Wall clock time and date at job start Tue Mar 31 2020 06:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.38123 * 120.51763 * 2 1 4 4 C 1.39166 * 120.24522 * 359.97438 * 3 2 1 5 5 C 1.37701 * 120.00911 * 180.02562 * 4 3 2 6 6 C 1.39137 * 120.48350 * 359.97438 * 5 4 3 7 7 F 1.35103 * 119.75677 * 179.97438 * 6 5 4 8 8 C 1.37559 * 120.47753 * 0.02562 * 6 5 4 9 9 C 1.40368 * 119.84789 * 0.02562 * 8 6 5 10 10 N 1.34676 * 120.04636 * 179.97438 * 9 8 6 11 11 C 1.30226 * 121.07269 * 180.02562 * 10 9 8 12 12 C 1.50697 * 119.88358 * 179.97438 * 11 10 9 13 13 N 1.46501 * 109.47295 * 0.02562 * 12 11 10 14 14 C 1.36939 * 119.99838 * 270.00181 * 13 12 11 15 15 H 1.08003 * 119.99899 * 187.73018 * 14 13 12 16 16 C 1.38807 * 120.00139 * 7.72224 * 14 13 12 17 17 N 1.31618 * 120.00177 * 25.45200 * 16 14 13 18 18 Si 1.86807 * 120.00173 * 205.44894 * 16 14 13 19 19 H 1.48496 * 109.46611 * 90.00100 * 18 16 14 20 20 H 1.48502 * 109.46988 * 210.00080 * 18 16 14 21 21 H 1.48494 * 109.47006 * 330.00450 * 18 16 14 22 22 C 1.46492 * 119.99998 * 89.99600 * 13 12 11 23 23 C 1.50704 * 109.47289 * 89.02556 * 22 13 12 24 24 C 1.38240 * 119.99980 * 90.10805 * 23 22 13 25 25 C 1.38229 * 120.00100 * 179.97438 * 24 23 22 26 26 C 1.38236 * 120.00048 * 0.09662 * 25 24 23 27 27 C 1.38235 * 119.99735 * 359.86066 * 26 25 24 28 28 C 1.38232 * 120.00381 * 0.08989 * 27 26 25 29 29 C 1.35097 * 120.51587 * 180.23645 * 2 1 3 30 30 O 1.21778 * 120.40414 * 0.02562 * 29 2 1 31 31 H 1.09000 * 109.47490 * 89.99631 * 1 2 3 32 32 H 1.09001 * 109.47293 * 209.99713 * 1 2 3 33 33 H 1.09002 * 109.46984 * 330.00293 * 1 2 3 34 34 H 1.08005 * 119.99983 * 0.02562 * 4 3 2 35 35 H 1.08000 * 119.75676 * 180.02562 * 5 4 3 36 36 H 1.08009 * 120.07635 * 180.02562 * 8 6 5 37 37 H 1.08999 * 109.47416 * 240.00358 * 12 11 10 38 38 H 1.09004 * 109.46987 * 120.00203 * 12 11 10 39 39 H 0.96994 * 120.00268 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.47421 * 329.02697 * 22 13 12 41 41 H 1.09008 * 109.47631 * 209.02419 * 22 13 12 42 42 H 1.08005 * 119.99519 * 359.70747 * 24 23 22 43 43 H 1.07999 * 120.00074 * 179.97438 * 25 24 23 44 44 H 1.07998 * 120.00015 * 179.97438 * 26 25 24 45 45 H 1.08004 * 119.99674 * 180.02562 * 27 26 25 46 46 H 1.07999 * 120.00251 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1664 1.1899 0.0000 4 6 1.4866 2.4043 -0.0005 5 6 2.1908 3.5876 -0.0011 6 6 3.5821 3.5811 -0.0005 7 9 4.2582 4.7508 -0.0016 8 6 4.2742 2.3923 0.0000 9 6 3.5736 1.1760 -0.0005 10 7 4.2471 0.0098 -0.0005 11 6 3.6174 -1.1301 -0.0015 12 6 4.3980 -2.4192 -0.0021 13 7 5.8325 -2.1215 -0.0007 14 6 6.5037 -1.9812 -1.1860 15 1 7.5796 -1.8864 -1.1894 16 6 5.8015 -1.9611 -2.3832 17 7 4.5425 -1.5778 -2.4013 18 14 6.6433 -2.4779 -3.9687 19 1 6.4606 -3.9374 -4.1730 20 1 6.0454 -1.7396 -5.1100 21 1 8.0930 -2.1677 -3.8833 22 6 6.5486 -1.9737 1.2686 23 6 7.0625 -3.3182 1.7151 24 6 8.3186 -3.7427 1.3241 25 6 8.7902 -4.9758 1.7340 26 6 8.0048 -5.7852 2.5333 27 6 6.7490 -5.3604 2.9249 28 6 6.2778 -4.1269 2.5159 29 6 2.1510 -1.1638 -0.0048 30 8 1.5591 -2.2281 -0.0097 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 0.4067 2.4186 -0.0005 35 1 1.6591 4.5277 -0.0011 36 1 5.3543 2.3947 0.0008 37 1 4.1471 -2.9955 -0.8926 38 1 4.1463 -2.9967 0.8874 39 1 4.0519 -1.5634 -3.2379 40 1 5.8714 -1.5746 2.0237 41 1 7.3874 -1.2902 1.1353 42 1 8.9299 -3.1127 0.6948 43 1 9.7714 -5.3076 1.4282 44 1 8.3730 -6.7488 2.8532 45 1 6.1355 -5.9926 3.5497 46 1 5.2966 -3.7951 2.8215 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097201028.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:04 Heat of formation + Delta-G solvation = 45.658507 kcal Electronic energy + Delta-G solvation = -33239.754278 eV Core-core repulsion = 28817.597770 eV Total energy + Delta-G solvation = -4422.156508 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.144 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -48.66798 -41.08096 -38.75817 -38.17720 -36.55896 -35.27801 -34.88624 -32.10785 -30.80933 -30.39560 -29.91124 -29.07987 -27.86121 -26.90341 -25.60436 -23.38109 -22.96418 -22.06373 -21.96533 -21.45112 -20.21316 -18.58654 -18.40907 -17.09194 -16.70379 -16.20020 -15.88659 -15.75223 -15.33119 -15.29256 -15.10358 -14.88314 -14.64748 -14.52454 -14.07852 -13.69298 -13.42349 -13.19799 -13.05798 -13.01168 -12.92219 -12.77710 -12.70479 -12.32066 -12.09477 -12.05137 -11.49221 -11.40671 -11.30457 -11.02084 -10.80287 -10.71289 -10.56150 -10.45201 -10.27984 -10.09843 -10.09337 -9.92676 -8.69553 -8.44036 -8.42569 -8.23764 -8.19860 -7.39783 -7.09984 -5.90694 -3.14862 0.75522 1.25198 1.87748 1.89951 2.42035 2.81837 3.28044 3.37805 3.45637 3.46923 4.22368 4.30089 4.43085 4.48553 4.57022 4.68145 4.95667 5.04033 5.16837 5.24952 5.27095 5.33068 5.36393 5.37258 5.48834 5.49577 5.64133 5.66953 5.81136 5.87712 5.95310 5.99619 6.04362 6.06883 6.21053 6.24392 6.45406 6.51060 6.56545 6.58049 6.64172 6.73614 6.93805 6.95765 6.99940 7.25523 7.26631 7.28189 7.52270 7.70178 8.12726 8.23571 8.74921 9.05865 9.71616 10.14455 11.16901 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.008940 B = 0.003433 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3131.313292 B = 8154.239416 C = 8572.489530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.522 5.522 3 C 0.105 3.895 4 C -0.129 4.129 5 C -0.131 4.131 6 C 0.072 3.928 7 F -0.143 7.143 8 C -0.090 4.090 9 C 0.102 3.898 10 N -0.400 5.400 11 C 0.204 3.796 12 C 0.229 3.771 13 N -0.564 5.564 14 C -0.230 4.230 15 H 0.079 0.921 16 C 0.001 3.999 17 N -0.900 5.900 18 Si 0.899 3.101 19 H -0.289 1.289 20 H -0.296 1.296 21 H -0.281 1.281 22 C 0.185 3.815 23 C -0.079 4.079 24 C -0.101 4.101 25 C -0.126 4.126 26 C -0.137 4.137 27 C -0.126 4.126 28 C -0.115 4.115 29 C 0.497 3.503 30 O -0.524 6.524 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.148 0.852 37 H 0.114 0.886 38 H 0.046 0.954 39 H 0.253 0.747 40 H 0.047 0.953 41 H 0.061 0.939 42 H 0.118 0.882 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.043 3.978 8.796 10.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.242 5.242 3 C 0.002 3.998 4 C -0.150 4.150 5 C -0.151 4.151 6 C 0.051 3.949 7 F -0.122 7.122 8 C -0.110 4.110 9 C -0.010 4.010 10 N -0.113 5.113 11 C 0.024 3.976 12 C 0.100 3.900 13 N -0.280 5.280 14 C -0.358 4.358 15 H 0.097 0.903 16 C -0.195 4.195 17 N -0.546 5.546 18 Si 0.729 3.271 19 H -0.216 1.216 20 H -0.222 1.222 21 H -0.206 1.206 22 C 0.058 3.942 23 C -0.082 4.082 24 C -0.120 4.120 25 C -0.144 4.144 26 C -0.156 4.156 27 C -0.145 4.145 28 C -0.134 4.134 29 C 0.288 3.712 30 O -0.397 6.397 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.166 0.834 37 H 0.131 0.869 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.136 0.864 43 H 0.130 0.870 44 H 0.128 0.872 45 H 0.130 0.870 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.663 3.623 8.615 10.038 hybrid contribution -0.678 0.162 -1.399 1.563 sum -4.341 3.785 7.216 9.233 Atomic orbital electron populations 1.21942 0.78247 1.03992 1.03157 1.45607 1.07759 1.05499 1.65364 1.18944 0.92383 0.86315 1.02122 1.20497 0.99800 0.89856 1.04810 1.20828 0.92058 0.98786 1.03398 1.17319 0.89850 0.81109 1.06641 1.91474 1.80369 1.45943 1.94410 1.20850 1.01236 0.88678 1.00276 1.18348 0.86837 0.93863 1.01963 1.67955 1.36575 0.95785 1.10990 1.26018 0.86150 0.97397 0.88072 1.19816 0.81593 0.87949 1.00623 1.43892 1.03128 1.79916 1.01031 1.19236 0.91117 1.42655 0.82811 0.90274 1.24582 0.96146 1.01267 0.97550 1.69786 1.10353 1.48672 1.25802 0.86318 0.78813 0.78641 0.83296 1.21594 1.22237 1.20641 1.19762 0.96036 0.90206 0.88203 1.21072 0.93435 0.99449 0.94202 1.21043 0.96078 0.96070 0.98803 1.21071 0.99538 0.94996 0.98843 1.20955 0.95167 0.99420 1.00038 1.21028 0.96107 0.96523 1.00804 1.21029 0.99272 0.94440 0.98610 1.20551 0.90762 0.82762 0.77168 1.90789 1.71220 1.28484 1.49238 0.91341 0.89325 0.90255 0.84728 0.84662 0.83394 0.86876 0.93594 0.93596 0.93443 0.92064 0.86377 0.86989 0.87164 0.87012 0.86796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.86 9.94 59.85 0.59 1.45 16 2 N -0.52 -9.04 3.06 -122.05 -0.37 -9.41 16 3 C 0.10 1.77 6.52 -83.74 -0.55 1.23 16 4 C -0.13 -1.69 9.20 -39.43 -0.36 -2.05 16 5 C -0.13 -1.66 10.00 -39.44 -0.39 -2.05 16 6 C 0.07 1.07 7.28 -39.50 -0.29 0.78 16 7 F -0.14 -2.10 17.26 2.25 0.04 -2.07 16 8 C -0.09 -1.54 9.96 -39.03 -0.39 -1.93 16 9 C 0.10 1.95 6.57 -84.88 -0.56 1.40 16 10 N -0.40 -8.68 9.25 -5.58 -0.05 -8.73 16 11 C 0.20 4.47 5.00 -79.87 -0.40 4.07 16 12 C 0.23 5.12 4.97 -5.19 -0.03 5.10 16 13 N -0.56 -12.49 1.92 -175.98 -0.34 -12.83 16 14 C -0.23 -5.65 9.69 -15.06 -0.15 -5.80 16 15 H 0.08 1.94 7.95 -52.48 -0.42 1.52 16 16 C 0.00 0.03 4.90 -17.43 -0.09 -0.05 16 17 N -0.90 -23.84 8.97 55.49 0.50 -23.34 16 18 Si 0.90 21.13 29.62 -169.99 -5.04 16.09 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 22 C 0.18 3.48 5.79 -5.20 -0.03 3.45 16 23 C -0.08 -1.37 5.46 -104.62 -0.57 -1.94 16 24 C -0.10 -1.68 9.70 -39.58 -0.38 -2.07 16 25 C -0.13 -1.88 10.05 -39.59 -0.40 -2.27 16 26 C -0.14 -1.94 10.05 -39.58 -0.40 -2.34 16 27 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 28 C -0.11 -1.85 9.70 -39.59 -0.38 -2.23 16 29 C 0.50 10.32 7.62 -12.71 -0.10 10.22 16 30 O -0.52 -11.60 16.35 5.12 0.08 -11.52 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.09 1.12 7.49 -51.93 -0.39 0.73 16 33 H 0.08 0.73 6.23 -51.93 -0.32 0.40 16 34 H 0.14 1.33 6.17 -52.48 -0.32 1.00 16 35 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.15 2.51 8.06 -52.48 -0.42 2.09 16 37 H 0.11 2.89 6.26 -51.93 -0.32 2.56 16 38 H 0.05 0.95 8.03 -51.93 -0.42 0.53 16 39 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 40 H 0.05 0.86 8.02 -51.93 -0.42 0.44 16 41 H 0.06 1.15 7.97 -51.92 -0.41 0.73 16 42 H 0.12 1.92 8.06 -52.48 -0.42 1.50 16 43 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 44 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 45 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 46 H 0.11 1.72 8.01 -52.49 -0.42 1.30 16 LS Contribution 391.15 15.07 5.89 5.89 Total: -1.00 -29.16 391.15 -10.08 -39.24 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -5.54 Total: 3.94 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -5.26 Total: 2.72 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.27 Total: -54.31 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.08 Total: -11.52 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.04 Total: 16.09 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.16 -10.08 -39.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097201028.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.899 kcal (2) G-P(sol) polarization free energy of solvation -29.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds