Wall clock time and date at job start Tue Mar 31 2020 05:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34771 * 120.00235 * 2 1 4 4 O 1.21557 * 120.00040 * 0.02562 * 3 2 1 5 5 C 1.47845 * 120.00437 * 179.97438 * 3 2 1 6 6 C 1.39576 * 120.14298 * 0.29770 * 5 3 2 7 7 C 1.37957 * 119.85528 * 180.21013 * 6 5 3 8 8 C 1.38360 * 120.14382 * 359.51406 * 7 6 5 9 9 C 1.50694 * 119.85722 * 180.25691 * 8 7 6 10 10 N 1.46500 * 109.47438 * 90.00064 * 9 8 7 11 11 C 1.38104 * 120.00491 * 180.02562 * 10 9 8 12 12 N 1.32860 * 120.81127 * 359.71833 * 11 10 9 13 13 C 1.32128 * 121.19176 * 179.70037 * 12 11 10 14 14 N 1.31502 * 122.64722 * 0.63658 * 13 12 11 15 15 C 1.33200 * 120.68380 * 359.66486 * 14 13 12 16 16 C 1.40812 * 120.81494 * 180.02562 * 11 10 9 17 17 C 1.41171 * 134.70248 * 0.02562 * 16 11 10 18 18 N 1.30249 * 108.47107 * 179.97438 * 17 16 11 19 19 N 1.36312 * 134.61873 * 179.97438 * 15 14 13 20 20 C 1.46506 * 125.86734 * 0.02562 * 19 15 14 21 21 C 1.50695 * 109.47031 * 90.00077 * 20 19 15 22 22 H 1.07994 * 120.00248 * 359.97438 * 21 20 19 23 23 C 1.37881 * 119.99707 * 180.02562 * 21 20 19 24 24 N 1.31505 * 120.00253 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99726 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46941 * 89.99629 * 25 23 21 27 27 H 1.48500 * 109.46734 * 209.99655 * 25 23 21 28 28 H 1.48496 * 109.47233 * 329.99381 * 25 23 21 29 29 C 1.38365 * 120.29337 * 0.23650 * 8 7 6 30 30 C 1.37955 * 120.14101 * 359.97438 * 29 8 7 31 31 H 1.08998 * 109.47295 * 300.00129 * 1 2 3 32 32 H 1.09003 * 109.46891 * 60.00262 * 1 2 3 33 33 H 1.09001 * 109.47067 * 179.97438 * 1 2 3 34 34 H 0.97006 * 120.00213 * 180.02562 * 2 1 3 35 35 H 1.08004 * 120.07581 * 359.97438 * 6 5 3 36 36 H 1.08002 * 119.93252 * 179.79862 * 7 6 5 37 37 H 1.09002 * 109.47542 * 209.99835 * 9 8 7 38 38 H 1.09005 * 109.47256 * 330.00494 * 9 8 7 39 39 H 0.97004 * 119.99943 * 0.02562 * 10 9 8 40 40 H 1.08002 * 118.67374 * 180.28124 * 13 12 11 41 41 H 1.08002 * 125.76456 * 359.96628 * 17 16 11 42 42 H 1.08998 * 109.46479 * 209.99518 * 20 19 15 43 43 H 1.08997 * 109.47297 * 329.99188 * 20 19 15 44 44 H 0.97002 * 120.00192 * 180.02562 * 24 23 21 45 45 H 1.07997 * 119.93230 * 180.02562 * 29 8 7 46 46 H 1.08003 * 120.07552 * 180.02562 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 1.5311 2.2199 0.0005 5 6 3.6173 1.1672 0.0006 6 6 4.3182 -0.0398 -0.0052 7 6 5.6978 -0.0328 -0.0002 8 6 6.3865 1.1671 0.0003 9 6 7.8935 1.1672 -0.0002 10 7 8.3815 1.1680 -1.3815 11 6 9.7392 1.1676 -1.6343 12 7 10.6171 1.1722 -0.6370 13 6 11.9176 1.1660 -0.8702 14 7 12.4205 1.1674 -2.0853 15 6 11.6220 1.1686 -3.1514 16 6 10.2270 1.1690 -2.9552 17 6 9.6297 1.1712 -4.2343 18 7 10.5745 1.1721 -5.1309 19 7 11.8246 1.1705 -4.4994 20 6 13.1262 1.1715 -5.1718 21 6 13.5724 -0.2490 -5.4044 22 1 12.9491 -1.0703 -5.0832 23 6 14.7770 -0.5001 -6.0265 24 7 15.5364 0.5000 -6.4172 25 14 15.3305 -2.2609 -6.3142 26 1 14.8349 -2.7260 -7.6345 27 1 16.8140 -2.3233 -6.2923 28 1 14.7826 -3.1331 -5.2445 29 6 5.6978 2.3672 0.0007 30 6 4.3183 2.3742 0.0002 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.9500 -0.8401 -0.0004 35 1 3.7818 -0.9772 -0.0096 36 1 6.2414 -0.9661 -0.0013 37 1 8.2570 2.0569 0.5140 38 1 8.2570 0.2768 0.5130 39 1 7.7510 1.1688 -2.1186 40 1 12.5949 1.1654 -0.0290 41 1 8.5686 1.1719 -4.4355 42 1 13.0405 1.6866 -6.1285 43 1 13.8575 1.6844 -4.5472 44 1 16.3837 0.3234 -6.8551 45 1 6.2413 3.3004 0.0007 46 1 3.7818 3.3115 0.0001 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097200077.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:28 Heat of formation + Delta-G solvation = 85.625688 kcal Electronic energy + Delta-G solvation = -30377.940840 eV Core-core repulsion = 26075.156064 eV Total energy + Delta-G solvation = -4302.784777 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.155 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.79816 -41.28152 -39.99908 -39.50924 -37.34894 -35.79035 -35.72404 -34.16934 -33.09945 -32.53111 -31.98104 -30.77476 -29.21847 -28.36178 -26.66862 -25.49330 -25.01095 -23.90858 -23.56640 -23.01887 -21.57125 -21.37404 -19.45813 -19.25553 -18.80163 -18.64331 -17.76654 -17.30755 -16.98462 -16.68646 -16.34759 -16.30059 -15.99177 -15.88756 -15.57152 -15.35046 -15.06698 -15.01909 -14.89313 -14.56006 -14.30655 -14.15366 -14.08338 -13.75195 -13.67107 -13.33419 -13.12139 -13.03262 -12.74953 -12.56350 -12.43768 -12.35377 -12.28596 -12.00546 -11.77188 -11.49648 -11.16211 -10.75211 -10.60185 -10.31961 -10.09908 -9.97493 -9.82613 -9.75380 -8.97777 -8.34702 -6.51865 -0.31045 -0.01183 0.39449 0.54923 1.33555 1.36837 1.40779 1.50562 1.64880 1.66883 2.17873 2.19302 2.32423 2.87592 2.95053 3.03781 3.28038 3.42262 3.54351 3.68897 3.79071 3.82398 3.86558 3.99542 4.11974 4.29737 4.37842 4.44256 4.46592 4.60781 4.68541 4.72537 4.84051 4.86373 4.88895 4.94278 5.05743 5.16067 5.23349 5.33827 5.35415 5.48432 5.54074 5.55976 5.75590 5.78807 5.85090 5.97353 6.13403 6.46287 6.53521 6.59008 6.79666 7.13711 7.17738 7.47632 8.72911 Molecular weight = 366.15amu Principal moments of inertia in cm(-1) A = 0.017774 B = 0.001621 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.942624 B =17265.581339 C =17799.935910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.717 5.717 3 C 0.550 3.450 4 O -0.584 6.584 5 C -0.143 4.143 6 C -0.078 4.078 7 C -0.102 4.102 8 C -0.079 4.079 9 C 0.171 3.829 10 N -0.679 5.679 11 C 0.520 3.480 12 N -0.612 5.612 13 C 0.377 3.623 14 N -0.606 5.606 15 C 0.337 3.663 16 C -0.345 4.345 17 C 0.100 3.900 18 N -0.291 5.291 19 N -0.367 5.367 20 C 0.285 3.715 21 C -0.553 4.553 22 H 0.046 0.954 23 C 0.020 3.980 24 N -0.919 5.919 25 Si 0.976 3.024 26 H -0.267 1.267 27 H -0.270 1.270 28 H -0.273 1.273 29 C -0.105 4.105 30 C -0.076 4.076 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.114 0.886 34 H 0.418 0.582 35 H 0.159 0.841 36 H 0.152 0.848 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.422 0.578 40 H 0.231 0.769 41 H 0.238 0.762 42 H 0.030 0.970 43 H 0.032 0.968 44 H 0.274 0.726 45 H 0.141 0.859 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.151 -3.549 17.951 33.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.370 5.370 3 C 0.339 3.661 4 O -0.466 6.466 5 C -0.146 4.146 6 C -0.097 4.097 7 C -0.121 4.121 8 C -0.080 4.080 9 C 0.049 3.951 10 N -0.312 5.312 11 C 0.266 3.734 12 N -0.343 5.343 13 C 0.084 3.916 14 N -0.333 5.333 15 C 0.090 3.910 16 C -0.363 4.363 17 C -0.095 4.095 18 N -0.106 5.106 19 N -0.153 5.153 20 C 0.166 3.834 21 C -0.591 4.591 22 H 0.065 0.935 23 C -0.181 4.181 24 N -0.558 5.558 25 Si 0.799 3.201 26 H -0.192 1.192 27 H -0.194 1.194 28 H -0.197 1.197 29 C -0.123 4.123 30 C -0.095 4.095 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.132 0.868 34 H 0.256 0.744 35 H 0.176 0.824 36 H 0.170 0.830 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.260 0.740 40 H 0.247 0.753 41 H 0.254 0.746 42 H 0.048 0.952 43 H 0.050 0.950 44 H 0.083 0.917 45 H 0.159 0.841 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -27.424 -2.766 17.310 32.548 hybrid contribution 0.029 -0.679 -0.635 0.930 sum -27.395 -3.445 16.676 32.256 Atomic orbital electron populations 1.21722 0.78333 1.04530 1.01587 1.45679 1.08614 1.08453 1.74205 1.18677 0.88008 0.83906 0.75555 1.90765 1.70913 1.32957 1.51916 1.19997 0.91958 0.95540 1.07102 1.21541 0.94519 0.97161 0.96471 1.21330 0.93948 0.98464 0.98330 1.20090 0.94655 0.93759 0.99493 1.20305 0.88556 1.04241 0.82026 1.44403 1.00760 1.76500 1.09503 1.17946 0.86813 0.83101 0.85573 1.68100 1.03459 1.29832 1.32935 1.25186 0.89276 0.85115 0.91992 1.67527 1.40848 1.26493 0.98433 1.19364 0.90905 0.93760 0.86975 1.19742 0.94402 1.26345 0.95843 1.24249 1.00721 0.97064 0.87437 1.76892 0.88662 1.21670 1.23407 1.49093 1.06565 1.58305 1.01384 1.19108 0.74499 0.97773 0.92037 1.21394 1.05368 0.91578 1.40737 0.93521 1.25803 0.95558 1.02630 0.94133 1.70012 1.12914 1.33152 1.39692 0.85293 0.77837 0.78172 0.78770 1.19245 1.19437 1.19749 1.21216 0.93336 0.98759 0.99027 1.21306 0.94344 0.97770 0.96091 0.92976 0.93111 0.86799 0.74396 0.82376 0.83027 0.90034 0.89537 0.73975 0.75314 0.74643 0.95217 0.94973 0.91714 0.84110 0.85653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.57 10.70 127.77 1.37 1.94 16 2 N -0.72 -6.17 5.66 -487.49 -2.76 -8.93 16 3 C 0.55 9.06 7.77 86.79 0.67 9.73 16 4 O -0.58 -14.88 16.35 -3.89 -0.06 -14.95 16 5 C -0.14 -1.87 5.87 -20.09 -0.12 -1.99 16 6 C -0.08 -0.56 9.54 22.53 0.21 -0.35 16 7 C -0.10 -0.77 9.68 22.23 0.22 -0.56 16 8 C -0.08 -0.79 5.25 -19.81 -0.10 -0.90 16 9 C 0.17 2.11 5.85 85.63 0.50 2.61 16 10 N -0.68 -11.16 5.67 -347.73 -1.97 -13.14 16 11 C 0.52 13.85 7.55 133.64 1.01 14.86 16 12 N -0.61 -16.99 9.69 -197.02 -1.91 -18.90 16 13 C 0.38 11.80 12.24 180.87 2.21 14.01 16 14 N -0.61 -25.58 10.47 -198.10 -2.07 -27.65 16 15 C 0.34 14.99 8.04 134.15 1.08 16.06 16 16 C -0.35 -11.80 6.14 -21.28 -0.13 -11.93 16 17 C 0.10 3.17 11.87 85.65 1.02 4.18 16 18 N -0.29 -12.58 12.45 -56.46 -0.70 -13.29 16 19 N -0.37 -18.29 3.63 -348.94 -1.27 -19.55 16 20 C 0.28 16.21 6.19 85.63 0.53 16.74 16 21 C -0.55 -32.88 9.39 25.60 0.24 -32.64 16 22 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 23 C 0.02 1.12 5.46 84.66 0.46 1.58 16 24 N -0.92 -54.58 13.29 21.45 0.28 -54.30 16 25 Si 0.98 44.79 29.54 68.60 2.03 46.81 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 27 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 28 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 29 C -0.10 -1.21 9.68 22.23 0.22 -0.99 16 30 C -0.08 -1.10 9.60 22.53 0.22 -0.89 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 34 H 0.42 0.66 6.86 -92.70 -0.64 0.02 16 35 H 0.16 0.05 6.41 -2.91 -0.02 0.03 16 36 H 0.15 0.65 8.06 -2.91 -0.02 0.63 16 37 H 0.08 1.08 8.08 -2.39 -0.02 1.06 16 38 H 0.09 1.06 8.08 -2.38 -0.02 1.05 16 39 H 0.42 5.28 8.33 -92.71 -0.77 4.51 16 40 H 0.23 5.11 8.06 -2.91 -0.02 5.09 16 41 H 0.24 4.36 8.06 -2.91 -0.02 4.34 16 42 H 0.03 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.03 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 45 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 46 H 0.13 2.07 7.65 -2.91 -0.02 2.05 16 Total: -1.00 -85.22 403.38 0.81 -84.41 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -0.35 Total: 8.02 kcal Atomic # 6 Polarization: 21.87 SS G_CDS: 9.60 Total: 31.48 kcal Atomic # 7 Polarization: -145.37 SS G_CDS: -10.40 Total: -155.77 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.06 Total: -14.95 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -85.22 0.81 -84.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200077.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.031 kcal (2) G-P(sol) polarization free energy of solvation -85.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds