Wall clock time and date at job start Tue Mar 31 2020 06:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35722 * 117.00303 * 2 1 4 4 C 1.38915 * 119.61690 * 179.97438 * 3 2 1 5 5 C 1.38313 * 119.18221 * 179.97438 * 4 3 2 6 6 C 1.39345 * 118.42819 * 0.02562 * 5 4 3 7 7 N 1.40380 * 120.42132 * 179.97438 * 6 5 4 8 8 C 1.33875 * 122.76283 * 293.28751 * 7 6 5 9 9 O 1.21229 * 125.39686 * 359.97438 * 8 7 6 10 10 C 1.51308 * 109.20750 * 179.97438 * 8 7 6 11 11 C 1.54234 * 103.55575 * 0.02562 * 10 8 7 12 12 H 1.09003 * 110.60472 * 241.32757 * 11 10 8 13 13 N 1.46495 * 110.60614 * 118.51700 * 11 10 8 14 14 C 1.38858 * 119.99969 * 157.15088 * 13 11 10 15 15 C 1.39563 * 119.84146 * 359.71868 * 14 13 11 16 16 C 1.36342 * 120.16044 * 179.72182 * 15 14 13 17 17 C 1.40880 * 119.83611 * 0.55390 * 16 15 14 18 18 C 1.41142 * 120.15897 * 179.69810 * 17 16 15 19 19 H 1.07996 * 119.99988 * 158.39934 * 18 17 16 20 20 C 1.39867 * 119.99840 * 338.40634 * 18 17 16 21 21 N 1.30906 * 119.99728 * 327.22151 * 20 18 17 22 22 Si 1.86791 * 120.00213 * 147.22571 * 20 18 17 23 23 H 1.48492 * 109.47501 * 84.99235 * 22 20 18 24 24 H 1.48503 * 109.47235 * 204.99527 * 22 20 18 25 25 H 1.48500 * 109.47279 * 324.99048 * 22 20 18 26 26 C 1.40888 * 119.69224 * 359.72275 * 17 16 15 27 27 C 1.36343 * 119.83121 * 359.97438 * 26 17 16 28 28 C 1.34225 * 122.70773 * 113.17596 * 7 6 5 29 29 O 1.21228 * 125.59125 * 0.02776 * 28 7 6 30 30 C 1.38626 * 119.16377 * 0.27279 * 6 5 4 31 31 N 1.31938 * 120.73854 * 359.40945 * 30 6 5 32 32 H 1.09001 * 109.47385 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47115 * 300.00319 * 1 2 3 34 34 H 1.09003 * 109.46630 * 60.00072 * 1 2 3 35 35 H 1.07998 * 120.41117 * 359.97438 * 4 3 2 36 36 H 1.07999 * 120.78642 * 179.97438 * 5 4 3 37 37 H 1.08994 * 110.60881 * 241.48335 * 10 8 7 38 38 H 1.09002 * 110.74007 * 118.57728 * 10 8 7 39 39 H 0.97005 * 120.00472 * 337.14485 * 13 11 10 40 40 H 1.08000 * 119.92145 * 359.97438 * 15 14 13 41 41 H 1.08002 * 120.08302 * 180.27497 * 16 15 14 42 42 H 0.96997 * 120.00325 * 180.02562 * 21 20 18 43 43 H 1.07994 * 120.08427 * 180.02562 * 26 17 16 44 44 H 1.08003 * 119.91806 * 180.02562 * 27 26 17 45 45 H 1.07997 * 119.62947 * 179.70244 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 3.4330 1.2726 0.0005 5 6 4.0516 2.5097 0.0000 6 6 3.2523 3.6511 -0.0005 7 7 3.8361 4.9277 -0.0006 8 6 4.5418 5.4017 1.0337 9 8 4.7580 4.8069 2.0677 10 6 5.0267 6.7974 0.7076 11 6 4.4724 7.0508 -0.7092 12 1 5.2861 7.2166 -1.4154 13 7 3.5534 8.1916 -0.7069 14 6 3.3108 8.8901 -1.8822 15 6 3.9488 8.5062 -3.0626 16 6 3.7111 9.1839 -4.2215 17 6 2.8278 10.2814 -4.2231 18 6 2.5816 10.9918 -5.4176 19 1 1.6827 11.5815 -5.5196 20 6 3.5018 10.9318 -6.4692 21 7 4.7804 10.8138 -6.2141 22 14 2.9065 11.0203 -8.2375 23 1 2.7561 12.4420 -8.6387 24 1 3.8942 10.3570 -9.1261 25 1 1.5958 10.3319 -8.3536 26 6 2.1917 10.6670 -3.0266 27 6 2.4342 9.9761 -1.8764 28 6 3.7339 5.7720 -1.0390 29 8 3.1444 5.5487 -2.0745 30 6 1.8732 3.5100 0.0053 31 7 1.3177 2.3133 -0.0005 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 4.0216 0.3671 0.0014 36 1 5.1287 2.5891 0.0008 37 1 6.1160 6.8345 0.7061 38 1 4.6202 7.5219 1.4133 39 1 3.1142 8.4590 0.1156 40 1 4.6295 7.6676 -3.0589 41 1 4.2021 8.8829 -5.1352 42 1 5.4186 10.7725 -6.9433 43 1 1.5131 11.5071 -3.0206 44 1 1.9470 10.2702 -0.9585 45 1 1.2466 4.3896 0.0098 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000100862386.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:27 Heat of formation + Delta-G solvation = -15.014184 kcal Electronic energy + Delta-G solvation = -31852.107877 eV Core-core repulsion = 27414.947615 eV Total energy + Delta-G solvation = -4437.160262 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.136 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.41629 -40.72515 -38.79503 -38.30382 -37.80597 -36.08846 -35.35019 -33.59392 -32.78671 -31.79853 -29.71916 -29.54650 -28.37168 -27.46392 -25.92708 -24.47328 -24.00709 -23.60347 -22.46045 -21.06017 -20.55774 -19.81970 -18.79305 -18.06071 -17.79393 -17.31875 -16.95195 -16.49730 -16.30020 -16.06487 -15.51702 -15.06162 -15.02590 -14.92777 -14.60669 -14.24898 -13.99368 -13.92069 -13.88385 -13.72364 -13.40254 -13.07290 -12.85589 -12.48297 -12.31258 -12.20122 -12.02926 -11.80424 -11.60920 -11.58354 -11.07928 -10.95886 -10.93176 -10.72362 -10.58038 -10.40171 -10.17546 -9.87377 -9.79495 -9.37911 -9.26537 -8.78317 -8.64371 -7.56176 -6.93528 -6.59278 -4.08492 0.65523 0.81623 1.36368 2.17245 2.48466 2.73851 2.85214 3.04302 3.10937 3.13599 3.28917 3.32231 3.75816 3.92399 3.97996 4.07497 4.17663 4.26914 4.42498 4.57730 4.60980 4.68262 4.86011 4.94833 5.01425 5.04085 5.26343 5.32685 5.34694 5.41875 5.53694 5.71035 5.74277 5.99051 6.16598 6.21612 6.53759 6.71300 6.81231 6.84783 7.09727 7.13113 7.22958 7.38209 7.40144 7.56491 7.67564 7.69639 8.06741 8.12299 8.32643 8.45180 8.66327 8.94987 9.05704 10.15513 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.012053 B = 0.002223 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.609932 B =12592.622986 C =13874.565568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.305 6.305 3 C 0.326 3.674 4 C -0.179 4.179 5 C -0.022 4.022 6 C 0.025 3.975 7 N -0.526 5.526 8 C 0.532 3.468 9 O -0.480 6.480 10 C -0.160 4.160 11 C 0.143 3.857 12 H 0.129 0.871 13 N -0.732 5.732 14 C 0.059 3.941 15 C -0.133 4.133 16 C -0.145 4.145 17 C 0.091 3.909 18 C -0.474 4.474 19 H 0.077 0.923 20 C 0.089 3.911 21 N -0.779 5.779 22 Si 0.891 3.109 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.260 1.260 26 C -0.200 4.200 27 C -0.134 4.134 28 C 0.499 3.501 29 O -0.442 6.442 30 C 0.168 3.832 31 N -0.527 5.527 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.392 0.608 40 H 0.087 0.913 41 H 0.105 0.895 42 H 0.280 0.720 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.523 -15.395 13.217 20.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.212 6.212 3 C 0.147 3.853 4 C -0.200 4.200 5 C -0.049 4.049 6 C -0.067 4.067 7 N -0.270 5.270 8 C 0.321 3.679 9 O -0.351 6.351 10 C -0.200 4.200 11 C 0.030 3.970 12 H 0.146 0.854 13 N -0.370 5.370 14 C -0.036 4.036 15 C -0.154 4.154 16 C -0.165 4.165 17 C 0.088 3.912 18 C -0.503 4.503 19 H 0.095 0.905 20 C -0.131 4.131 21 N -0.403 5.403 22 Si 0.714 3.286 23 H -0.195 1.195 24 H -0.202 1.202 25 H -0.184 1.184 26 C -0.221 4.221 27 C -0.156 4.156 28 C 0.285 3.715 29 O -0.306 6.306 30 C 0.011 3.989 31 N -0.251 5.251 32 H 0.116 0.884 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.168 0.832 36 H 0.164 0.836 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.227 0.773 40 H 0.105 0.895 41 H 0.123 0.877 42 H 0.091 0.909 43 H 0.111 0.889 44 H 0.105 0.895 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.165 -16.264 12.945 20.788 hybrid contribution 0.245 0.212 -0.616 0.696 sum 0.080 -16.052 12.329 20.241 Atomic orbital electron populations 1.22923 0.76821 1.03150 1.02811 1.86251 1.23276 1.24167 1.87504 1.19928 0.89454 0.84808 0.91080 1.20948 0.91930 0.99049 1.08046 1.21395 1.00768 0.90274 0.92448 1.18530 0.93190 0.84967 1.10007 1.44722 1.49034 1.14200 1.18998 1.20936 0.76211 0.88904 0.81801 1.90776 1.55079 1.64449 1.24826 1.22837 1.05127 0.94017 0.98055 1.21212 0.93870 0.84941 0.96959 0.85391 1.43580 1.52065 1.31301 1.10008 1.17127 1.03529 0.97188 0.85719 1.19968 1.02028 1.00838 0.92601 1.20645 1.02743 0.96805 0.96321 1.17473 0.90871 0.91048 0.91827 1.19326 1.05677 1.27422 0.97879 0.90472 1.25832 0.93931 0.91968 1.01370 1.69960 1.02040 1.33253 1.35029 0.86626 0.80372 0.79273 0.82291 1.19481 1.20215 1.18382 1.20456 1.07122 1.02037 0.92447 1.19767 1.01009 0.97363 0.97449 1.22703 0.80638 0.86178 0.81987 1.90814 1.38322 1.77380 1.24131 1.22420 0.91152 0.94271 0.91078 1.67395 1.40085 0.98215 1.19368 0.88415 0.92101 0.91970 0.83190 0.83596 0.85131 0.85419 0.77332 0.89541 0.87685 0.90907 0.88916 0.89462 0.81997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.38 101.05 1.05 1.35 16 2 O -0.31 -3.24 10.48 -18.87 -0.20 -3.44 16 3 C 0.33 3.85 7.49 -17.13 -0.13 3.72 16 4 C -0.18 -1.82 10.04 -39.30 -0.39 -2.22 16 5 C -0.02 -0.24 9.94 -39.14 -0.39 -0.63 16 6 C 0.02 0.31 4.98 -83.39 -0.42 -0.11 16 7 N -0.53 -6.40 2.65 -59.19 -0.16 -6.55 16 8 C 0.53 5.81 7.96 -11.09 -0.09 5.72 16 9 O -0.48 -6.39 17.60 5.60 0.10 -6.29 16 10 C -0.16 -1.31 6.79 -26.94 -0.18 -1.50 16 11 C 0.14 1.72 3.07 -68.14 -0.21 1.51 16 12 H 0.13 1.56 6.46 -51.93 -0.34 1.22 16 13 N -0.73 -10.65 5.28 -52.24 -0.28 -10.93 16 14 C 0.06 1.17 6.67 -83.69 -0.56 0.61 16 15 C -0.13 -2.95 9.14 -39.77 -0.36 -3.31 16 16 C -0.15 -3.69 8.74 -39.27 -0.34 -4.03 16 17 C 0.09 2.38 5.58 -106.79 -0.60 1.78 16 18 C -0.47 -12.54 8.93 -37.87 -0.34 -12.88 16 19 H 0.08 1.98 8.02 -52.49 -0.42 1.56 16 20 C 0.09 2.23 4.76 -17.34 -0.08 2.15 16 21 N -0.78 -19.90 11.78 55.54 0.65 -19.25 16 22 Si 0.89 18.60 29.66 -169.99 -5.04 13.56 16 23 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 24 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 25 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 26 C -0.20 -4.77 9.74 -39.26 -0.38 -5.16 16 27 C -0.13 -2.82 9.82 -39.77 -0.39 -3.21 16 28 C 0.50 7.06 7.62 -10.93 -0.08 6.97 16 29 O -0.44 -8.12 17.63 5.60 0.10 -8.02 16 30 C 0.17 2.18 10.97 -17.36 -0.19 1.98 16 31 N -0.53 -6.77 9.20 -13.19 -0.12 -6.90 16 32 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 34 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 35 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.13 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.13 0.85 7.68 -51.93 -0.40 0.45 16 39 H 0.39 4.77 8.35 -40.82 -0.34 4.43 16 40 H 0.09 1.75 6.20 -52.49 -0.33 1.42 16 41 H 0.11 2.77 6.51 -52.49 -0.34 2.43 16 42 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 43 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 44 H 0.09 1.57 8.06 -52.48 -0.42 1.15 16 45 H 0.16 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 392.49 15.07 5.91 5.91 Total: -1.00 -32.19 392.49 -8.21 -40.40 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -5.10 Total: 8.74 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -4.09 Total: -7.23 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: 0.10 Total: -43.63 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: 0.00 Total: -17.75 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.04 Total: 13.56 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.19 -8.21 -40.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100862386.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.383 kcal (2) G-P(sol) polarization free energy of solvation -32.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds