Wall clock time and date at job start Tue Mar 31 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99816 * 2 1 4 4 H 1.48508 * 109.46976 * 239.99848 * 3 2 1 5 5 H 1.48498 * 109.47270 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47193 * 120.00154 * 3 2 1 7 7 C 1.37871 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00218 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00193 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.47188 * 179.97438 * 9 7 2 11 11 N 1.40053 * 125.87187 * 269.99478 * 10 9 7 12 12 C 1.30252 * 109.69527 * 179.97438 * 11 10 9 13 13 C 1.41168 * 108.46953 * 359.77326 * 12 11 10 14 14 C 1.36312 * 125.87390 * 89.99643 * 10 9 7 15 15 N 1.33201 * 134.61455 * 0.02562 * 14 10 9 16 16 C 1.31508 * 120.68414 * 179.97438 * 15 14 10 17 17 N 1.32123 * 122.64333 * 0.02562 * 16 15 14 18 18 C 1.32867 * 121.19699 * 359.97438 * 17 16 15 19 19 N 1.38105 * 120.81466 * 179.97438 * 18 17 16 20 20 C 1.47441 * 111.00122 * 239.15679 * 19 18 17 21 21 C 1.54318 * 107.23407 * 123.25805 * 20 19 18 22 22 C 1.55138 * 103.01734 * 22.28314 * 21 20 19 23 23 C 1.47841 * 111.00016 * 0.02562 * 19 18 17 24 24 H 1.08997 * 110.37682 * 332.57686 * 23 19 18 25 25 C 1.50704 * 110.37541 * 94.80460 * 23 19 18 26 26 C 1.38265 * 119.99039 * 220.00247 * 25 23 19 27 27 C 1.38226 * 120.04947 * 180.30133 * 26 25 23 28 28 C 1.38221 * 120.02532 * 359.44039 * 27 26 25 29 29 C 1.38431 * 119.97356 * 0.55452 * 28 27 26 30 30 F 1.35104 * 120.02518 * 179.69710 * 29 28 27 31 31 C 1.38183 * 119.98486 * 40.02096 * 25 23 19 32 32 H 0.97002 * 119.99885 * 359.97438 * 1 2 3 33 33 H 1.08998 * 109.47455 * 59.99811 * 9 7 2 34 34 H 1.08996 * 109.47180 * 299.99526 * 9 7 2 35 35 H 1.08004 * 125.76673 * 179.97438 * 12 11 10 36 36 H 1.07994 * 118.68053 * 180.02562 * 16 15 14 37 37 H 1.08993 * 109.88916 * 242.66685 * 20 19 18 38 38 H 1.09009 * 109.88568 * 3.85465 * 20 19 18 39 39 H 1.08999 * 110.70753 * 140.66417 * 21 20 19 40 40 H 1.09002 * 110.70502 * 263.90672 * 21 20 19 41 41 H 1.08997 * 110.99650 * 206.25384 * 22 21 20 42 42 H 1.09008 * 110.99158 * 82.43497 * 22 21 20 43 43 H 1.08002 * 119.97048 * 0.02562 * 26 25 23 44 44 H 1.08000 * 119.98317 * 179.70412 * 27 26 25 45 45 H 1.08000 * 120.00673 * 180.27792 * 28 27 26 46 46 H 1.07995 * 120.01109 * 0.02562 * 31 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2031 -3.6127 -0.0027 11 7 2.7364 -4.2355 -1.1381 12 6 3.5497 -5.1863 -0.7761 13 6 3.5908 -5.2267 0.6344 14 6 2.7223 -4.2208 1.1013 15 7 2.5790 -4.0549 2.4152 16 6 3.2315 -4.8193 3.2632 17 7 4.0522 -5.7782 2.8725 18 6 4.2619 -6.0217 1.5833 19 7 5.1220 -7.0257 1.1837 20 6 6.2162 -6.4858 0.3561 21 6 7.5430 -6.8834 1.0365 22 6 7.1398 -8.1074 1.9001 23 6 5.7105 -7.7152 2.3516 24 1 5.7527 -7.0422 3.2080 25 6 4.9108 -8.9463 2.6920 26 6 4.6710 -9.2709 4.0145 27 6 3.9429 -10.4032 4.3282 28 6 3.4440 -11.2061 3.3198 29 6 3.6834 -10.8821 1.9954 30 9 3.2014 -11.6695 1.0090 31 6 4.4178 -9.7506 1.6823 32 1 -0.4850 0.8401 0.0004 33 1 0.6247 -2.5563 -0.8919 34 1 0.6242 -2.5575 0.8880 35 1 4.1021 -5.8323 -1.4425 36 1 3.0909 -4.6569 4.3216 37 1 6.1700 -6.9141 -0.6451 38 1 6.1385 -5.3999 0.3012 39 1 8.2882 -7.1653 0.2927 40 1 7.9118 -6.0729 1.6652 41 1 7.8040 -8.2164 2.7574 42 1 7.1237 -9.0188 1.3024 43 1 5.0566 -8.6415 4.8030 44 1 3.7603 -10.6583 5.3617 45 1 2.8714 -12.0883 3.5652 46 1 4.6059 -9.4973 0.6495 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097200009.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:47 Heat of formation + Delta-G solvation = 95.670779 kcal Electronic energy + Delta-G solvation = -32673.856314 eV Core-core repulsion = 28286.161252 eV Total energy + Delta-G solvation = -4387.695062 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.150 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.84522 -43.10779 -41.20716 -39.75446 -38.94754 -35.89062 -34.92028 -33.34141 -33.08650 -32.40471 -31.39907 -30.41448 -29.32859 -28.75871 -25.59280 -25.49590 -24.41559 -23.87725 -23.34638 -22.34949 -21.70901 -21.15018 -19.09054 -18.90967 -18.73989 -18.36357 -17.83621 -17.05063 -16.93112 -16.91146 -16.64168 -16.54664 -16.29491 -15.76399 -15.54516 -15.07096 -14.89242 -14.83095 -14.63672 -14.35689 -14.13848 -14.01113 -13.91330 -13.67317 -13.43395 -13.22387 -13.06006 -12.77415 -12.69566 -12.55613 -12.43832 -12.36409 -12.23882 -12.07332 -11.82510 -11.69144 -11.65611 -11.54448 -10.78262 -10.55657 -10.21092 -9.87372 -9.80877 -9.55764 -9.36573 -8.38085 -6.55572 -0.31035 0.24683 0.30088 0.34621 1.27998 1.34813 1.36358 1.46333 1.52074 2.26162 2.30032 2.70698 2.82460 2.91743 3.10857 3.26230 3.30379 3.53104 3.54806 3.71143 3.78516 3.95695 3.97852 4.02462 4.08474 4.21573 4.32494 4.37064 4.43977 4.56443 4.60546 4.70863 4.78213 4.81087 4.90624 4.97276 4.97580 5.07118 5.13030 5.19590 5.24959 5.31801 5.36924 5.41939 5.43899 5.49145 5.63214 5.73910 5.80613 5.93741 6.02563 6.18070 6.49426 6.59557 7.13709 7.24791 8.69780 Molecular weight = 367.15amu Principal moments of inertia in cm(-1) A = 0.014513 B = 0.002492 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.903997 B =11232.015214 C =11618.305838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.020 3.980 3 Si 0.976 3.024 4 H -0.268 1.268 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.554 4.554 8 H 0.048 0.952 9 C 0.285 3.715 10 N -0.365 5.365 11 N -0.280 5.280 12 C 0.103 3.897 13 C -0.306 4.306 14 C 0.327 3.673 15 N -0.582 5.582 16 C 0.359 3.641 17 N -0.585 5.585 18 C 0.444 3.556 19 N -0.458 5.458 20 C 0.042 3.958 21 C -0.131 4.131 22 C -0.112 4.112 23 C 0.109 3.891 24 H 0.103 0.897 25 C -0.044 4.044 26 C -0.116 4.116 27 C -0.091 4.091 28 C -0.163 4.163 29 C 0.066 3.934 30 F -0.155 7.155 31 C -0.139 4.139 32 H 0.275 0.725 33 H 0.031 0.969 34 H 0.032 0.968 35 H 0.233 0.767 36 H 0.234 0.766 37 H 0.114 0.886 38 H 0.054 0.946 39 H 0.108 0.892 40 H 0.072 0.928 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.148 0.852 44 H 0.159 0.841 45 H 0.145 0.855 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.505 -22.288 8.393 29.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.181 4.181 3 Si 0.799 3.201 4 H -0.193 1.193 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.592 4.592 8 H 0.066 0.934 9 C 0.166 3.834 10 N -0.151 5.151 11 N -0.095 5.095 12 C -0.092 4.092 13 C -0.322 4.322 14 C 0.079 3.921 15 N -0.306 5.306 16 C 0.067 3.933 17 N -0.310 5.310 18 C 0.194 3.806 19 N -0.175 5.175 20 C -0.082 4.082 21 C -0.169 4.169 22 C -0.150 4.150 23 C 0.003 3.997 24 H 0.121 0.879 25 C -0.045 4.045 26 C -0.134 4.134 27 C -0.109 4.109 28 C -0.181 4.181 29 C 0.047 3.953 30 F -0.134 7.134 31 C -0.158 4.158 32 H 0.084 0.916 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.249 0.751 36 H 0.249 0.751 37 H 0.132 0.868 38 H 0.073 0.927 39 H 0.127 0.873 40 H 0.091 0.909 41 H 0.120 0.880 42 H 0.104 0.896 43 H 0.166 0.834 44 H 0.177 0.823 45 H 0.163 0.837 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 16.191 -21.563 7.875 28.092 hybrid contribution -0.017 0.921 -0.287 0.964 sum 16.175 -20.643 7.589 27.301 Atomic orbital electron populations 1.70013 1.07457 1.29046 1.49249 1.25816 0.95905 1.02925 0.93465 0.85346 0.78332 0.77389 0.79050 1.19286 1.19399 1.19470 1.21343 0.92927 0.91030 1.53882 0.93416 1.19142 0.85901 0.80852 0.97467 1.49152 1.37148 1.28546 1.00300 1.76928 1.13498 1.09974 1.09091 1.24259 0.96451 0.95646 0.92840 1.19823 1.10245 1.05859 0.96286 1.19425 0.92362 0.91419 0.88848 1.67542 1.30397 1.32296 1.00357 1.25318 0.84201 0.83494 1.00322 1.68384 1.24051 1.23226 1.15369 1.19723 0.89570 0.84195 0.87149 1.60129 1.17410 1.20136 1.19831 1.23164 0.87656 0.99119 0.98304 1.22804 0.96065 0.98042 0.99991 1.22828 0.92603 0.98661 1.00937 1.21732 0.93132 0.92309 0.92576 0.87880 1.19522 0.97296 0.94711 0.92969 1.21371 0.98617 0.97513 0.95916 1.21299 0.95883 0.93573 1.00151 1.21403 1.03188 1.02785 0.90767 1.18033 0.99809 0.91782 0.85711 1.91457 1.86657 1.73538 1.61758 1.21022 0.99558 0.93774 1.01417 0.91640 0.95112 0.94981 0.75066 0.75061 0.86808 0.92717 0.87344 0.90885 0.87950 0.89618 0.83427 0.82291 0.83673 0.84833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.58 13.29 21.45 0.28 -54.30 16 2 C 0.02 1.13 5.46 84.65 0.46 1.59 16 3 Si 0.98 44.57 29.54 68.60 2.03 46.59 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.55 -32.79 9.39 25.60 0.24 -32.55 16 8 H 0.05 2.88 7.81 -2.91 -0.02 2.85 16 9 C 0.29 16.23 6.19 85.63 0.53 16.76 16 10 N -0.36 -18.32 3.63 -348.94 -1.27 -19.59 16 11 N -0.28 -12.37 12.45 -56.46 -0.70 -13.07 16 12 C 0.10 3.50 11.30 85.65 0.97 4.46 16 13 C -0.31 -11.01 5.43 -21.29 -0.12 -11.13 16 14 C 0.33 14.74 8.04 134.14 1.08 15.82 16 15 N -0.58 -24.71 10.47 -198.11 -2.07 -26.78 16 16 C 0.36 11.36 12.24 180.87 2.21 13.57 16 17 N -0.59 -16.74 8.33 -197.01 -1.64 -18.38 16 18 C 0.44 12.91 6.20 133.64 0.83 13.74 16 19 N -0.46 -9.59 4.15 -670.99 -2.78 -12.37 16 20 C 0.04 0.67 5.91 86.65 0.51 1.18 16 21 C -0.13 -1.35 6.94 31.77 0.22 -1.13 16 22 C -0.11 -1.17 6.47 31.99 0.21 -0.97 16 23 C 0.11 1.82 2.28 44.65 0.10 1.92 16 24 H 0.10 1.90 6.49 -2.39 -0.02 1.89 16 25 C -0.04 -0.80 5.03 -19.87 -0.10 -0.90 16 26 C -0.12 -1.77 9.68 22.27 0.22 -1.55 16 27 C -0.09 -1.28 10.04 22.26 0.22 -1.05 16 28 C -0.16 -2.80 10.03 22.31 0.22 -2.58 16 29 C 0.07 1.42 7.30 22.37 0.16 1.58 16 30 F -0.16 -3.78 17.27 44.97 0.78 -3.00 16 31 C -0.14 -2.87 9.15 22.31 0.20 -2.67 16 32 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 33 H 0.03 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.03 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.23 5.23 7.94 -2.91 -0.02 5.21 16 36 H 0.23 5.18 8.06 -2.91 -0.02 5.15 16 37 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.05 1.11 7.04 -2.38 -0.02 1.09 16 39 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.09 0.86 7.91 -2.38 -0.02 0.84 16 43 H 0.15 1.68 8.04 -2.91 -0.02 1.66 16 44 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 45 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 46 H 0.13 2.78 7.75 -2.91 -0.02 2.75 16 Total: -1.00 -75.78 391.83 3.82 -71.97 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 1.02 Total: 12.82 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: 8.18 Total: 16.11 kcal Atomic # 7 Polarization: -136.31 SS G_CDS: -8.18 Total: -144.49 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.78 Total: -3.00 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -75.78 3.82 -71.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200009.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.636 kcal (2) G-P(sol) polarization free energy of solvation -75.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds