Wall clock time and date at job start Tue Mar 31 2020 06:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99816 * 2 1 4 4 H 1.48508 * 109.46976 * 239.99848 * 3 2 1 5 5 H 1.48498 * 109.47270 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47193 * 120.00154 * 3 2 1 7 7 C 1.37871 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00218 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00193 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.47188 * 179.97438 * 9 7 2 11 11 N 1.40053 * 125.87187 * 269.99478 * 10 9 7 12 12 C 1.30252 * 109.69527 * 179.97438 * 11 10 9 13 13 C 1.41168 * 108.46953 * 359.77326 * 12 11 10 14 14 C 1.36312 * 125.87390 * 89.99643 * 10 9 7 15 15 N 1.33201 * 134.61455 * 0.02562 * 14 10 9 16 16 C 1.31508 * 120.68414 * 179.97438 * 15 14 10 17 17 N 1.32123 * 122.64333 * 0.02562 * 16 15 14 18 18 C 1.32867 * 121.19699 * 359.97438 * 17 16 15 19 19 N 1.38105 * 120.81466 * 179.97438 * 18 17 16 20 20 C 1.47441 * 111.00122 * 239.15679 * 19 18 17 21 21 C 1.54318 * 107.23407 * 123.25805 * 20 19 18 22 22 C 1.55138 * 103.01734 * 22.28314 * 21 20 19 23 23 C 1.47841 * 111.00016 * 0.02562 * 19 18 17 24 24 H 1.08997 * 110.37682 * 332.57686 * 23 19 18 25 25 C 1.50704 * 110.37541 * 94.80460 * 23 19 18 26 26 C 1.38265 * 119.99039 * 220.00247 * 25 23 19 27 27 C 1.38226 * 120.04947 * 180.30133 * 26 25 23 28 28 C 1.38221 * 120.02532 * 359.44039 * 27 26 25 29 29 C 1.38431 * 119.97356 * 0.55452 * 28 27 26 30 30 F 1.35104 * 120.02518 * 179.69710 * 29 28 27 31 31 C 1.38183 * 119.98486 * 40.02096 * 25 23 19 32 32 H 0.97002 * 119.99885 * 359.97438 * 1 2 3 33 33 H 1.08998 * 109.47455 * 59.99811 * 9 7 2 34 34 H 1.08996 * 109.47180 * 299.99526 * 9 7 2 35 35 H 1.08004 * 125.76673 * 179.97438 * 12 11 10 36 36 H 1.07994 * 118.68053 * 180.02562 * 16 15 14 37 37 H 1.08993 * 109.88916 * 242.66685 * 20 19 18 38 38 H 1.09009 * 109.88568 * 3.85465 * 20 19 18 39 39 H 1.08999 * 110.70753 * 140.66417 * 21 20 19 40 40 H 1.09002 * 110.70502 * 263.90672 * 21 20 19 41 41 H 1.08997 * 110.99650 * 206.25384 * 22 21 20 42 42 H 1.09008 * 110.99158 * 82.43497 * 22 21 20 43 43 H 1.08002 * 119.97048 * 0.02562 * 26 25 23 44 44 H 1.08000 * 119.98317 * 179.70412 * 27 26 25 45 45 H 1.08000 * 120.00673 * 180.27792 * 28 27 26 46 46 H 1.07995 * 120.01109 * 0.02562 * 31 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2031 -3.6127 -0.0027 11 7 2.7364 -4.2355 -1.1381 12 6 3.5497 -5.1863 -0.7761 13 6 3.5908 -5.2267 0.6344 14 6 2.7223 -4.2208 1.1013 15 7 2.5790 -4.0549 2.4152 16 6 3.2315 -4.8193 3.2632 17 7 4.0522 -5.7782 2.8725 18 6 4.2619 -6.0217 1.5833 19 7 5.1220 -7.0257 1.1837 20 6 6.2162 -6.4858 0.3561 21 6 7.5430 -6.8834 1.0365 22 6 7.1398 -8.1074 1.9001 23 6 5.7105 -7.7152 2.3516 24 1 5.7527 -7.0422 3.2080 25 6 4.9108 -8.9463 2.6920 26 6 4.6710 -9.2709 4.0145 27 6 3.9429 -10.4032 4.3282 28 6 3.4440 -11.2061 3.3198 29 6 3.6834 -10.8821 1.9954 30 9 3.2014 -11.6695 1.0090 31 6 4.4178 -9.7506 1.6823 32 1 -0.4850 0.8401 0.0004 33 1 0.6247 -2.5563 -0.8919 34 1 0.6242 -2.5575 0.8880 35 1 4.1021 -5.8323 -1.4425 36 1 3.0909 -4.6569 4.3216 37 1 6.1700 -6.9141 -0.6451 38 1 6.1385 -5.3999 0.3012 39 1 8.2882 -7.1653 0.2927 40 1 7.9118 -6.0729 1.6652 41 1 7.8040 -8.2164 2.7574 42 1 7.1237 -9.0188 1.3024 43 1 5.0566 -8.6415 4.8030 44 1 3.7603 -10.6583 5.3617 45 1 2.8714 -12.0883 3.5652 46 1 4.6059 -9.4973 0.6495 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200009.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:48 Heat of formation + Delta-G solvation = 112.274014 kcal Electronic energy + Delta-G solvation = -32673.136344 eV Core-core repulsion = 28286.161252 eV Total energy + Delta-G solvation = -4386.975091 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.150 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -48.97420 -41.75753 -40.22700 -38.67204 -37.91134 -34.19231 -33.41557 -32.31005 -31.56724 -31.27490 -30.64755 -29.17181 -28.22503 -27.20366 -24.32436 -23.84444 -23.32924 -22.73130 -22.40565 -21.50214 -20.72378 -19.89304 -17.86217 -17.62198 -17.38346 -16.72853 -16.50843 -16.28674 -16.07593 -15.92393 -15.67323 -14.98777 -14.78811 -14.65505 -14.24398 -14.04077 -13.91962 -13.54189 -13.49723 -13.36305 -13.19739 -12.99292 -12.57478 -12.46221 -12.20195 -11.98841 -11.76207 -11.68320 -11.58968 -11.28513 -11.12577 -11.00886 -10.96801 -10.83442 -10.69962 -10.33228 -10.21712 -9.86149 -9.32391 -9.07800 -8.84584 -8.78737 -8.63536 -8.41927 -7.91119 -6.25719 -4.32873 0.96526 1.02756 1.08884 1.72059 2.88435 2.94399 3.23059 3.25212 3.26581 3.30749 3.50405 4.03903 4.14807 4.21494 4.28701 4.35198 4.43221 4.61915 4.63925 4.66231 4.71811 4.87884 4.98456 5.02737 5.09511 5.12826 5.13054 5.20418 5.27318 5.40339 5.49360 5.52055 5.59025 5.62222 5.65879 5.72257 5.87438 5.91595 5.99237 6.11227 6.20009 6.31471 6.41157 6.62398 6.76047 6.97912 7.01675 7.05859 7.24965 7.59762 7.76245 7.86060 8.11454 8.58760 8.70583 9.32305 10.82511 Molecular weight = 367.15amu Principal moments of inertia in cm(-1) A = 0.014513 B = 0.002492 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.903997 B =11232.015214 C =11618.305838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.061 0.939 9 C 0.264 3.736 10 N -0.331 5.331 11 N -0.235 5.235 12 C 0.073 3.927 13 C -0.294 4.294 14 C 0.351 3.649 15 N -0.532 5.532 16 C 0.349 3.651 17 N -0.595 5.595 18 C 0.429 3.571 19 N -0.461 5.461 20 C 0.049 3.951 21 C -0.140 4.140 22 C -0.122 4.122 23 C 0.110 3.890 24 H 0.109 0.891 25 C -0.035 4.035 26 C -0.114 4.114 27 C -0.095 4.095 28 C -0.159 4.159 29 C 0.091 3.909 30 F -0.143 7.143 31 C -0.127 4.127 32 H 0.269 0.731 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.187 0.813 36 H 0.196 0.804 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.130 0.870 44 H 0.131 0.869 45 H 0.130 0.870 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.516 -20.938 7.042 26.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.734 3.266 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.574 4.574 8 H 0.079 0.921 9 C 0.147 3.853 10 N -0.118 5.118 11 N -0.051 5.051 12 C -0.123 4.123 13 C -0.311 4.311 14 C 0.102 3.898 15 N -0.254 5.254 16 C 0.055 3.945 17 N -0.320 5.320 18 C 0.179 3.821 19 N -0.178 5.178 20 C -0.077 4.077 21 C -0.178 4.178 22 C -0.160 4.160 23 C 0.004 3.996 24 H 0.126 0.874 25 C -0.035 4.035 26 C -0.132 4.132 27 C -0.113 4.113 28 C -0.178 4.178 29 C 0.071 3.929 30 F -0.122 7.122 31 C -0.146 4.146 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.204 0.796 36 H 0.212 0.788 37 H 0.111 0.889 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.148 0.852 44 H 0.148 0.852 45 H 0.148 0.852 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 13.163 -20.161 6.525 24.946 hybrid contribution 0.817 0.755 0.019 1.113 sum 13.980 -19.406 6.544 24.797 Atomic orbital electron populations 1.69910 1.06015 1.27821 1.49047 1.24897 0.94988 0.99365 0.94368 0.86397 0.79454 0.81848 0.78864 1.19984 1.20829 1.19968 1.21186 0.93470 0.89648 1.53132 0.92119 1.19817 0.85650 0.79768 1.00074 1.49527 1.35761 1.27784 0.98706 1.76983 1.11016 1.07811 1.09297 1.23527 0.98849 0.97441 0.92438 1.19677 1.10021 1.05787 0.95583 1.19039 0.91615 0.90583 0.88543 1.67522 1.27831 1.29820 1.00197 1.24491 0.85979 0.84744 0.99303 1.68189 1.24438 1.23669 1.15677 1.19454 0.89999 0.84895 0.87716 1.60108 1.16900 1.21890 1.18949 1.22970 0.87275 1.00086 0.97341 1.22810 0.97109 0.98208 0.99658 1.22825 0.94388 0.98585 1.00165 1.21607 0.91617 0.92840 0.93576 0.87352 1.19407 0.96947 0.94636 0.92549 1.21073 0.99057 0.97174 0.95930 1.20942 0.97038 0.94332 0.98999 1.21124 1.03293 1.02076 0.91261 1.17736 0.98709 0.91279 0.85131 1.91494 1.86351 1.73174 1.61150 1.21000 0.98913 0.93388 1.01325 0.92137 0.92692 0.92264 0.79638 0.78758 0.88890 0.90926 0.89725 0.90772 0.89880 0.90149 0.85239 0.85153 0.85156 0.84346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.60 13.29 55.43 0.74 -24.87 16 2 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 3 Si 0.91 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.54 -15.13 9.39 -34.44 -0.32 -15.46 16 8 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 9 C 0.26 6.98 6.19 -5.19 -0.03 6.95 16 10 N -0.33 -7.85 3.63 -61.64 -0.22 -8.08 16 11 N -0.24 -5.01 12.45 30.80 0.38 -4.62 16 12 C 0.07 1.24 11.30 -17.11 -0.19 1.05 16 13 C -0.29 -5.30 5.43 -106.82 -0.58 -5.89 16 14 C 0.35 7.62 8.04 -156.23 -1.26 6.37 16 15 N -0.53 -10.98 10.47 -13.97 -0.15 -11.12 16 16 C 0.35 5.65 12.24 -92.12 -1.13 4.52 16 17 N -0.59 -8.97 8.33 -13.62 -0.11 -9.09 16 18 C 0.43 6.52 6.20 -154.85 -0.96 5.56 16 19 N -0.46 -5.35 4.15 -163.44 -0.68 -6.03 16 20 C 0.05 0.46 5.91 -2.84 -0.02 0.44 16 21 C -0.14 -0.98 6.94 -24.91 -0.17 -1.15 16 22 C -0.12 -0.86 6.47 -24.58 -0.16 -1.02 16 23 C 0.11 1.08 2.28 -67.32 -0.15 0.93 16 24 H 0.11 1.17 6.49 -51.93 -0.34 0.83 16 25 C -0.03 -0.35 5.03 -104.63 -0.53 -0.88 16 26 C -0.11 -1.04 9.68 -39.58 -0.38 -1.42 16 27 C -0.10 -0.81 10.04 -39.59 -0.40 -1.20 16 28 C -0.16 -1.51 10.03 -39.52 -0.40 -1.91 16 29 C 0.09 1.02 7.30 -39.42 -0.29 0.73 16 30 F -0.14 -1.75 17.27 2.25 0.04 -1.71 16 31 C -0.13 -1.41 9.15 -39.51 -0.36 -1.77 16 32 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 34 H 0.06 1.65 8.14 -51.93 -0.42 1.22 16 35 H 0.19 2.32 7.94 -52.48 -0.42 1.90 16 36 H 0.20 2.36 8.06 -52.49 -0.42 1.93 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.81 7.04 -51.92 -0.37 0.44 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.55 7.91 -51.92 -0.41 0.14 16 43 H 0.13 0.98 8.04 -52.49 -0.42 0.55 16 44 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 45 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 46 H 0.14 1.51 7.75 -52.49 -0.41 1.11 16 LS Contribution 391.83 15.07 5.90 5.90 Total: -1.00 -32.51 391.83 -12.25 -44.76 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -5.71 Total: 0.77 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -7.42 Total: -2.35 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: -0.04 Total: -63.81 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.51 -12.25 -44.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200009.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.038 kcal (2) G-P(sol) polarization free energy of solvation -32.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds