267 24 H -0.269 1.269 25 H -0.274 1.274 26 C -0.120 4.120 27 C -0.121 4.121 28 C -0.132 4.132 29 C -0.125 4.125 30 C -0.129 4.129 31 C -0.111 4.111 32 H 0.042 0.958 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.026 0.974 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.426 0.574 41 H 0.228 0.772 42 H 0.237 0.763 43 H 0.031 0.969 44 H 0.032 0.968 45 H 0.274 0.726 46 H 0.125 0.875 47 H 0.132 0.868 48 H 0.136 0.864 49 H 0.139 0.861 50 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.185 27.346 21.462 34.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.254 5.254 3 C -0.123 4.123 4 C 0.009 3.991 5 H 0.127 0.873 6 C 0.020 3.980 7 N -0.301 5.301 8 C 0.263 3.737 9 N -0.349 5.349 10 C 0.083 3.917 11 N -0.334 5.334 12 C 0.089 3.911 13 C -0.362 4.362 14 C -0.093 4.093 15 N -0.107 5.107 16 N -0.153 5.153 17 C 0.166 3.834 18 C -0.589 4.589 19 H 0.063 0.937 20 C -0.182 4.182 21 N -0.558 5.558 22 Si 0.799 3.201 23 H -0.192 1.192 24 H -0.194 1.194 25 H -0.199 1.199 26 C -0.122 4.122 27 C -0.139 4.139 28 C -0.150 4.150 29 C -0.143 4.143 30 C -0.147 4.147 31 C -0.129 4.129 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.045 0.955 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.266 0.734 41 H 0.244 0.756 42 H 0.253 0.747 43 H 0.049 0.951 44 H 0.050 0.950 45 H 0.083 0.917 46 H 0.143 0.857 47 H 0.150 0.850 48 H 0.154 0.846 49 H 0.157 0.843 50 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.263 25.935 20.353 33.045 hybrid contribution -0.778 0.556 -0.017 0.957 sum 1.485 26.491 20.337 33.430 Atomic orbital electron populations 1.22711 0.87705 1.01867 1.01490 1.62394 1.08358 1.15038 1.39645 1.22394 1.01306 0.87853 1.00722 1.20950 1.00903 0.91193 0.86103 0.87259 1.21451 1.00543 0.91876 0.84126 1.44241 1.59208 1.07815 1.18809 1.18008 0.84342 0.86250 0.85086 1.68102 1.23897 1.08744 1.34150 1.25127 0.89296 0.87328 0.89953 1.67521 1.21881 1.40631 1.03400 1.19364 0.92751 0.91099 0.87890 1.19714 1.18826 0.97547 1.00099 1.24233 0.96808 0.99785 0.88447 1.76887 1.16678 0.93706 1.23381 1.49074 1.44403 1.12449 1.09384 1.19105 0.97124 0.75588 0.91596 1.21379 1.05875 1.00870 1.30734 0.93679 1.25808 1.01280 0.94203 0.96960 1.70013 1.39397 1.04831 1.41520 0.85297 0.78152 0.77985 0.78652 1.19175 1.19371 1.19896 1.20347 0.94247 1.00562 0.97065 1.21372 0.95711 0.99756 0.97061 1.21400 1.00646 0.98405 0.94569 1.21474 0.93696 0.98965 1.00134 1.21436 0.96370 0.99781 0.97075 1.21283 0.99910 0.97418 0.94302 0.93957 0.91335 0.91826 0.90198 0.91051 0.95509 0.91028 0.91586 0.73432 0.75571 0.74715 0.95139 0.95005 0.91716 0.85722 0.85006 0.84571 0.84337 0.84624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 7.88 127.69 1.01 1.15 16 2 N -0.53 -6.52 4.46 -927.74 -4.14 -10.66 16 3 C 0.03 0.25 9.35 127.69 1.19 1.44 16 4 C 0.12 1.39 2.30 44.17 0.10 1.49 16 5 H 0.11 1.08 7.90 -2.39 -0.02 1.06 16 6 C 0.14 2.35 4.52 86.38 0.39 2.74 16 7 N -0.67 -13.28 5.51 -344.01 -1.90 -15.18 16 8 C 0.52 15.24 7.55 133.64 1.01 16.25 16 9 N -0.62 -18.89 9.69 -197.02 -1.91 -20.80 16 10 C 0.38 12.63 12.24 180.87 2.21 14.85 16 11 N -0.61 -26.75 10.47 -198.10 -2.07 -28.82 16 12 C 0.34 15.53 8.04 134.14 1.08 16.61 16 13 C -0.34 -12.47 6.14 -21.29 -0.13 -12.60 16 14 C 0.10 3.41 11.87 85.65 1.02 4.43 16 15 N -0.29 -12.98 12.45 -56.45 -0.70 -13.69 16 16 N -0.37 -18.74 3.63 -348.94 -1.27 -20.01 16 17 C 0.28 16.50 6.19 85.63 0.53 17.03 16 18 C -0.55 -33.33 9.39 25.60 0.24 -33.09 16 19 H 0.04 2.80 7.81 -2.91 -0.02 2.78 16 20 C 0.02 1.06 5.46 84.66 0.46 1.52 16 21 N -0.92 -55.27 13.29 21.45 0.28 -54.98 16 22 Si 0.98 45.65 29.54 68.60 2.03 47.68 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 26 C -0.12 -1.48 3.57 -19.86 -0.07 -1.55 16 27 C -0.12 -1.61 6.96 22.27 0.15 -1.46 16 28 C -0.13 -1.62 10.05 22.27 0.22 -1.40 16 29 C -0.12 -1.35 10.05 22.27 0.22 -1.13 16 30 C -0.13 -1.32 10.05 22.27 0.22 -1.10 16 31 C -0.11 -1.20 9.50 22.27 0.21 -0.99 16 32 H 0.04 0.55 5.50 -2.39 -0.01 0.54 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.06 1.02 5.67 -2.39 -0.01 1.01 16 35 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.03 0.30 7.06 -2.38 -0.02 0.28 16 38 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.20 5.22 -2.39 -0.01 1.19 16 40 H 0.43 7.00 8.01 -92.71 -0.74 6.26 16 41 H 0.23 5.59 8.06 -2.91 -0.02 5.57 16 42 H 0.24 4.86 8.06 -2.91 -0.02 4.84 16 43 H 0.03 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.03 1.96 8.14 -2.38 -0.02 1.94 16 45 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 46 H 0.12 1.68 5.06 -2.91 -0.01 1.67 16 47 H 0.13 1.24 8.06 -2.91 -0.02 1.22 16 48 H 0.14 0.95 8.06 -2.92 -0.02 0.93 16 49 H 0.14 0.88 8.06 -2.91 -0.02 0.85 16 50 H 0.14 1.01 7.97 -2.91 -0.02 0.99 16 Total: -1.00 -76.47 409.09 0.64 -75.83 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.24 Total: 16.42 kcal Atomic # 6 Polarization: 14.13 SS G_CDS: 10.08 Total: 24.20 kcal Atomic # 7 Polarization: -152.43 SS G_CDS: -11.70 Total: -164.13 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -76.47 0.64 -75.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199975.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.799 kcal (2) G-P(sol) polarization free energy of solvation -76.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds