Wall clock time and date at job start Tue Mar 31 2020 05:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86799 * 119.99825 * 2 1 4 4 H 1.48507 * 109.46879 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47441 * 300.00290 * 3 2 1 6 6 H 1.48499 * 109.47328 * 60.00509 * 3 2 1 7 7 C 1.39906 * 119.99827 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99770 * 188.91432 * 7 2 1 9 9 C 1.41138 * 120.00198 * 8.90805 * 7 2 1 10 10 C 1.40881 * 120.16173 * 210.41793 * 9 7 2 11 11 C 1.36356 * 119.82840 * 180.02562 * 10 9 7 12 12 C 1.39508 * 120.16831 * 359.97438 * 11 10 9 13 13 N 1.39125 * 119.83361 * 179.97438 * 12 11 10 14 14 C 1.34785 * 119.99592 * 143.88051 * 13 12 11 15 15 O 1.21559 * 120.00053 * 4.44063 * 14 13 12 16 16 C 1.47793 * 120.00013 * 184.44172 * 14 13 12 17 17 C 1.39629 * 120.14626 * 4.61497 * 16 14 13 18 18 C 1.37928 * 119.84821 * 180.02562 * 17 16 14 19 19 C 1.38382 * 120.15195 * 359.97438 * 18 17 16 20 20 C 1.38348 * 120.29560 * 359.97408 * 19 18 17 21 21 C 1.37970 * 120.14556 * 0.04980 * 20 19 18 22 22 C 1.50707 * 120.07314 * 179.97438 * 21 20 19 23 23 N 1.46896 * 109.46922 * 106.30681 * 22 21 20 24 24 C 1.47022 * 110.99957 * 294.96371 * 23 22 21 25 25 C 1.53090 * 109.25547 * 177.60845 * 24 23 22 26 26 O 1.43009 * 109.26273 * 56.85462 * 25 24 23 27 27 C 1.43026 * 113.73459 * 301.32955 * 26 25 24 28 28 C 1.47018 * 110.99777 * 171.33632 * 23 22 21 29 29 C 1.39512 * 120.32677 * 0.27959 * 12 11 10 30 30 C 1.36354 * 120.16518 * 359.44600 * 29 12 11 31 31 H 0.97005 * 119.99924 * 359.97438 * 1 2 3 32 32 H 1.08001 * 120.08601 * 359.97438 * 10 9 7 33 33 H 1.08005 * 119.91133 * 179.97438 * 11 10 9 34 34 H 0.96992 * 120.00600 * 323.88425 * 13 12 11 35 35 H 1.07997 * 120.07101 * 359.97438 * 17 16 14 36 36 H 1.08008 * 119.92175 * 180.25205 * 18 17 16 37 37 H 1.07997 * 119.85501 * 180.02562 * 19 18 17 38 38 H 1.07996 * 119.92630 * 180.02562 * 20 19 18 39 39 H 1.08998 * 109.47092 * 226.30420 * 22 21 20 40 40 H 1.08996 * 109.47127 * 346.30332 * 22 21 20 41 41 H 1.08998 * 109.50700 * 297.54634 * 24 23 22 42 42 H 1.09004 * 109.50222 * 57.67560 * 24 23 22 43 43 H 1.08999 * 109.51261 * 296.91443 * 25 24 23 44 44 H 1.09006 * 109.53929 * 176.80482 * 25 24 23 45 45 H 1.09001 * 109.50335 * 298.72647 * 27 26 25 46 46 H 1.09008 * 109.53834 * 178.62755 * 27 26 25 47 47 H 1.09003 * 109.50323 * 302.31745 * 28 23 22 48 48 H 1.08997 * 109.51175 * 62.45225 * 28 23 22 49 49 H 1.08003 * 119.91494 * 179.71929 * 29 12 11 50 50 H 1.08006 * 120.08436 * 180.25304 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.7027 1.3464 -0.0006 5 1 1.8839 2.3965 -1.2124 6 1 1.8840 2.3964 1.2125 7 6 2.0082 -1.2116 -0.0005 8 1 3.0784 -1.2173 0.1444 9 6 1.3153 -2.4265 -0.1904 10 6 1.7893 -3.6122 0.4048 11 6 1.1148 -4.7822 0.2165 12 6 -0.0421 -4.8069 -0.5627 13 7 -0.7246 -6.0046 -0.7507 14 6 -2.0708 -6.0100 -0.8164 15 8 -2.6847 -4.9611 -0.7926 16 6 -2.8006 -7.2912 -0.9174 17 6 -2.1067 -8.5009 -0.8481 18 6 -2.7939 -9.6929 -0.9436 19 6 -4.1680 -9.6919 -1.1071 20 6 -4.8618 -8.4970 -1.1755 21 6 -4.1866 -7.2974 -1.0818 22 6 -4.9440 -5.9966 -1.1571 23 7 -5.0136 -5.3926 0.1802 24 6 -5.8036 -6.2289 1.0956 25 6 -5.8003 -5.5945 2.4888 26 8 -6.3075 -4.2602 2.4009 27 6 -5.5615 -3.4178 1.5180 28 6 -5.5623 -4.0302 0.1149 29 6 -0.5146 -3.6377 -1.1596 30 6 0.1462 -2.4593 -0.9757 31 1 -0.4850 0.8401 0.0004 32 1 2.6850 -3.5947 1.0080 33 1 1.4772 -5.6921 0.6718 34 1 -0.2316 -6.8358 -0.8344 35 1 -1.0342 -8.5030 -0.7209 36 1 -2.2588 -10.6294 -0.8861 37 1 -4.7013 -10.6281 -1.1809 38 1 -5.9342 -8.5031 -1.3028 39 1 -4.4310 -5.3163 -1.8368 40 1 -5.9531 -6.1844 -1.5239 41 1 -6.8281 -6.3006 0.7306 42 1 -5.3648 -7.2253 1.1484 43 1 -4.7817 -5.5718 2.8762 44 1 -6.4311 -6.1802 3.1576 45 1 -4.5359 -3.3318 1.8771 46 1 -6.0193 -2.4291 1.4840 47 1 -4.9474 -3.4216 -0.5481 48 1 -6.5830 -4.0667 -0.2658 49 1 -1.4084 -3.6654 -1.7652 50 1 -0.2230 -1.5541 -1.4350 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097212589.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:15 Heat of formation + Delta-G solvation = -9.407355 kcal Electronic energy + Delta-G solvation = -33346.752749 eV Core-core repulsion = 29111.094623 eV Total energy + Delta-G solvation = -4235.658126 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.173 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.45227 -39.24639 -38.49766 -37.00213 -35.76744 -34.35000 -32.97023 -31.77366 -31.29665 -30.98929 -29.46379 -28.83387 -27.82002 -25.32514 -24.32000 -23.93631 -23.42392 -21.71884 -21.33031 -20.69998 -20.19347 -19.53251 -17.66755 -17.26302 -16.52566 -16.29306 -16.14826 -15.74716 -15.35599 -15.22149 -15.00467 -14.89247 -14.52632 -14.46456 -14.31458 -13.93811 -13.70848 -13.46044 -13.07053 -12.96096 -12.65012 -12.51454 -12.28889 -12.07964 -11.95948 -11.73172 -11.65504 -11.46983 -11.31842 -11.28188 -11.13516 -11.00812 -10.84621 -10.47204 -10.45640 -9.85912 -9.78295 -9.58136 -9.35176 -9.05767 -9.02106 -8.81604 -8.61109 -8.11890 -7.48985 -6.89630 -6.64321 -4.27962 0.86652 1.18230 2.69637 3.05075 3.10668 3.13347 3.15824 3.29643 3.77206 3.85960 3.96851 3.98873 4.14545 4.62814 4.65999 4.71789 4.78483 4.94726 5.00214 5.10435 5.15369 5.23823 5.25068 5.35993 5.39022 5.48931 5.65084 5.68102 5.70888 5.76304 5.77861 5.85482 5.97391 6.03897 6.12004 6.17480 6.17931 6.27432 6.38737 6.43677 6.73916 6.85512 7.04979 7.08036 7.10991 7.15655 7.21866 7.26285 7.33173 7.64434 7.73493 8.01572 8.10008 8.26409 8.37033 8.67958 8.87187 8.93768 9.05903 10.28955 Molecular weight = 366.17amu Principal moments of inertia in cm(-1) A = 0.010093 B = 0.002984 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.493755 B = 9380.351575 C =11413.426174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.072 3.928 3 Si 0.910 3.090 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.462 4.462 8 H 0.076 0.924 9 C 0.105 3.895 10 C -0.209 4.209 11 C -0.110 4.110 12 C 0.007 3.993 13 N -0.652 5.652 14 C 0.536 3.464 15 O -0.491 6.491 16 C -0.100 4.100 17 C -0.093 4.093 18 C -0.127 4.127 19 C -0.104 4.104 20 C -0.125 4.125 21 C -0.029 4.029 22 C 0.101 3.899 23 N -0.504 5.504 24 C 0.016 3.984 25 C 0.066 3.934 26 O -0.391 6.391 27 C 0.064 3.936 28 C 0.031 3.969 29 C -0.087 4.087 30 C -0.147 4.147 31 H 0.278 0.722 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.390 0.610 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.104 0.896 40 H 0.029 0.971 41 H 0.034 0.966 42 H 0.080 0.920 43 H 0.059 0.941 44 H 0.091 0.909 45 H 0.066 0.934 46 H 0.095 0.905 47 H 0.094 0.906 48 H 0.031 0.969 49 H 0.105 0.895 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.631 -15.823 -1.579 19.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.492 4.492 8 H 0.094 0.906 9 C 0.102 3.898 10 C -0.229 4.229 11 C -0.130 4.130 12 C -0.086 4.086 13 N -0.296 5.296 14 C 0.323 3.677 15 O -0.366 6.366 16 C -0.104 4.104 17 C -0.112 4.112 18 C -0.146 4.146 19 C -0.122 4.122 20 C -0.144 4.144 21 C -0.030 4.030 22 C -0.025 4.025 23 N -0.228 5.228 24 C -0.113 4.113 25 C -0.012 4.012 26 O -0.310 6.310 27 C -0.013 4.013 28 C -0.097 4.097 29 C -0.107 4.107 30 C -0.167 4.167 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.224 0.776 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.122 0.878 40 H 0.047 0.953 41 H 0.053 0.947 42 H 0.099 0.901 43 H 0.077 0.923 44 H 0.109 0.891 45 H 0.084 0.916 46 H 0.113 0.887 47 H 0.113 0.887 48 H 0.050 0.950 49 H 0.123 0.877 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.978 -14.771 -1.249 18.446 hybrid contribution 0.079 -0.043 -0.360 0.371 sum -10.899 -14.814 -1.609 18.461 Atomic orbital electron populations 1.69830 1.07293 1.28796 1.36619 1.25884 0.94848 1.01115 0.92614 0.86243 0.80720 0.81135 0.78459 1.18573 1.19870 1.20055 1.19540 0.95457 0.90464 1.43767 0.90592 1.17679 0.91674 0.92021 0.88414 1.20608 1.02849 0.93287 1.06193 1.20074 0.96530 0.97228 0.99178 1.17169 0.97698 0.85510 1.08199 1.42894 1.05711 1.09224 1.71810 1.18127 0.82110 0.88676 0.78767 1.90777 1.66635 1.32161 1.46985 1.20010 0.93755 0.93557 1.03062 1.21375 0.99888 0.91881 0.98055 1.21068 0.94481 0.97880 1.01139 1.21235 0.94426 0.97877 0.98681 1.21030 0.99797 0.91782 1.01770 1.19851 0.92468 0.94885 0.95814 1.21032 0.96641 0.93171 0.91702 1.62023 1.50694 1.01430 1.08667 1.22826 0.95872 0.98062 0.94493 1.22590 0.99742 0.83326 0.95496 1.87926 1.55352 1.21896 1.65778 1.22681 0.97185 0.93170 0.88247 1.22657 0.97690 0.90611 0.98736 1.20522 0.98933 0.92078 0.99140 1.21039 0.98179 0.96342 1.01160 0.91079 0.88721 0.89362 0.77600 0.85636 0.85690 0.85893 0.85934 0.87775 0.95256 0.94744 0.90134 0.92317 0.89063 0.91604 0.88654 0.88722 0.95045 0.87695 0.86155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.05 10.85 55.55 0.60 -20.45 16 2 C 0.07 1.82 5.27 -17.34 -0.09 1.73 16 3 Si 0.91 18.93 29.57 -169.99 -5.03 13.91 16 4 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.46 -12.27 9.04 -37.86 -0.34 -12.61 16 8 H 0.08 1.94 7.86 -52.49 -0.41 1.52 16 9 C 0.10 2.79 5.54 -106.80 -0.59 2.19 16 10 C -0.21 -5.06 9.74 -39.26 -0.38 -5.44 16 11 C -0.11 -2.40 9.90 -39.79 -0.39 -2.79 16 12 C 0.01 0.14 6.28 -83.60 -0.53 -0.38 16 13 N -0.65 -11.46 5.24 -10.61 -0.06 -11.51 16 14 C 0.54 9.42 7.55 -12.35 -0.09 9.33 16 15 O -0.49 -9.95 9.88 5.31 0.05 -9.89 16 16 C -0.10 -1.39 5.87 -104.97 -0.62 -2.01 16 17 C -0.09 -1.03 9.52 -39.18 -0.37 -1.41 16 18 C -0.13 -1.16 10.03 -39.64 -0.40 -1.56 16 19 C -0.10 -0.91 10.04 -39.49 -0.40 -1.31 16 20 C -0.13 -1.26 9.13 -39.64 -0.36 -1.62 16 21 C -0.03 -0.37 4.38 -104.22 -0.46 -0.82 16 22 C 0.10 1.37 4.11 -4.97 -0.02 1.35 16 23 N -0.50 -7.37 3.33 -235.75 -0.79 -8.15 16 24 C 0.02 0.20 5.45 -3.71 -0.02 0.18 16 25 C 0.07 0.84 7.01 37.20 0.26 1.11 16 26 O -0.39 -5.80 10.83 -35.23 -0.38 -6.18 16 27 C 0.06 0.94 7.01 37.21 0.26 1.20 16 28 C 0.03 0.45 5.58 -3.71 -0.02 0.43 16 29 C -0.09 -2.10 8.60 -39.79 -0.34 -2.44 16 30 C -0.15 -3.88 8.59 -39.26 -0.34 -4.22 16 31 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 32 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 33 H 0.09 1.65 8.06 -52.48 -0.42 1.22 16 34 H 0.39 5.47 6.91 -40.82 -0.28 5.18 16 35 H 0.13 1.18 6.46 -52.49 -0.34 0.84 16 36 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 37 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.12 1.01 7.99 -52.49 -0.42 0.59 16 39 H 0.10 1.62 6.46 -51.93 -0.34 1.29 16 40 H 0.03 0.35 7.93 -51.93 -0.41 -0.06 16 41 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.97 6.78 -51.93 -0.35 0.62 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.10 1.22 8.14 -51.92 -0.42 0.79 16 47 H 0.09 1.50 8.10 -51.93 -0.42 1.08 16 48 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 49 H 0.11 2.52 6.30 -52.48 -0.33 2.19 16 50 H 0.12 3.31 6.27 -52.48 -0.33 2.98 16 LS Contribution 400.09 15.07 6.03 6.03 Total: -1.00 -30.33 400.09 -11.80 -42.13 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -6.99 Total: 13.23 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -5.24 Total: -19.11 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: -0.24 Total: -40.12 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.33 Total: -16.08 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.33 -11.80 -42.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097212589.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.721 kcal (2) G-P(sol) polarization free energy of solvation -30.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds