Wall clock time and date at job start Tue Mar 31 2020 04:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46819 * 2 1 4 4 C 1.46505 * 119.99616 * 269.99845 * 3 2 1 5 5 C 1.50707 * 109.46732 * 270.00001 * 4 3 2 6 6 H 1.07994 * 120.00357 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99471 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00107 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00464 * 359.97438 * 7 5 4 10 10 H 1.48509 * 109.47096 * 89.99945 * 9 7 5 11 11 H 1.48491 * 109.47492 * 210.00152 * 9 7 5 12 12 H 1.48505 * 109.46739 * 330.00303 * 9 7 5 13 13 C 1.34773 * 120.00304 * 90.00244 * 3 2 1 14 14 O 1.21278 * 120.00044 * 179.97438 * 13 3 2 15 15 C 1.50697 * 119.99900 * 359.97438 * 13 3 2 16 16 N 1.46500 * 109.47097 * 180.02562 * 15 13 3 17 17 N 1.39880 * 125.46854 * 269.96059 * 16 15 13 18 18 C 1.30235 * 110.07699 * 180.02562 * 17 16 15 19 19 C 1.45949 * 107.79665 * 0.02562 * 18 17 16 20 20 C 1.39967 * 133.94156 * 180.02562 * 19 18 17 21 21 C 1.36425 * 119.79829 * 180.02562 * 20 19 18 22 22 N 1.48022 * 119.67296 * 179.97438 * 21 20 19 23 23 O 1.21800 * 120.00163 * 179.97438 * 22 21 20 24 24 O 1.21808 * 120.00081 * 359.97438 * 22 21 20 25 25 C 1.38974 * 120.65265 * 359.94985 * 21 20 19 26 26 C 1.37685 * 120.64996 * 0.02749 * 25 21 20 27 27 Cl 1.73602 * 120.13801 * 180.02562 * 26 25 21 28 28 C 1.37065 * 125.46985 * 90.00678 * 16 15 13 29 29 H 1.09002 * 109.47371 * 300.00042 * 1 2 3 30 30 H 1.08996 * 109.47183 * 60.00209 * 1 2 3 31 31 H 1.09000 * 109.46883 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47371 * 239.99958 * 2 1 3 33 33 H 1.08996 * 109.47183 * 119.99790 * 2 1 3 34 34 H 1.08991 * 109.47161 * 30.00091 * 4 3 2 35 35 H 1.08996 * 109.46674 * 150.00570 * 4 3 2 36 36 H 0.97006 * 120.00564 * 179.97438 * 8 7 5 37 37 H 1.09004 * 109.46896 * 60.00970 * 15 13 3 38 38 H 1.08993 * 109.47594 * 300.00937 * 15 13 3 39 39 H 1.08001 * 126.10318 * 180.02562 * 18 17 16 40 40 H 1.08003 * 120.09783 * 0.02562 * 20 19 18 41 41 H 1.07995 * 119.67673 * 180.30400 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1493 2.3904 -2.8775 8 7 5.3912 2.1834 -3.2574 9 14 3.0130 3.4358 -3.9289 10 1 3.1156 4.8560 -3.5071 11 1 3.4067 3.3135 -5.3554 12 1 1.6135 2.9690 -3.7597 13 6 2.2429 2.0166 1.1671 14 8 2.6476 3.1599 1.1671 15 6 1.9913 1.3065 2.4722 16 7 2.3082 2.2042 3.5857 17 7 3.5577 2.3214 4.2036 18 6 3.5033 3.2058 5.1580 19 6 2.1417 3.7293 5.2040 20 6 1.4933 4.6808 5.9998 21 6 0.1738 4.9555 5.7887 22 7 -0.5093 5.9618 6.6323 23 8 -1.6871 6.2120 6.4487 24 8 0.1064 6.5398 7.5101 25 6 -0.5353 4.3001 4.7891 26 6 0.0801 3.3605 3.9928 27 17 -0.8182 2.5504 2.7476 28 6 1.4277 3.0636 4.1899 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6877 -2.0284 35 1 2.0955 3.1410 -1.1385 36 1 5.7173 2.5738 -4.0834 37 1 2.6214 0.4188 2.5302 38 1 0.9434 1.0125 2.5298 39 1 4.3200 3.4995 5.8008 40 1 2.0360 5.1960 6.7786 41 1 -1.5781 4.5334 4.6325 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097375574.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:37 Heat of formation + Delta-G solvation = 38.505006 kcal Electronic energy + Delta-G solvation = -30589.678075 eV Core-core repulsion = 26114.291297 eV Total energy + Delta-G solvation = -4475.386778 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 366.093 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.40167 -42.74573 -40.88309 -38.96440 -37.89773 -37.67357 -37.18916 -35.12511 -34.65296 -32.59236 -31.96897 -31.73060 -30.23084 -28.60810 -27.09120 -24.79724 -24.63960 -24.33274 -23.39359 -22.40750 -20.54752 -20.29061 -19.80119 -19.19455 -18.79369 -18.63790 -18.39975 -17.75574 -17.19290 -16.76816 -16.47030 -16.38130 -16.27092 -15.80150 -15.06119 -15.01641 -14.91477 -14.73807 -14.55756 -14.13815 -14.07466 -13.76288 -13.45042 -13.23094 -13.19884 -12.99542 -12.70456 -12.65315 -12.57513 -12.49627 -12.28159 -12.22362 -12.12677 -12.03751 -12.02189 -11.80499 -11.64848 -10.95426 -10.88790 -10.40967 -9.59722 -9.50945 -8.39484 -6.44888 -1.25643 -0.76175 0.12678 0.15666 0.61847 0.82307 1.10291 1.27423 1.31260 1.39098 1.49288 1.94323 2.12230 2.24947 2.77844 2.94768 3.02281 3.22003 3.31970 3.36508 3.47139 3.76030 3.83504 3.91742 4.05204 4.11189 4.25558 4.28771 4.41894 4.50169 4.66757 4.69234 4.78890 4.88098 4.91586 5.06069 5.23414 5.26825 5.29863 5.39220 5.50056 6.15042 6.16626 6.47574 6.48844 6.56970 7.08418 7.22417 8.77310 Molecular weight = 366.09amu Principal moments of inertia in cm(-1) A = 0.012961 B = 0.002834 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.731706 B = 9877.813182 C =10060.748016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.090 3.910 3 N -0.591 5.591 4 C 0.229 3.771 5 C -0.536 4.536 6 H 0.030 0.970 7 C 0.014 3.986 8 N -0.943 5.943 9 Si 0.943 3.057 10 H -0.279 1.279 11 H -0.274 1.274 12 H -0.237 1.237 13 C 0.489 3.511 14 O -0.579 6.579 15 C 0.115 3.885 16 N -0.377 5.377 17 N -0.266 5.266 18 C 0.122 3.878 19 C -0.182 4.182 20 C 0.071 3.929 21 C -0.090 4.090 22 N 0.042 4.958 23 O -0.186 6.186 24 O -0.160 6.160 25 C -0.007 4.007 26 C -0.065 4.065 27 Cl -0.034 7.034 28 C 0.166 3.834 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.053 0.947 35 H 0.015 0.985 36 H 0.269 0.731 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.260 0.740 40 H 0.199 0.801 41 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.673 -3.161 19.715 24.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.032 4.032 3 N -0.322 5.322 4 C 0.107 3.893 5 C -0.574 4.574 6 H 0.049 0.951 7 C -0.185 4.185 8 N -0.583 5.583 9 Si 0.766 3.234 10 H -0.205 1.205 11 H -0.199 1.199 12 H -0.160 1.160 13 C 0.275 3.725 14 O -0.459 6.459 15 C -0.009 4.009 16 N -0.159 5.159 17 N -0.075 5.075 18 C -0.076 4.076 19 C -0.191 4.191 20 C 0.050 3.950 21 C -0.176 4.176 22 N 0.558 4.442 23 O -0.396 6.396 24 O -0.377 6.377 25 C -0.029 4.029 26 C -0.096 4.096 27 Cl -0.005 7.005 28 C 0.045 3.955 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.120 0.880 32 H 0.102 0.898 33 H 0.117 0.883 34 H 0.071 0.929 35 H 0.033 0.967 36 H 0.078 0.922 37 H 0.164 0.836 38 H 0.165 0.835 39 H 0.275 0.725 40 H 0.216 0.784 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -12.392 -4.112 18.224 22.419 hybrid contribution -0.516 1.220 -0.711 1.503 sum -12.908 -2.892 17.513 21.948 Atomic orbital electron populations 1.22202 0.93929 1.04115 1.01841 1.21930 0.95646 0.80795 1.04794 1.48008 1.63494 1.15287 1.05427 1.19312 0.95021 0.92838 0.82170 1.21517 0.96968 1.32215 1.06743 0.95121 1.25801 0.96620 0.97105 0.98935 1.70037 1.17352 1.46425 1.24480 0.85791 0.80647 0.78955 0.78035 1.20533 1.19866 1.15964 1.21123 0.77974 0.86936 0.86425 1.90692 1.47255 1.20270 1.87637 1.22005 1.06348 0.92050 0.80527 1.48103 1.05566 1.34022 1.28239 1.76884 1.00436 1.20967 1.09208 1.26120 0.95319 0.91250 0.94899 1.19750 0.95515 1.03405 1.00436 1.20476 0.90320 0.89465 0.94772 1.20161 0.94641 1.01342 1.01431 1.43464 1.00789 1.00043 0.99906 1.94557 0.99665 1.69800 1.75571 1.94527 1.66752 1.50789 1.25615 1.20563 1.02189 0.90309 0.89819 1.19405 0.89405 1.02718 0.98085 1.98396 1.73695 1.77426 1.50964 1.18993 0.91179 0.91638 0.93715 0.93019 0.92989 0.88021 0.89818 0.88332 0.92915 0.96682 0.92216 0.83555 0.83459 0.72482 0.78387 0.80262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 10.24 71.98 0.74 -2.39 16 2 C 0.09 2.32 5.93 86.38 0.51 2.83 16 3 N -0.59 -22.28 2.46 -826.15 -2.03 -24.31 16 4 C 0.23 10.73 4.23 85.63 0.36 11.09 16 5 C -0.54 -30.80 9.94 25.60 0.25 -30.55 16 6 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 7 C 0.01 0.80 5.47 84.65 0.46 1.27 16 8 N -0.94 -59.00 13.96 21.45 0.30 -58.70 16 9 Si 0.94 43.86 27.47 68.60 1.88 45.74 16 10 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 12 H -0.24 -9.79 6.54 99.48 0.65 -9.14 16 13 C 0.49 18.63 7.74 87.66 0.68 19.31 16 14 O -0.58 -28.27 16.01 -3.02 -0.05 -28.32 16 15 C 0.12 3.06 4.87 85.63 0.42 3.47 16 16 N -0.38 -10.38 3.14 -343.30 -1.08 -11.45 16 17 N -0.27 -7.06 12.40 -53.08 -0.66 -7.71 16 18 C 0.12 2.15 12.28 86.93 1.07 3.22 16 19 C -0.18 -3.49 6.36 -20.25 -0.13 -3.62 16 20 C 0.07 1.10 9.55 22.27 0.21 1.31 16 21 C -0.09 -1.71 6.81 36.13 0.25 -1.47 16 22 N 0.04 0.92 4.45 -47.05 -0.21 0.71 16 23 O -0.19 -4.52 18.42 18.89 0.35 -4.18 16 24 O -0.16 -3.55 18.39 18.88 0.35 -3.20 16 25 C -0.01 -0.13 9.30 22.32 0.21 0.08 16 26 C -0.06 -1.43 6.34 22.42 0.14 -1.29 16 27 Cl -0.03 -0.72 25.46 -2.72 -0.07 -0.79 16 28 C 0.17 4.05 6.84 39.22 0.27 4.32 16 29 H 0.05 0.93 6.51 -2.39 -0.02 0.92 16 30 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 2.32 8.07 -2.39 -0.02 2.31 16 33 H 0.10 1.89 6.44 -2.39 -0.02 1.88 16 34 H 0.05 2.26 7.13 -2.39 -0.02 2.24 16 35 H 0.02 0.77 6.85 -2.39 -0.02 0.76 16 36 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16 37 H 0.15 3.23 7.40 -2.38 -0.02 3.22 16 38 H 0.15 3.05 4.84 -2.39 -0.01 3.03 16 39 H 0.26 1.64 8.06 -2.91 -0.02 1.62 16 40 H 0.20 1.72 7.56 -2.91 -0.02 1.70 16 41 H 0.18 2.92 7.58 -2.91 -0.02 2.90 16 Total: -1.00 -83.24 371.90 5.28 -77.96 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: 1.05 Total: 6.64 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 5.44 Total: 7.60 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -3.67 Total: -101.46 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: 0.65 Total: -35.69 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.88 Total: 45.74 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.07 Total: -0.79 kcal Total: -83.24 5.28 -77.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097375574.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.467 kcal (2) G-P(sol) polarization free energy of solvation -83.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds