Wall clock time and date at job start Tue Mar 31 2020 06:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.38123 * 120.51763 * 2 1 4 4 C 1.39166 * 120.24522 * 359.97438 * 3 2 1 5 5 C 1.37701 * 120.00911 * 180.02562 * 4 3 2 6 6 C 1.39137 * 120.48350 * 359.97438 * 5 4 3 7 7 F 1.35103 * 119.75677 * 179.97438 * 6 5 4 8 8 C 1.37559 * 120.47753 * 0.02562 * 6 5 4 9 9 C 1.40368 * 119.84789 * 0.02562 * 8 6 5 10 10 N 1.34676 * 120.04636 * 179.97438 * 9 8 6 11 11 C 1.30226 * 121.07269 * 180.02562 * 10 9 8 12 12 C 1.50697 * 119.88358 * 179.97438 * 11 10 9 13 13 N 1.46501 * 109.47295 * 0.02562 * 12 11 10 14 14 C 1.36939 * 119.99838 * 270.00181 * 13 12 11 15 15 H 1.08003 * 119.99899 * 187.73018 * 14 13 12 16 16 C 1.38807 * 120.00139 * 7.72224 * 14 13 12 17 17 N 1.31618 * 120.00177 * 25.45200 * 16 14 13 18 18 Si 1.86807 * 120.00173 * 205.44894 * 16 14 13 19 19 H 1.48496 * 109.46611 * 90.00100 * 18 16 14 20 20 H 1.48502 * 109.46988 * 210.00080 * 18 16 14 21 21 H 1.48494 * 109.47006 * 330.00450 * 18 16 14 22 22 C 1.46492 * 119.99998 * 89.99600 * 13 12 11 23 23 C 1.50704 * 109.47289 * 89.02556 * 22 13 12 24 24 C 1.38240 * 119.99980 * 90.10805 * 23 22 13 25 25 C 1.38229 * 120.00100 * 179.97438 * 24 23 22 26 26 C 1.38236 * 120.00048 * 0.09662 * 25 24 23 27 27 C 1.38235 * 119.99735 * 359.86066 * 26 25 24 28 28 C 1.38232 * 120.00381 * 0.08989 * 27 26 25 29 29 C 1.35097 * 120.51587 * 180.23645 * 2 1 3 30 30 O 1.21778 * 120.40414 * 0.02562 * 29 2 1 31 31 H 1.09000 * 109.47490 * 89.99631 * 1 2 3 32 32 H 1.09001 * 109.47293 * 209.99713 * 1 2 3 33 33 H 1.09002 * 109.46984 * 330.00293 * 1 2 3 34 34 H 1.08005 * 119.99983 * 0.02562 * 4 3 2 35 35 H 1.08000 * 119.75676 * 180.02562 * 5 4 3 36 36 H 1.08009 * 120.07635 * 180.02562 * 8 6 5 37 37 H 1.08999 * 109.47416 * 240.00358 * 12 11 10 38 38 H 1.09004 * 109.46987 * 120.00203 * 12 11 10 39 39 H 0.96994 * 120.00268 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.47421 * 329.02697 * 22 13 12 41 41 H 1.09008 * 109.47631 * 209.02419 * 22 13 12 42 42 H 1.08005 * 119.99519 * 359.70747 * 24 23 22 43 43 H 1.07999 * 120.00074 * 179.97438 * 25 24 23 44 44 H 1.07998 * 120.00015 * 179.97438 * 26 25 24 45 45 H 1.08004 * 119.99674 * 180.02562 * 27 26 25 46 46 H 1.07999 * 120.00251 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1664 1.1899 0.0000 4 6 1.4866 2.4043 -0.0005 5 6 2.1908 3.5876 -0.0011 6 6 3.5821 3.5811 -0.0005 7 9 4.2582 4.7508 -0.0016 8 6 4.2742 2.3923 0.0000 9 6 3.5736 1.1760 -0.0005 10 7 4.2471 0.0098 -0.0005 11 6 3.6174 -1.1301 -0.0015 12 6 4.3980 -2.4192 -0.0021 13 7 5.8325 -2.1215 -0.0007 14 6 6.5037 -1.9812 -1.1860 15 1 7.5796 -1.8864 -1.1894 16 6 5.8015 -1.9611 -2.3832 17 7 4.5425 -1.5778 -2.4013 18 14 6.6433 -2.4779 -3.9687 19 1 6.4606 -3.9374 -4.1730 20 1 6.0454 -1.7396 -5.1100 21 1 8.0930 -2.1677 -3.8833 22 6 6.5486 -1.9737 1.2686 23 6 7.0625 -3.3182 1.7151 24 6 8.3186 -3.7427 1.3241 25 6 8.7902 -4.9758 1.7340 26 6 8.0048 -5.7852 2.5333 27 6 6.7490 -5.3604 2.9249 28 6 6.2778 -4.1269 2.5159 29 6 2.1510 -1.1638 -0.0048 30 8 1.5591 -2.2281 -0.0097 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 0.4067 2.4186 -0.0005 35 1 1.6591 4.5277 -0.0011 36 1 5.3543 2.3947 0.0008 37 1 4.1471 -2.9955 -0.8926 38 1 4.1463 -2.9967 0.8874 39 1 4.0519 -1.5634 -3.2379 40 1 5.8714 -1.5746 2.0237 41 1 7.3874 -1.2902 1.1353 42 1 8.9299 -3.1127 0.6948 43 1 9.7714 -5.3076 1.4282 44 1 8.3730 -6.7488 2.8532 45 1 6.1355 -5.9926 3.5497 46 1 5.2966 -3.7951 2.8215 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097201028.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:03 Heat of formation + Delta-G solvation = 31.891246 kcal Electronic energy + Delta-G solvation = -33240.351271 eV Core-core repulsion = 28817.597770 eV Total energy + Delta-G solvation = -4422.753501 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.144 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.86832 -42.48192 -40.02830 -39.58212 -38.11831 -36.64781 -36.39702 -33.75524 -32.25955 -31.60383 -31.30689 -30.43187 -29.09810 -28.40021 -27.24142 -24.89271 -24.33247 -23.41134 -23.21917 -22.83985 -21.63750 -19.99594 -19.76434 -18.64877 -18.16795 -17.46206 -17.28491 -17.07097 -16.84224 -16.57484 -16.49084 -16.33884 -15.95641 -15.87897 -15.48756 -15.25989 -14.86958 -14.75533 -14.37888 -14.22697 -14.13653 -14.11232 -14.00872 -13.56816 -13.42806 -13.29056 -13.20378 -12.96237 -12.77187 -12.52706 -12.46954 -12.16774 -12.06572 -11.97264 -11.83249 -11.74683 -11.61788 -11.34253 -10.52010 -9.99280 -9.64243 -9.55120 -9.47937 -8.90571 -8.77729 -7.81605 -5.07132 -0.58809 -0.03007 0.64710 0.68051 0.98382 1.45422 1.49977 1.52240 1.54911 1.94844 2.54486 2.94702 3.00210 3.11297 3.16205 3.35145 3.45637 3.70100 3.83915 3.90423 4.10643 4.12996 4.18575 4.21335 4.31760 4.37617 4.40334 4.41551 4.58947 4.60889 4.70487 4.76979 4.80749 4.84654 4.88827 4.94984 5.03485 5.05242 5.20941 5.31172 5.33750 5.35634 5.44463 5.69003 5.72284 5.74930 5.76457 5.86054 5.97951 6.26120 6.31876 6.73317 7.11146 7.25975 7.88994 8.30067 9.21755 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.008940 B = 0.003433 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3131.313292 B = 8154.239416 C = 8572.489530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.515 5.515 3 C 0.098 3.902 4 C -0.112 4.112 5 C -0.102 4.102 6 C 0.074 3.926 7 F -0.140 7.140 8 C -0.103 4.103 9 C 0.055 3.945 10 N -0.410 5.410 11 C 0.175 3.825 12 C 0.240 3.760 13 N -0.573 5.573 14 C -0.224 4.224 15 H 0.075 0.925 16 C -0.043 4.043 17 N -0.915 5.915 18 Si 0.945 3.055 19 H -0.296 1.296 20 H -0.308 1.308 21 H -0.274 1.274 22 C 0.192 3.808 23 C -0.098 4.098 24 C -0.120 4.120 25 C -0.129 4.129 26 C -0.134 4.134 27 C -0.127 4.127 28 C -0.128 4.128 29 C 0.489 3.511 30 O -0.554 6.554 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.124 0.876 34 H 0.182 0.818 35 H 0.183 0.817 36 H 0.135 0.865 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.238 0.762 40 H 0.048 0.952 41 H 0.053 0.947 42 H 0.112 0.888 43 H 0.136 0.864 44 H 0.144 0.856 45 H 0.139 0.861 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.635 5.600 10.070 12.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.234 5.234 3 C -0.005 4.005 4 C -0.132 4.132 5 C -0.121 4.121 6 C 0.053 3.947 7 F -0.119 7.119 8 C -0.123 4.123 9 C -0.056 4.056 10 N -0.122 5.122 11 C -0.006 4.006 12 C 0.111 3.889 13 N -0.290 5.290 14 C -0.354 4.354 15 H 0.093 0.907 16 C -0.237 4.237 17 N -0.563 5.563 18 Si 0.777 3.223 19 H -0.223 1.223 20 H -0.236 1.236 21 H -0.199 1.199 22 C 0.066 3.934 23 C -0.100 4.100 24 C -0.139 4.139 25 C -0.147 4.147 26 C -0.152 4.152 27 C -0.145 4.145 28 C -0.146 4.146 29 C 0.280 3.720 30 O -0.431 6.431 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.143 0.857 34 H 0.199 0.801 35 H 0.200 0.800 36 H 0.153 0.847 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.047 0.953 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.130 0.870 43 H 0.154 0.846 44 H 0.161 0.839 45 H 0.157 0.843 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.251 5.292 9.923 12.411 hybrid contribution -0.217 -0.101 -1.660 1.678 sum -5.468 5.190 8.262 11.185 Atomic orbital electron populations 1.22328 0.75056 1.06095 1.04486 1.45641 1.09643 1.04609 1.63519 1.19195 0.91733 0.87552 1.01999 1.20985 1.01965 0.87911 1.02324 1.21357 0.90759 1.00578 0.99381 1.17451 0.90969 0.80255 1.06029 1.91490 1.80626 1.45492 1.94305 1.20840 1.00956 0.89344 1.01124 1.18575 0.88608 0.93347 1.05093 1.67799 1.38260 0.96736 1.09436 1.25614 0.87285 0.97042 0.90627 1.19430 0.81933 0.88492 0.99028 1.43907 1.03269 1.80429 1.01386 1.19332 0.90996 1.41270 0.83817 0.90675 1.25063 0.96769 1.02564 0.99330 1.70041 1.10917 1.50630 1.24691 0.85572 0.78336 0.77526 0.80909 1.22346 1.23556 1.19887 1.19717 0.95357 0.91375 0.86923 1.20885 0.94387 0.98909 0.95836 1.21135 0.95985 0.97262 0.99468 1.21377 1.00728 0.94134 0.98461 1.21375 0.94635 1.00406 0.98776 1.21374 0.96707 0.95931 1.00513 1.21160 0.99366 0.95291 0.98804 1.20273 0.90539 0.83585 0.77641 1.90752 1.71523 1.29492 1.51350 0.90320 0.89725 0.85738 0.80071 0.79957 0.84725 0.90797 0.92932 0.95258 0.93361 0.92837 0.86989 0.84569 0.83869 0.84283 0.86615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.33 9.94 127.77 1.27 2.60 16 2 N -0.52 -17.31 3.06 -658.07 -2.02 -19.33 16 3 C 0.10 3.13 6.52 38.98 0.25 3.38 16 4 C -0.11 -2.36 9.20 22.37 0.21 -2.16 16 5 C -0.10 -2.03 10.00 22.36 0.22 -1.81 16 6 C 0.07 2.00 7.28 22.33 0.16 2.16 16 7 F -0.14 -3.76 17.26 44.97 0.78 -2.98 16 8 C -0.10 -3.51 9.96 22.63 0.23 -3.28 16 9 C 0.06 2.15 6.57 39.83 0.26 2.41 16 10 N -0.41 -18.68 9.25 -171.55 -1.59 -20.27 16 11 C 0.17 8.11 5.00 45.00 0.23 8.34 16 12 C 0.24 11.53 4.97 85.63 0.43 11.96 16 13 N -0.57 -27.03 1.92 -710.69 -1.37 -28.40 16 14 C -0.22 -11.67 9.69 84.03 0.81 -10.86 16 15 H 0.08 3.87 7.95 -2.91 -0.02 3.85 16 16 C -0.04 -2.32 4.90 84.86 0.42 -1.90 16 17 N -0.92 -51.38 8.97 21.65 0.19 -51.19 16 18 Si 0.95 45.47 29.62 68.60 2.03 47.50 16 19 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 20 H -0.31 -15.28 7.11 99.48 0.71 -14.58 16 21 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 22 C 0.19 7.71 5.79 85.64 0.50 8.20 16 23 C -0.10 -3.53 5.46 -19.86 -0.11 -3.64 16 24 C -0.12 -4.07 9.70 22.27 0.22 -3.86 16 25 C -0.13 -3.68 10.05 22.27 0.22 -3.45 16 26 C -0.13 -3.47 10.05 22.27 0.22 -3.25 16 27 C -0.13 -3.51 10.05 22.27 0.22 -3.29 16 28 C -0.13 -4.16 9.70 22.27 0.22 -3.94 16 29 C 0.49 21.00 7.62 86.40 0.66 21.66 16 30 O -0.55 -25.66 16.35 -4.60 -0.08 -25.74 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.08 2.00 7.49 -2.39 -0.02 1.98 16 33 H 0.12 1.60 6.23 -2.39 -0.01 1.58 16 34 H 0.18 2.20 6.17 -2.91 -0.02 2.18 16 35 H 0.18 2.10 8.06 -2.91 -0.02 2.07 16 36 H 0.13 4.81 8.06 -2.91 -0.02 4.79 16 37 H 0.07 4.10 6.26 -2.39 -0.01 4.08 16 38 H 0.05 2.35 8.03 -2.38 -0.02 2.33 16 39 H 0.24 13.63 8.31 -92.71 -0.77 12.86 16 40 H 0.05 1.87 8.02 -2.39 -0.02 1.85 16 41 H 0.05 2.16 7.97 -2.38 -0.02 2.14 16 42 H 0.11 3.82 8.06 -2.91 -0.02 3.80 16 43 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 44 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 45 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 46 H 0.12 3.62 8.01 -2.91 -0.02 3.60 16 Total: -1.00 -69.34 391.15 5.61 -63.73 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 1.02 Total: 17.39 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: 6.63 Total: 19.28 kcal Atomic # 7 Polarization: -114.41 SS G_CDS: -4.77 Total: -119.19 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.08 Total: -25.74 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.78 Total: -2.98 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -69.34 5.61 -63.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097201028.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.620 kcal (2) G-P(sol) polarization free energy of solvation -69.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds