Wall clock time and date at job start Tue Mar 31 2020 06:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38543 * 119.19434 * 2 1 4 4 C 1.39512 * 119.15819 * 180.27778 * 3 2 1 5 5 C 1.48036 * 121.09065 * 179.72683 * 4 3 2 6 6 O 1.21529 * 119.99766 * 121.58980 * 5 4 3 7 7 N 1.34773 * 120.00225 * 301.58682 * 5 4 3 8 8 C 1.46505 * 119.99611 * 8.31761 * 7 5 4 9 9 C 1.50706 * 109.46942 * 89.99938 * 8 7 5 10 10 H 1.07994 * 120.00006 * 359.97438 * 9 8 7 11 11 C 1.37874 * 119.99686 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00098 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00065 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46662 * 60.00104 * 13 11 9 15 15 H 1.48495 * 109.47184 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47002 * 300.00322 * 13 11 9 17 17 C 1.46496 * 120.00443 * 188.31388 * 7 5 4 18 18 C 1.52998 * 117.49453 * 15.20090 * 17 7 5 19 19 C 1.52997 * 60.00168 * 252.51210 * 18 17 7 20 20 C 1.40616 * 117.81692 * 359.51531 * 4 3 2 21 21 C 1.40329 * 119.36139 * 0.48883 * 20 4 3 22 22 N 1.31572 * 119.18822 * 180.02562 * 2 1 3 23 23 O 1.34889 * 107.10604 * 179.74945 * 21 20 4 24 24 N 1.41302 * 109.67141 * 0.02562 * 23 21 20 25 25 C 1.30967 * 109.53619 * 359.97438 * 24 23 21 26 26 C 1.47549 * 126.48675 * 180.02562 * 25 24 23 27 27 C 1.36119 * 125.94071 * 316.09430 * 26 25 24 28 28 C 1.40774 * 106.72679 * 179.85097 * 27 26 25 29 29 C 1.34844 * 107.05522 * 0.40823 * 28 27 26 30 30 O 1.34203 * 108.69538 * 359.74661 * 29 28 27 31 31 H 1.09007 * 109.47158 * 89.99513 * 1 2 3 32 32 H 1.09001 * 109.47310 * 209.99930 * 1 2 3 33 33 H 1.09001 * 109.46953 * 329.99733 * 1 2 3 34 34 H 1.08004 * 120.41939 * 0.02562 * 3 2 1 35 35 H 1.09004 * 109.47091 * 209.99439 * 8 7 5 36 36 H 1.08997 * 109.47466 * 330.00220 * 8 7 5 37 37 H 0.97005 * 119.99713 * 179.97438 * 12 11 9 38 38 H 1.09001 * 115.55498 * 160.90905 * 17 7 5 39 39 H 1.09003 * 117.50197 * 0.02562 * 18 17 7 40 40 H 1.09011 * 117.49682 * 145.01847 * 18 17 7 41 41 H 1.09002 * 117.49420 * 252.51339 * 19 18 17 42 42 H 1.08994 * 117.52090 * 107.48646 * 19 18 17 43 43 H 1.07996 * 126.63322 * 0.02562 * 27 26 25 44 44 H 1.08007 * 126.46865 * 180.19106 * 28 27 26 45 45 H 1.07999 * 125.65173 * 179.72218 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1828 1.2094 0.0000 4 6 3.5779 1.2086 -0.0059 5 6 4.3431 2.4758 -0.0122 6 8 5.1330 2.7131 0.8804 7 7 4.1640 3.3663 -1.0078 8 6 3.0874 3.1693 -1.9817 9 6 1.8346 3.8474 -1.4897 10 1 1.8398 4.3721 -0.5459 11 6 0.6820 3.7977 -2.2447 12 7 0.6757 3.1583 -3.3939 13 14 -0.8710 4.6376 -1.6346 14 1 -0.6145 6.0906 -1.4665 15 1 -1.9618 4.4390 -2.6224 16 1 -1.2710 4.0513 -0.3302 17 6 5.0456 4.5313 -1.1162 18 6 6.3482 4.5083 -0.3139 19 6 5.1981 5.4191 0.1205 20 6 4.2333 -0.0355 -0.0011 21 6 3.4720 -1.2143 -0.0011 22 7 2.1487 -1.1486 -0.0005 23 8 4.3397 -2.2470 -0.0017 24 7 5.6644 -1.7553 -0.0015 25 6 5.6455 -0.4457 -0.0013 26 6 6.8189 0.4487 -0.0016 27 6 7.9359 0.3015 0.7623 28 6 8.7921 1.3710 0.4384 29 6 8.1599 2.1164 -0.4906 30 8 6.9689 1.5565 -0.7537 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6365 2.1411 0.0004 35 1 3.3808 3.5990 -2.9396 36 1 2.8990 2.1028 -2.1044 37 1 -0.1354 3.1231 -3.9248 38 1 5.0630 5.0187 -2.0909 39 1 6.5494 3.6263 0.2941 40 1 7.2230 4.9807 -0.7610 41 1 5.3164 6.4907 -0.0407 42 1 4.6423 5.1368 1.0145 43 1 8.1291 -0.4852 1.4764 44 1 9.7693 1.5607 0.8576 45 1 8.5475 3.0152 -0.9469 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097212579.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:03 Heat of formation + Delta-G solvation = 116.889365 kcal Electronic energy + Delta-G solvation = -34844.764961 eV Core-core repulsion = 30413.324466 eV Total energy + Delta-G solvation = -4431.440495 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.136 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.62431 -41.79549 -39.91386 -38.61600 -36.03309 -34.71929 -34.21451 -33.02193 -32.50056 -31.92575 -31.51762 -29.33400 -27.54848 -27.34474 -24.65932 -23.50893 -23.18605 -22.91989 -22.12767 -21.77172 -21.48119 -20.30824 -19.05828 -17.98385 -17.34480 -16.98066 -16.86721 -16.46209 -16.23917 -16.02763 -15.53863 -15.20748 -14.72992 -14.61643 -14.27768 -13.80911 -13.76722 -13.66734 -13.21405 -13.09841 -12.91429 -12.69103 -12.64607 -12.47228 -12.34297 -12.12808 -11.93153 -11.78278 -11.52092 -11.40441 -11.31301 -11.03349 -10.87703 -10.70549 -10.41414 -10.00819 -9.92251 -9.80919 -9.70082 -9.39032 -8.95372 -8.75753 -8.65297 -8.40890 -7.73160 -6.35040 -4.44398 0.26712 1.17766 1.28986 1.89041 2.19812 2.61498 2.83856 2.95916 3.10941 3.18991 3.20727 3.41647 3.76447 3.94509 4.08513 4.16384 4.38856 4.57149 4.67661 4.82304 4.86189 4.92182 4.96955 5.05804 5.28224 5.37362 5.43557 5.51342 5.55879 5.64665 5.77933 5.78244 5.82800 5.91315 5.98752 6.04204 6.06630 6.09691 6.27892 6.36878 6.38457 6.58811 6.63967 6.75745 6.94681 6.98724 7.10474 7.38877 7.57261 7.80593 7.84420 8.01672 8.54130 8.69373 9.22423 10.70677 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.009310 B = 0.005132 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3006.945687 B = 5454.360207 C = 7814.378205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.204 3.796 3 C -0.142 4.142 4 C 0.015 3.985 5 C 0.562 3.438 6 O -0.538 6.538 7 N -0.552 5.552 8 C 0.235 3.765 9 C -0.544 4.544 10 H 0.065 0.935 11 C 0.072 3.928 12 N -0.881 5.881 13 Si 0.892 3.108 14 H -0.275 1.275 15 H -0.284 1.284 16 H -0.271 1.271 17 C 0.092 3.908 18 C -0.209 4.209 19 C -0.185 4.185 20 C -0.215 4.215 21 C 0.288 3.712 22 N -0.477 5.477 23 O -0.071 6.071 24 N -0.261 5.261 25 C 0.227 3.773 26 C 0.034 3.966 27 C -0.145 4.145 28 C -0.221 4.221 29 C 0.001 3.999 30 O -0.145 6.145 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.184 0.816 35 H 0.040 0.960 36 H 0.039 0.961 37 H 0.269 0.731 38 H 0.126 0.874 39 H 0.140 0.860 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.153 0.847 44 H 0.154 0.846 45 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.440 -1.204 4.856 9.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.062 3.938 3 C -0.162 4.162 4 C 0.003 3.997 5 C 0.349 3.651 6 O -0.419 6.419 7 N -0.279 5.279 8 C 0.115 3.885 9 C -0.582 4.582 10 H 0.083 0.917 11 C -0.133 4.133 12 N -0.518 5.518 13 Si 0.718 3.282 14 H -0.200 1.200 15 H -0.209 1.209 16 H -0.197 1.197 17 C -0.013 4.013 18 C -0.246 4.246 19 C -0.224 4.224 20 C -0.222 4.222 21 C 0.105 3.895 22 N -0.198 5.198 23 O -0.080 6.080 24 N -0.007 5.007 25 C 0.049 3.951 26 C -0.017 4.017 27 C -0.167 4.167 28 C -0.240 4.240 29 C -0.068 4.068 30 O -0.038 6.038 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.201 0.799 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.078 0.922 38 H 0.144 0.856 39 H 0.157 0.843 40 H 0.099 0.901 41 H 0.107 0.893 42 H 0.112 0.888 43 H 0.171 0.829 44 H 0.172 0.828 45 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 8.761 -3.026 4.875 10.473 hybrid contribution -0.798 1.944 0.122 2.105 sum 7.964 -1.083 4.998 9.464 Atomic orbital electron populations 1.20846 0.86884 1.03882 1.04514 1.21395 0.97239 0.85971 0.89233 1.22890 0.92631 1.01831 0.98868 1.19888 0.94062 0.92232 0.93549 1.17923 0.81834 0.82937 0.82426 1.90582 1.36880 1.77923 1.36500 1.47514 1.31120 1.20882 1.28373 1.19605 0.83423 0.98150 0.87298 1.21376 0.94599 1.35447 1.06811 0.91713 1.24923 0.98904 0.94872 0.94604 1.69917 1.29113 1.40705 1.12070 0.86645 0.82226 0.80446 0.78835 1.19992 1.20945 1.19665 1.21496 0.93530 0.89973 0.96304 1.24010 0.91485 1.04292 1.04779 1.23128 1.02959 0.96311 0.99984 1.20960 0.91209 0.95402 1.14662 1.20050 0.89316 0.85587 0.94501 1.66343 1.04460 1.30693 1.18326 1.89195 1.11224 1.26024 1.81507 1.80444 0.91377 1.08350 1.20506 1.20883 0.90281 0.90786 0.93101 1.18325 0.93898 0.89630 0.99872 1.21761 0.92397 1.01019 1.01490 1.21688 1.02377 0.97384 1.02525 1.24187 0.83243 0.99351 1.00068 1.84162 1.34790 1.32143 1.52716 0.88816 0.90084 0.89488 0.79945 0.94205 0.94331 0.92150 0.85648 0.84271 0.90099 0.89281 0.88758 0.82914 0.82793 0.77661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.42 10.15 36.01 0.37 -1.06 16 2 C 0.20 3.54 6.78 -82.59 -0.56 2.98 16 3 C -0.14 -2.69 7.55 -38.99 -0.29 -2.98 16 4 C 0.02 0.31 4.68 -104.51 -0.49 -0.18 16 5 C 0.56 11.28 5.45 -12.24 -0.07 11.22 16 6 O -0.54 -11.01 11.25 -11.03 -0.12 -11.13 16 7 N -0.55 -10.94 2.82 -168.50 -0.48 -11.42 16 8 C 0.23 5.20 4.76 -5.19 -0.02 5.18 16 9 C -0.54 -12.60 6.90 -34.44 -0.24 -12.83 16 10 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 11 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.88 -22.13 13.29 55.43 0.74 -21.39 16 13 Si 0.89 18.43 29.54 -169.99 -5.02 13.41 16 14 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 15 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 16 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 17 C 0.09 1.58 6.62 -67.93 -0.45 1.13 16 18 C -0.21 -3.12 8.07 -26.73 -0.22 -3.34 16 19 C -0.19 -2.96 9.88 -26.73 -0.26 -3.23 16 20 C -0.22 -4.21 6.21 -104.64 -0.65 -4.86 16 21 C 0.29 5.55 8.63 -16.48 -0.14 5.41 16 22 N -0.48 -8.82 10.25 -9.28 -0.10 -8.92 16 23 O -0.07 -1.34 12.04 7.51 0.09 -1.25 16 24 N -0.26 -4.71 12.88 34.45 0.44 -4.27 16 25 C 0.23 4.17 7.28 -80.87 -0.59 3.58 16 26 C 0.03 0.57 5.98 -36.55 -0.22 0.35 16 27 C -0.15 -2.02 10.85 -39.39 -0.43 -2.45 16 28 C -0.22 -2.57 10.88 -39.83 -0.43 -3.00 16 29 C 0.00 0.02 9.53 29.53 0.28 0.30 16 30 O -0.14 -2.35 7.77 -11.57 -0.09 -2.44 16 31 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.09 1.08 8.07 -51.93 -0.42 0.66 16 34 H 0.18 3.58 5.56 -52.48 -0.29 3.29 16 35 H 0.04 0.93 8.04 -51.93 -0.42 0.52 16 36 H 0.04 0.92 6.01 -51.93 -0.31 0.61 16 37 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 38 H 0.13 2.01 8.10 -51.93 -0.42 1.59 16 39 H 0.14 2.33 2.87 -52.09 -0.15 2.18 16 40 H 0.08 0.96 8.09 -51.92 -0.42 0.54 16 41 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.09 1.71 7.61 -51.93 -0.40 1.31 16 43 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 44 H 0.15 1.30 8.06 -52.48 -0.42 0.88 16 45 H 0.21 1.77 7.69 -52.49 -0.40 1.37 16 LS Contribution 375.50 15.07 5.66 5.66 Total: -1.00 -27.73 375.50 -8.28 -36.01 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -4.89 Total: 7.93 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -4.51 Total: -2.20 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.61 Total: -45.99 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.12 Total: -14.82 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.02 Total: 13.41 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -27.73 -8.28 -36.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097212579.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.899 kcal (2) G-P(sol) polarization free energy of solvation -27.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds