Wall clock time and date at job start Tue Mar 31 2020 05:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34771 * 120.00235 * 2 1 4 4 O 1.21557 * 120.00040 * 0.02562 * 3 2 1 5 5 C 1.47845 * 120.00437 * 179.97438 * 3 2 1 6 6 C 1.39576 * 120.14298 * 0.29770 * 5 3 2 7 7 C 1.37957 * 119.85528 * 180.21013 * 6 5 3 8 8 C 1.38360 * 120.14382 * 359.51406 * 7 6 5 9 9 C 1.50694 * 119.85722 * 180.25691 * 8 7 6 10 10 N 1.46500 * 109.47438 * 90.00064 * 9 8 7 11 11 C 1.38104 * 120.00491 * 180.02562 * 10 9 8 12 12 N 1.32860 * 120.81127 * 359.71833 * 11 10 9 13 13 C 1.32128 * 121.19176 * 179.70037 * 12 11 10 14 14 N 1.31502 * 122.64722 * 0.63658 * 13 12 11 15 15 C 1.33200 * 120.68380 * 359.66486 * 14 13 12 16 16 C 1.40812 * 120.81494 * 180.02562 * 11 10 9 17 17 C 1.41171 * 134.70248 * 0.02562 * 16 11 10 18 18 N 1.30249 * 108.47107 * 179.97438 * 17 16 11 19 19 N 1.36312 * 134.61873 * 179.97438 * 15 14 13 20 20 C 1.46506 * 125.86734 * 0.02562 * 19 15 14 21 21 C 1.50695 * 109.47031 * 90.00077 * 20 19 15 22 22 H 1.07994 * 120.00248 * 359.97438 * 21 20 19 23 23 C 1.37881 * 119.99707 * 180.02562 * 21 20 19 24 24 N 1.31505 * 120.00253 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99726 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46941 * 89.99629 * 25 23 21 27 27 H 1.48500 * 109.46734 * 209.99655 * 25 23 21 28 28 H 1.48496 * 109.47233 * 329.99381 * 25 23 21 29 29 C 1.38365 * 120.29337 * 0.23650 * 8 7 6 30 30 C 1.37955 * 120.14101 * 359.97438 * 29 8 7 31 31 H 1.08998 * 109.47295 * 300.00129 * 1 2 3 32 32 H 1.09003 * 109.46891 * 60.00262 * 1 2 3 33 33 H 1.09001 * 109.47067 * 179.97438 * 1 2 3 34 34 H 0.97006 * 120.00213 * 180.02562 * 2 1 3 35 35 H 1.08004 * 120.07581 * 359.97438 * 6 5 3 36 36 H 1.08002 * 119.93252 * 179.79862 * 7 6 5 37 37 H 1.09002 * 109.47542 * 209.99835 * 9 8 7 38 38 H 1.09005 * 109.47256 * 330.00494 * 9 8 7 39 39 H 0.97004 * 119.99943 * 0.02562 * 10 9 8 40 40 H 1.08002 * 118.67374 * 180.28124 * 13 12 11 41 41 H 1.08002 * 125.76456 * 359.96628 * 17 16 11 42 42 H 1.08998 * 109.46479 * 209.99518 * 20 19 15 43 43 H 1.08997 * 109.47297 * 329.99188 * 20 19 15 44 44 H 0.97002 * 120.00192 * 180.02562 * 24 23 21 45 45 H 1.07997 * 119.93230 * 180.02562 * 29 8 7 46 46 H 1.08003 * 120.07552 * 180.02562 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 1.5311 2.2199 0.0005 5 6 3.6173 1.1672 0.0006 6 6 4.3182 -0.0398 -0.0052 7 6 5.6978 -0.0328 -0.0002 8 6 6.3865 1.1671 0.0003 9 6 7.8935 1.1672 -0.0002 10 7 8.3815 1.1680 -1.3815 11 6 9.7392 1.1676 -1.6343 12 7 10.6171 1.1722 -0.6370 13 6 11.9176 1.1660 -0.8702 14 7 12.4205 1.1674 -2.0853 15 6 11.6220 1.1686 -3.1514 16 6 10.2270 1.1690 -2.9552 17 6 9.6297 1.1712 -4.2343 18 7 10.5745 1.1721 -5.1309 19 7 11.8246 1.1705 -4.4994 20 6 13.1262 1.1715 -5.1718 21 6 13.5724 -0.2490 -5.4044 22 1 12.9491 -1.0703 -5.0832 23 6 14.7770 -0.5001 -6.0265 24 7 15.5364 0.5000 -6.4172 25 14 15.3305 -2.2609 -6.3142 26 1 14.8349 -2.7260 -7.6345 27 1 16.8140 -2.3233 -6.2923 28 1 14.7826 -3.1331 -5.2445 29 6 5.6978 2.3672 0.0007 30 6 4.3183 2.3742 0.0002 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.9500 -0.8401 -0.0004 35 1 3.7818 -0.9772 -0.0096 36 1 6.2414 -0.9661 -0.0013 37 1 8.2570 2.0569 0.5140 38 1 8.2570 0.2768 0.5130 39 1 7.7510 1.1688 -2.1186 40 1 12.5949 1.1654 -0.0290 41 1 8.5686 1.1719 -4.4355 42 1 13.0405 1.6866 -6.1285 43 1 13.8575 1.6844 -4.5472 44 1 16.3837 0.3234 -6.8551 45 1 6.2413 3.3004 0.0007 46 1 3.7818 3.3115 0.0001 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200077.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:30 Heat of formation + Delta-G solvation = 109.815928 kcal Electronic energy + Delta-G solvation = -30376.891873 eV Core-core repulsion = 26075.156064 eV Total energy + Delta-G solvation = -4301.735809 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.155 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.40521 -40.69982 -39.16549 -38.38931 -36.33304 -35.20812 -33.83168 -32.97510 -31.64534 -31.47861 -31.27241 -29.62668 -27.85226 -27.22155 -25.94026 -23.96316 -23.47670 -23.13535 -22.75022 -22.04160 -20.80974 -20.13187 -18.80497 -18.02548 -17.41909 -16.75814 -16.67144 -16.52863 -15.79121 -15.71324 -15.51649 -15.42170 -15.04315 -14.91383 -14.55548 -14.19874 -14.08262 -13.79565 -13.77563 -13.62942 -13.56455 -13.32240 -12.86658 -12.79845 -12.74137 -12.16175 -11.96673 -11.65566 -11.60525 -11.20129 -10.99853 -10.97943 -10.77052 -10.48580 -10.29221 -10.10994 -9.84541 -9.74694 -9.50084 -9.38492 -9.28681 -8.68792 -8.60114 -8.24068 -7.66482 -6.22366 -4.28898 0.24577 0.87179 1.28817 1.92059 2.29774 2.65331 2.94104 3.02953 3.11459 3.23859 3.29479 3.35300 3.47186 4.06138 4.23236 4.30027 4.30848 4.38421 4.45604 4.60519 4.69307 4.73273 4.83155 4.87694 4.95275 4.98458 5.12885 5.15321 5.18871 5.27079 5.30622 5.44108 5.52438 5.59527 5.69960 5.73041 5.80265 5.84341 6.06497 6.28553 6.34892 6.65649 6.86732 6.90352 7.02565 7.09631 7.20447 7.47982 7.67313 7.71066 7.89059 7.91171 8.21622 8.70989 8.81046 9.36122 10.85865 Molecular weight = 366.15amu Principal moments of inertia in cm(-1) A = 0.017774 B = 0.001621 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.942624 B =17265.581339 C =17799.935910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.732 5.732 3 C 0.557 3.443 4 O -0.535 6.535 5 C -0.133 4.133 6 C -0.089 4.089 7 C -0.106 4.106 8 C -0.080 4.080 9 C 0.169 3.831 10 N -0.704 5.704 11 C 0.509 3.491 12 N -0.618 5.618 13 C 0.367 3.633 14 N -0.553 5.553 15 C 0.363 3.637 16 C -0.337 4.337 17 C 0.068 3.932 18 N -0.243 5.243 19 N -0.332 5.332 20 C 0.263 3.737 21 C -0.534 4.534 22 H 0.061 0.939 23 C 0.067 3.933 24 N -0.891 5.891 25 Si 0.907 3.093 26 H -0.278 1.278 27 H -0.282 1.282 28 H -0.273 1.273 29 C -0.105 4.105 30 C -0.060 4.060 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.402 0.598 35 H 0.127 0.873 36 H 0.133 0.867 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.410 0.590 40 H 0.195 0.805 41 H 0.182 0.818 42 H 0.054 0.946 43 H 0.060 0.940 44 H 0.268 0.732 45 H 0.134 0.866 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.160 -1.066 16.342 30.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.385 5.385 3 C 0.345 3.655 4 O -0.412 6.412 5 C -0.136 4.136 6 C -0.107 4.107 7 C -0.124 4.124 8 C -0.080 4.080 9 C 0.046 3.954 10 N -0.338 5.338 11 C 0.257 3.743 12 N -0.349 5.349 13 C 0.073 3.927 14 N -0.278 5.278 15 C 0.115 3.885 16 C -0.355 4.355 17 C -0.127 4.127 18 N -0.058 5.058 19 N -0.118 5.118 20 C 0.147 3.853 21 C -0.573 4.573 22 H 0.079 0.921 23 C -0.136 4.136 24 N -0.529 5.529 25 Si 0.734 3.266 26 H -0.204 1.204 27 H -0.208 1.208 28 H -0.198 1.198 29 C -0.124 4.124 30 C -0.079 4.079 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.237 0.763 35 H 0.145 0.855 36 H 0.151 0.849 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.247 0.753 40 H 0.212 0.788 41 H 0.199 0.801 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.152 0.848 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -25.348 -0.250 15.671 29.802 hybrid contribution -0.358 -1.479 -0.352 1.561 sum -25.706 -1.728 15.319 29.974 Atomic orbital electron populations 1.21578 0.79026 1.02490 1.02610 1.45719 1.08044 1.08658 1.76031 1.18362 0.87353 0.83747 0.76032 1.90791 1.69963 1.31150 1.49320 1.19942 0.92512 0.94717 1.06417 1.21265 0.94525 0.96806 0.98137 1.21096 0.93753 0.98170 0.99395 1.20229 0.95641 0.93407 0.98758 1.20201 0.87724 1.03828 0.83646 1.44278 1.02497 1.79281 1.07757 1.17869 0.85176 0.84437 0.86830 1.67937 1.03891 1.29590 1.33498 1.24413 0.88145 0.87739 0.92416 1.67515 1.39443 1.23465 0.97366 1.18939 0.88652 0.93365 0.87509 1.19608 0.96052 1.25567 0.94243 1.23368 0.99196 1.01461 0.88654 1.76945 0.88882 1.18161 1.21860 1.49470 1.06778 1.55233 1.00323 1.19799 0.72774 0.99193 0.93570 1.21244 1.04851 0.91144 1.40021 0.92051 1.24894 0.95796 0.98121 0.94838 1.69913 1.12503 1.30971 1.39471 0.86342 0.77808 0.83726 0.78702 1.20361 1.20788 1.19773 1.21175 0.93763 0.98186 0.99249 1.21295 0.93837 0.97781 0.95021 0.91989 0.91960 0.90407 0.76286 0.85538 0.84866 0.90188 0.90218 0.75316 0.78822 0.80121 0.92804 0.92229 0.92254 0.84764 0.84425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.37 10.70 59.84 0.64 1.01 16 2 N -0.73 -3.93 5.66 -68.05 -0.39 -4.32 16 3 C 0.56 4.86 7.77 -12.33 -0.10 4.76 16 4 O -0.53 -6.67 16.35 5.32 0.09 -6.58 16 5 C -0.13 -0.99 5.87 -104.97 -0.62 -1.61 16 6 C -0.09 -0.48 9.54 -39.19 -0.37 -0.85 16 7 C -0.11 -0.62 9.68 -39.64 -0.38 -1.00 16 8 C -0.08 -0.54 5.25 -104.53 -0.55 -1.08 16 9 C 0.17 1.36 5.85 -5.20 -0.03 1.33 16 10 N -0.70 -7.12 5.67 -61.26 -0.35 -7.46 16 11 C 0.51 7.45 7.55 -154.86 -1.17 6.28 16 12 N -0.62 -9.33 9.69 -13.62 -0.13 -9.46 16 13 C 0.37 5.96 12.24 -92.12 -1.13 4.83 16 14 N -0.55 -11.46 10.47 -13.97 -0.15 -11.61 16 15 C 0.36 7.90 8.04 -156.23 -1.26 6.65 16 16 C -0.34 -5.96 6.14 -106.81 -0.66 -6.61 16 17 C 0.07 1.14 11.87 -17.11 -0.20 0.93 16 18 N -0.24 -5.15 12.45 30.80 0.38 -4.76 16 19 N -0.33 -7.89 3.63 -61.64 -0.22 -8.11 16 20 C 0.26 7.01 6.19 -5.19 -0.03 6.98 16 21 C -0.53 -15.20 9.39 -34.44 -0.32 -15.53 16 22 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 23 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 24 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 25 Si 0.91 21.61 29.54 -169.99 -5.02 16.59 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 29 C -0.11 -0.72 9.68 -39.64 -0.38 -1.10 16 30 C -0.06 -0.47 9.60 -39.18 -0.38 -0.84 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 34 H 0.40 1.01 6.86 -40.82 -0.28 0.73 16 35 H 0.13 0.32 6.41 -52.48 -0.34 -0.01 16 36 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 37 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 38 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 39 H 0.41 3.48 8.33 -40.82 -0.34 3.14 16 40 H 0.20 2.36 8.06 -52.49 -0.42 1.93 16 41 H 0.18 2.05 8.06 -52.49 -0.42 1.63 16 42 H 0.05 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.06 1.66 8.14 -51.93 -0.42 1.24 16 44 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 46 H 0.14 1.09 7.65 -52.48 -0.40 0.69 16 LS Contribution 403.38 15.07 6.08 6.08 Total: -1.00 -36.25 403.38 -11.55 -47.80 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -5.55 Total: 0.88 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: -7.03 Total: 5.91 kcal Atomic # 7 Polarization: -70.56 SS G_CDS: -0.12 Total: -70.67 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: 0.09 Total: -6.58 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.25 -11.55 -47.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200077.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.615 kcal (2) G-P(sol) polarization free energy of solvation -36.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds