Wall clock time and date at job start Tue Mar 31 2020 06:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00252 * 2 1 4 4 H 1.48506 * 109.46942 * 274.99068 * 3 2 1 5 5 H 1.48505 * 109.47328 * 34.98798 * 3 2 1 6 6 H 1.48501 * 109.47272 * 154.99004 * 3 2 1 7 7 C 1.37881 * 119.99444 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99294 * 187.40412 * 7 2 1 9 9 C 1.50698 * 120.00156 * 7.40981 * 7 2 1 10 10 C 1.53042 * 109.45849 * 187.34836 * 9 7 2 11 11 C 1.53187 * 109.31371 * 178.62559 * 10 9 7 12 12 N 1.46934 * 108.77395 * 54.63638 * 11 10 9 13 13 C 1.34773 * 120.62987 * 126.36731 * 12 11 10 14 14 O 1.21581 * 120.00354 * 5.37033 * 13 12 11 15 15 N 1.34779 * 119.99521 * 185.36987 * 13 12 11 16 16 C 1.39559 * 119.99682 * 171.90121 * 15 13 12 17 17 C 1.39565 * 120.82909 * 28.57689 * 16 15 13 18 18 C 1.37813 * 119.20371 * 179.97438 * 17 16 15 19 19 N 1.32041 * 120.90706 * 359.72759 * 18 17 16 20 20 C 1.32370 * 121.81786 * 0.56220 * 19 18 17 21 21 O 1.35676 * 119.65131 * 179.71050 * 20 19 18 22 22 C 1.35896 * 118.00261 * 5.53501 * 21 20 19 23 23 C 1.38751 * 120.05314 * 75.35486 * 22 21 20 24 24 C 1.38141 * 119.94245 * 179.97438 * 23 22 21 25 25 C 1.38276 * 120.05602 * 359.97438 * 24 23 22 26 26 C 1.38263 * 120.11374 * 0.25485 * 25 24 23 27 27 C 1.38142 * 120.05921 * 359.48906 * 26 25 24 28 28 C 1.38670 * 120.69866 * 359.44216 * 20 19 18 29 29 C 1.46930 * 118.73516 * 306.64198 * 12 11 10 30 30 C 1.52756 * 109.00700 * 53.31138 * 29 12 11 31 31 H 0.97007 * 119.99484 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.45824 * 307.31564 * 9 7 2 33 33 H 1.09000 * 109.49906 * 58.67441 * 10 9 7 34 34 H 1.09006 * 109.52126 * 298.59750 * 10 9 7 35 35 H 1.08993 * 109.58801 * 294.84606 * 11 10 9 36 36 H 1.08997 * 109.70391 * 174.48911 * 11 10 9 37 37 H 0.96991 * 120.00380 * 351.89194 * 15 13 12 38 38 H 1.08007 * 120.39855 * 359.96145 * 17 16 15 39 39 H 1.08001 * 119.54056 * 180.02562 * 18 17 16 40 40 H 1.07999 * 120.02802 * 359.95213 * 23 22 21 41 41 H 1.07994 * 119.97125 * 180.02562 * 24 23 22 42 42 H 1.07997 * 119.94073 * 179.97438 * 25 24 23 43 43 H 1.08003 * 119.97162 * 179.75468 * 26 25 24 44 44 H 1.07999 * 120.03019 * 180.25486 * 27 26 25 45 45 H 1.07999 * 120.48497 * 180.25121 * 28 20 19 46 46 H 1.09000 * 109.58336 * 173.14712 * 29 12 11 47 47 H 1.09003 * 109.58544 * 293.57014 * 29 12 11 48 48 H 1.08999 * 109.56297 * 185.55110 * 30 29 12 49 49 H 1.09003 * 109.38878 * 65.51729 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3912 2.1072 -1.3948 5 1 1.5034 2.6200 0.8028 6 1 3.5955 1.4119 0.5919 7 6 2.0045 -1.1942 -0.0005 8 1 3.0777 -1.1981 0.1200 9 6 1.2603 -2.4937 -0.1694 10 6 2.2222 -3.6640 0.0484 11 6 1.4551 -4.9827 -0.0901 12 7 0.7713 -4.9977 -1.3905 13 6 0.9474 -6.0231 -2.2472 14 8 1.5985 -6.9926 -1.9092 15 7 0.4016 -5.9737 -3.4785 16 6 0.7206 -6.9506 -4.4228 17 6 1.0752 -8.2407 -4.0254 18 6 1.3833 -9.1793 -4.9863 19 7 1.3415 -8.8745 -6.2703 20 6 1.0156 -7.6619 -6.6895 21 8 0.9922 -7.3952 -8.0195 22 6 1.1966 -8.4264 -8.8807 23 6 0.1883 -9.3521 -9.1080 24 6 0.3983 -10.3992 -9.9843 25 6 1.6118 -10.5248 -10.6351 26 6 2.6198 -9.6063 -10.4068 27 6 2.4131 -8.5545 -9.5355 28 6 0.6925 -6.6629 -5.7837 29 6 -0.1033 -3.8705 -1.7417 30 6 0.6769 -2.5669 -1.5823 31 1 -0.4850 0.8401 0.0004 32 1 0.4525 -2.5470 0.5604 33 1 2.6551 -3.5981 1.0466 34 1 3.0172 -3.6255 -0.6963 35 1 0.7198 -5.0636 0.7104 36 1 2.1506 -5.8201 -0.0334 37 1 -0.2129 -5.2594 -3.7084 38 1 1.1081 -8.5001 -2.9775 39 1 1.6581 -10.1794 -4.6849 40 1 -0.7597 -9.2544 -8.5999 41 1 -0.3863 -11.1197 -10.1618 42 1 1.7741 -11.3443 -11.3195 43 1 3.5681 -9.7089 -10.9134 44 1 3.1993 -7.8350 -9.3607 45 1 0.4232 -5.6759 -6.1296 46 1 -0.4340 -3.9728 -2.7753 47 1 -0.9684 -3.8588 -1.0786 48 1 0.0100 -1.7202 -1.7448 49 1 1.4861 -2.5379 -2.3121 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097237816.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:46 Heat of formation + Delta-G solvation = 17.734101 kcal Electronic energy + Delta-G solvation = -31801.488644 eV Core-core repulsion = 27501.581549 eV Total energy + Delta-G solvation = -4299.907096 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.35509 -40.58683 -39.30480 -37.83688 -37.09538 -35.24403 -33.67273 -31.74700 -31.36851 -31.25131 -30.47607 -30.07998 -29.67503 -26.34686 -24.40675 -23.70434 -23.22741 -22.98867 -22.61192 -21.88170 -20.56393 -19.33259 -19.13145 -17.97097 -17.50338 -16.64931 -16.40706 -16.35143 -16.09806 -15.97751 -15.41003 -15.19967 -14.99196 -14.55533 -14.35947 -14.20618 -13.96987 -13.86262 -13.74988 -13.26683 -13.05670 -12.84164 -12.78047 -12.62693 -12.45759 -12.17745 -11.93172 -11.77154 -11.50219 -11.28205 -11.00408 -10.98493 -10.72881 -10.53252 -10.35602 -10.15580 -9.73252 -9.53987 -9.26827 -9.21399 -9.11715 -9.06676 -8.85827 -8.59839 -8.45084 -8.13742 -6.13248 -4.15628 0.82082 1.02348 1.07802 1.20175 2.41076 2.90947 3.15205 3.23630 3.31770 3.34966 3.60598 3.71655 3.85390 4.21025 4.35757 4.60458 4.60767 4.76471 4.82106 4.96361 5.07056 5.09224 5.15190 5.21576 5.23403 5.33849 5.51396 5.59928 5.66711 5.74504 5.75121 5.88185 5.98371 6.02734 6.03996 6.05850 6.10005 6.12945 6.17129 6.30961 6.46763 6.48962 6.64763 6.68879 6.83030 6.94081 6.96560 7.15904 7.28427 7.53860 7.77923 7.80495 7.86810 7.89614 8.30846 8.50865 8.88582 9.49208 10.95371 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.016559 B = 0.001758 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.553737 B =15922.370625 C =16882.143555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.064 3.936 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.047 3.953 10 C -0.125 4.125 11 C 0.128 3.872 12 N -0.608 5.608 13 C 0.707 3.293 14 O -0.579 6.579 15 N -0.681 5.681 16 C 0.252 3.748 17 C -0.214 4.214 18 C 0.152 3.848 19 N -0.546 5.546 20 C 0.331 3.669 21 O -0.252 6.252 22 C 0.103 3.897 23 C -0.117 4.117 24 C -0.108 4.108 25 C -0.121 4.121 26 C -0.108 4.108 27 C -0.117 4.117 28 C -0.225 4.225 29 C 0.106 3.894 30 C -0.119 4.119 31 H 0.261 0.739 32 H 0.037 0.963 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.412 0.588 38 H 0.167 0.833 39 H 0.162 0.838 40 H 0.124 0.876 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.144 0.856 46 H 0.057 0.943 47 H 0.070 0.930 48 H 0.087 0.913 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.607 -18.785 -16.551 25.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.074 0.926 9 C 0.029 3.971 10 C -0.163 4.163 11 C 0.006 3.994 12 N -0.343 5.343 13 C 0.409 3.591 14 O -0.457 6.457 15 N -0.329 5.329 16 C 0.146 3.854 17 C -0.237 4.237 18 C -0.003 4.003 19 N -0.270 5.270 20 C 0.154 3.846 21 O -0.158 6.158 22 C 0.061 3.939 23 C -0.135 4.135 24 C -0.126 4.126 25 C -0.140 4.140 26 C -0.126 4.126 27 C -0.135 4.135 28 C -0.249 4.249 29 C -0.016 4.016 30 C -0.157 4.157 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.252 0.748 38 H 0.185 0.815 39 H 0.179 0.821 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.146 0.854 45 H 0.162 0.838 46 H 0.075 0.925 47 H 0.089 0.911 48 H 0.105 0.895 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.139 -19.630 -16.912 25.936 hybrid contribution -0.103 2.092 0.385 2.129 sum -1.242 -17.539 -16.526 24.130 Atomic orbital electron populations 1.69935 1.05874 1.26631 1.50369 1.24959 0.94821 0.99089 0.94924 0.86642 0.80084 0.83671 0.78006 1.20739 1.21263 1.19890 1.21163 0.93694 0.90697 1.49760 0.92648 1.18644 0.94252 0.91869 0.92356 1.22043 0.98989 0.94103 1.01149 1.21706 0.96031 0.99916 0.81769 1.47505 1.48736 1.19948 1.18125 1.15780 0.79830 0.83618 0.79882 1.90816 1.46017 1.32502 1.76392 1.42794 1.48974 1.29502 1.11678 1.17438 0.92633 0.88145 0.87154 1.22538 1.05737 0.91632 1.03782 1.22306 0.92817 0.99354 0.85871 1.67346 1.20625 1.19175 1.19873 1.19376 0.92548 0.89505 0.83153 1.84574 1.85639 1.33450 1.12144 1.18507 0.93803 0.89289 0.92293 1.21308 0.99039 0.94166 0.99034 1.21002 0.97623 0.97476 0.96472 1.21206 0.93561 0.99313 0.99873 1.21008 0.99378 0.94141 0.98055 1.21202 0.95404 0.98591 0.98343 1.20510 1.13099 1.00985 0.90336 1.21894 0.93474 0.87725 0.98513 1.21900 0.99128 0.93872 1.00843 0.92962 0.94484 0.91655 0.92976 0.91849 0.90001 0.74830 0.81534 0.82104 0.85768 0.85553 0.85722 0.85401 0.85367 0.83819 0.92525 0.91149 0.89470 0.93868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.83 12.17 55.43 0.67 -23.16 16 2 C 0.06 1.66 5.24 -17.82 -0.09 1.57 16 3 Si 0.89 20.40 29.54 -169.99 -5.02 15.38 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -13.24 8.46 -34.44 -0.29 -13.53 16 8 H 0.06 1.44 7.76 -52.48 -0.41 1.03 16 9 C 0.05 1.06 1.92 -91.73 -0.18 0.89 16 10 C -0.12 -2.39 5.30 -26.61 -0.14 -2.53 16 11 C 0.13 2.15 6.42 -3.71 -0.02 2.13 16 12 N -0.61 -9.95 2.98 -178.76 -0.53 -10.48 16 13 C 0.71 11.46 8.19 -86.92 -0.71 10.75 16 14 O -0.58 -10.58 12.84 5.29 0.07 -10.51 16 15 N -0.68 -9.10 5.26 -14.09 -0.07 -9.17 16 16 C 0.25 3.37 6.46 -83.52 -0.54 2.83 16 17 C -0.21 -2.84 8.87 -39.24 -0.35 -3.19 16 18 C 0.15 1.81 11.17 -17.62 -0.20 1.62 16 19 N -0.55 -7.18 9.19 -13.41 -0.12 -7.30 16 20 C 0.33 4.37 7.37 -17.16 -0.13 4.24 16 21 O -0.25 -3.24 9.96 -2.91 -0.03 -3.27 16 22 C 0.10 1.19 5.10 -39.20 -0.20 0.99 16 23 C -0.12 -1.19 9.70 -39.43 -0.38 -1.57 16 24 C -0.11 -0.88 10.04 -39.60 -0.40 -1.27 16 25 C -0.12 -0.91 10.04 -39.56 -0.40 -1.31 16 26 C -0.11 -0.87 10.04 -39.61 -0.40 -1.27 16 27 C -0.12 -1.19 9.99 -39.43 -0.39 -1.58 16 28 C -0.23 -2.81 9.98 -39.09 -0.39 -3.20 16 29 C 0.11 1.68 6.40 -3.93 -0.03 1.66 16 30 C -0.12 -2.39 5.21 -26.84 -0.14 -2.53 16 31 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 32 H 0.04 0.91 8.06 -51.93 -0.42 0.49 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.08 1.37 7.04 -51.93 -0.37 1.00 16 37 H 0.41 4.58 6.28 -40.82 -0.26 4.32 16 38 H 0.17 2.40 5.73 -52.48 -0.30 2.10 16 39 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 44 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 45 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 46 H 0.06 0.72 5.58 -51.93 -0.29 0.43 16 47 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 48 H 0.09 1.96 6.95 -51.93 -0.36 1.59 16 49 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 401.98 15.07 6.06 6.06 Total: -1.00 -29.89 401.98 -10.96 -40.86 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -6.61 Total: 6.90 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -5.37 Total: -5.31 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: -0.05 Total: -50.10 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.04 Total: -13.78 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.89 -10.96 -40.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097237816.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.589 kcal (2) G-P(sol) polarization free energy of solvation -29.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds