Wall clock time and date at job start Tue Mar 31 2020 05:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35950 * 117.00169 * 2 1 4 4 C 1.38046 * 119.99711 * 0.29325 * 3 2 1 5 5 C 1.40048 * 119.83214 * 180.23414 * 4 3 2 6 6 C 1.46859 * 120.07851 * 179.77032 * 5 4 3 7 7 C 1.35257 * 119.99924 * 317.55235 * 6 5 4 8 8 C 1.50784 * 120.53274 * 2.07517 * 7 6 5 9 9 C 1.52299 * 110.46024 * 106.54477 * 8 7 6 10 10 O 1.42088 * 111.79224 * 44.99515 * 9 8 7 11 11 C 1.35539 * 117.95633 * 45.20304 * 10 9 8 12 12 C 1.38502 * 120.88535 * 103.79740 * 11 10 9 13 13 C 1.38163 * 119.95598 * 179.97438 * 12 11 10 14 14 C 1.38563 * 120.54226 * 0.09110 * 13 12 11 15 15 C 1.37924 * 120.30065 * 359.93826 * 14 13 12 16 16 C 1.39355 * 119.67407 * 0.02604 * 15 14 13 17 17 C 1.42655 * 120.52581 * 181.80343 * 7 6 5 18 18 O 1.21785 * 120.87651 * 3.74677 * 17 7 6 19 19 C 1.40095 * 119.83703 * 359.49305 * 5 4 3 20 20 C 1.37615 * 119.99488 * 0.25365 * 19 5 4 21 21 C 1.39083 * 120.16604 * 359.97438 * 20 19 5 22 22 O 1.35591 * 119.91920 * 180.02562 * 21 20 19 23 23 C 1.34738 * 116.99826 * 5.61617 * 22 21 20 24 24 H 1.08003 * 119.99997 * 354.90290 * 23 22 21 25 25 C 1.38737 * 119.99954 * 174.90234 * 23 22 21 26 26 N 1.31496 * 120.00387 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 120.00057 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47169 * 0.02562 * 27 25 23 29 29 H 1.48495 * 109.47378 * 120.00078 * 27 25 23 30 30 H 1.48504 * 109.47248 * 240.00359 * 27 25 23 31 31 H 1.08995 * 109.46569 * 60.00611 * 1 2 3 32 32 H 1.08999 * 109.46704 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47072 * 300.00641 * 1 2 3 34 34 H 1.08001 * 120.08193 * 359.97438 * 4 3 2 35 35 H 1.08000 * 119.99829 * 137.55603 * 6 5 4 36 36 H 1.08997 * 109.30848 * 226.85642 * 8 7 6 37 37 H 1.09005 * 109.30383 * 346.24697 * 8 7 6 38 38 H 1.08997 * 109.01456 * 165.58886 * 9 8 7 39 39 H 1.09001 * 109.01538 * 284.48210 * 9 8 7 40 40 H 1.07997 * 120.02135 * 0.02562 * 12 11 10 41 41 H 1.07996 * 119.72550 * 180.02562 * 13 12 11 42 42 H 1.08000 * 119.85161 * 179.97438 * 14 13 12 43 43 H 1.07994 * 120.15958 * 180.02562 * 15 14 13 44 44 H 1.07996 * 120.00380 * 180.27292 * 19 5 4 45 45 H 1.08003 * 119.91667 * 180.02562 * 20 19 5 46 46 H 0.96995 * 120.00652 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2944 2.3690 0.0061 5 6 1.9338 3.6150 0.0011 6 6 1.1392 4.8501 0.0025 7 6 0.0429 4.9498 -0.7834 8 6 -0.4010 3.7840 -1.6305 9 6 -1.6487 3.1410 -1.0394 10 8 -2.6077 4.1133 -0.6471 11 6 -2.8696 5.1297 -1.5047 12 6 -4.0309 5.1418 -2.2594 13 6 -4.2787 6.1878 -3.1273 14 6 -3.3726 7.2286 -3.2526 15 6 -2.2107 7.2330 -2.5095 16 6 -1.9502 6.1837 -1.6302 17 6 -0.7152 6.1577 -0.8197 18 8 -0.3538 7.1412 -0.1991 19 6 3.3332 3.6803 0.0007 20 6 4.0760 2.5218 -0.0001 21 6 3.4409 1.2845 0.0001 22 8 4.1777 0.1462 -0.0002 23 6 5.5131 0.2819 0.1169 24 1 5.9574 1.2663 0.1226 25 6 6.3174 -0.8429 0.2302 26 7 5.7765 -2.0414 0.2228 27 14 8.1687 -0.6547 0.3932 28 1 8.5232 0.7873 0.3756 29 1 8.6168 -1.2584 1.6738 30 1 8.8380 -1.3433 -0.7396 31 1 -0.3632 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 0.2158 2.3140 0.0105 35 1 1.4303 5.6787 0.6310 36 1 -0.6193 4.1340 -2.6393 37 1 0.3990 3.0449 -1.6740 38 1 -2.0952 2.4820 -1.7839 39 1 -1.3653 2.5514 -0.1675 40 1 -4.7425 4.3345 -2.1689 41 1 -5.1856 6.1936 -3.7137 42 1 -3.5774 8.0404 -3.9348 43 1 -1.5063 8.0455 -2.6086 44 1 3.8291 4.6397 0.0013 45 1 5.1548 2.5737 0.0000 46 1 6.3388 -2.8278 0.3016 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000102971167.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:57 Heat of formation + Delta-G solvation = -47.985097 kcal Electronic energy + Delta-G solvation = -32453.522337 eV Core-core repulsion = 28048.065509 eV Total energy + Delta-G solvation = -4405.456829 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.135 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.14913 -39.84474 -38.68530 -37.97092 -37.70120 -36.70033 -34.35838 -32.50792 -31.59946 -31.01866 -30.09287 -29.63026 -28.63596 -26.67444 -25.72861 -24.87307 -24.16229 -22.50701 -21.90685 -21.67513 -20.63152 -19.13065 -18.39311 -17.66263 -17.03389 -16.88413 -16.71061 -16.41024 -16.16754 -15.45925 -15.32637 -15.12055 -14.84089 -14.73157 -14.41014 -14.20348 -14.08173 -13.91559 -13.74261 -13.65053 -13.53717 -12.80346 -12.71823 -12.41663 -12.28982 -12.06904 -11.89664 -11.76609 -11.69210 -11.53315 -11.24331 -11.10135 -11.08450 -10.78070 -10.60439 -10.50009 -10.35066 -9.73226 -9.62432 -9.29102 -9.24894 -8.88331 -8.86475 -8.04410 -7.03268 -6.65224 -4.17043 0.44698 0.92449 1.05115 1.98750 2.16253 2.90656 3.02933 3.04081 3.09834 3.23523 3.63280 3.80148 3.84924 4.03647 4.30605 4.57734 4.64953 4.70804 4.78651 4.85913 4.92233 4.96814 4.99230 5.03396 5.14168 5.19210 5.30409 5.37302 5.38704 5.43549 5.50292 5.58370 5.61848 5.71565 5.79320 5.88834 5.98046 5.99677 6.03817 6.11428 6.14457 6.32043 6.39135 6.42351 6.44633 6.75639 6.89044 7.03678 7.14101 7.29750 7.39292 7.54977 7.74875 7.98970 8.78132 9.46267 10.50633 Molecular weight = 366.13amu Principal moments of inertia in cm(-1) A = 0.019277 B = 0.002264 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.168288 B =12363.885705 C =13333.245734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.300 6.300 3 C 0.051 3.949 4 C -0.148 4.148 5 C -0.171 4.171 6 C 0.052 3.948 7 C -0.247 4.247 8 C -0.126 4.126 9 C 0.069 3.931 10 O -0.329 6.329 11 C 0.139 3.861 12 C -0.141 4.141 13 C -0.088 4.088 14 C -0.136 4.136 15 C -0.062 4.062 16 C -0.174 4.174 17 C 0.446 3.554 18 O -0.466 6.466 19 C -0.057 4.057 20 C -0.222 4.222 21 C 0.147 3.853 22 O -0.147 6.147 23 C -0.391 4.391 24 H 0.098 0.902 25 C 0.042 3.958 26 N -0.844 5.844 27 Si 0.945 3.055 28 H -0.264 1.264 29 H -0.274 1.274 30 H -0.274 1.274 31 H 0.045 0.955 32 H 0.094 0.906 33 H 0.047 0.953 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.071 0.929 37 H 0.111 0.889 38 H 0.062 0.938 39 H 0.102 0.898 40 H 0.134 0.866 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.116 0.884 45 H 0.139 0.861 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.784 11.658 -6.080 20.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.214 6.214 3 C 0.006 3.994 4 C -0.167 4.167 5 C -0.172 4.172 6 C 0.033 3.967 7 C -0.248 4.248 8 C -0.163 4.163 9 C -0.004 4.004 10 O -0.246 6.246 11 C 0.094 3.906 12 C -0.159 4.159 13 C -0.106 4.106 14 C -0.154 4.154 15 C -0.080 4.080 16 C -0.175 4.175 17 C 0.329 3.671 18 O -0.345 6.345 19 C -0.076 4.076 20 C -0.241 4.241 21 C 0.091 3.909 22 O -0.048 6.048 23 C -0.467 4.467 24 H 0.115 0.885 25 C -0.165 4.165 26 N -0.476 5.476 27 Si 0.769 3.231 28 H -0.188 1.188 29 H -0.199 1.199 30 H -0.199 1.199 31 H 0.063 0.937 32 H 0.113 0.887 33 H 0.066 0.934 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.090 0.910 37 H 0.129 0.871 38 H 0.081 0.919 39 H 0.119 0.881 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.149 0.851 44 H 0.134 0.866 45 H 0.156 0.844 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.545 11.375 -5.597 20.059 hybrid contribution 0.701 0.213 -0.132 0.745 sum -14.844 11.588 -5.729 19.684 Atomic orbital electron populations 1.22979 0.80401 1.03355 1.00143 1.86257 1.19355 1.26139 1.89688 1.18033 0.89388 0.84524 1.07420 1.21147 0.98863 0.90816 1.05884 1.18149 0.92889 0.91231 1.14978 1.22435 0.89397 0.95313 0.89556 1.20891 1.01137 0.96974 1.05830 1.21267 0.99006 0.97591 0.98397 1.22809 0.87533 0.88961 1.01142 1.85734 1.60610 1.35959 1.42267 1.18712 0.93694 0.87528 0.90622 1.21209 0.98207 1.00455 0.96075 1.21192 0.99084 0.93218 0.97121 1.21154 0.94321 0.99285 1.00607 1.21076 0.96963 0.96012 0.93992 1.21011 0.98075 0.96928 1.01488 1.19134 0.82978 0.87238 0.77745 1.90654 1.68792 1.37070 1.38010 1.20815 0.91951 0.97584 0.97215 1.20831 1.00771 0.90659 1.11868 1.18882 0.88260 0.87675 0.96129 1.83978 1.19761 1.25788 1.75264 1.21562 0.78328 0.95109 1.51661 0.88460 1.25413 1.00903 0.94142 0.96061 1.70037 1.36607 0.97839 1.43131 0.85588 0.79907 0.79138 0.78503 1.18819 1.19895 1.19906 0.93680 0.88709 0.93428 0.85327 0.85306 0.90996 0.87055 0.91948 0.88072 0.84803 0.85205 0.85240 0.85073 0.86618 0.84396 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.80 101.05 0.99 1.36 16 2 O -0.30 -6.06 10.28 -34.19 -0.35 -6.41 16 3 C 0.05 1.04 6.70 -39.12 -0.26 0.78 16 4 C -0.15 -2.48 6.29 -38.97 -0.25 -2.73 16 5 C -0.17 -2.81 5.25 -105.04 -0.55 -3.36 16 6 C 0.05 0.77 9.31 -37.16 -0.35 0.42 16 7 C -0.25 -3.53 5.10 -103.94 -0.53 -4.06 16 8 C -0.13 -1.57 4.38 -28.20 -0.12 -1.69 16 9 C 0.07 0.77 6.49 36.80 0.24 1.01 16 10 O -0.33 -4.21 9.74 -18.31 -0.18 -4.39 16 11 C 0.14 1.68 5.51 -38.66 -0.21 1.47 16 12 C -0.14 -1.34 10.00 -39.51 -0.40 -1.74 16 13 C -0.09 -0.69 10.03 -39.49 -0.40 -1.09 16 14 C -0.14 -1.13 10.03 -39.58 -0.40 -1.53 16 15 C -0.06 -0.67 9.79 -39.28 -0.38 -1.05 16 16 C -0.17 -2.25 4.99 -104.77 -0.52 -2.77 16 17 C 0.45 6.69 6.36 -34.00 -0.22 6.47 16 18 O -0.47 -8.00 17.02 5.11 0.09 -7.91 16 19 C -0.06 -0.98 9.78 -39.11 -0.38 -1.36 16 20 C -0.22 -4.45 9.14 -39.50 -0.36 -4.81 16 21 C 0.15 3.39 6.67 -38.74 -0.26 3.13 16 22 O -0.15 -4.02 9.52 -13.81 -0.13 -4.15 16 23 C -0.39 -10.31 9.48 30.92 0.29 -10.02 16 24 H 0.10 2.33 5.18 -52.48 -0.27 2.06 16 25 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 26 N -0.84 -23.65 13.67 55.48 0.76 -22.89 16 27 Si 0.94 19.35 29.55 -169.99 -5.02 14.32 16 28 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 29 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 30 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 31 H 0.04 0.51 7.61 -51.93 -0.39 0.12 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.05 0.58 7.64 -51.93 -0.40 0.18 16 34 H 0.13 1.81 2.19 -52.49 -0.12 1.70 16 35 H 0.13 1.85 7.56 -52.49 -0.40 1.45 16 36 H 0.07 0.85 7.61 -51.93 -0.40 0.45 16 37 H 0.11 1.50 4.74 -51.93 -0.25 1.25 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.10 1.08 5.89 -51.93 -0.31 0.77 16 40 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 43 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 44 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 45 H 0.14 2.72 5.61 -52.48 -0.29 2.43 16 46 H 0.27 6.97 8.31 -40.82 -0.34 6.64 16 LS Contribution 380.61 15.07 5.74 5.74 Total: -1.00 -32.00 380.61 -8.17 -40.17 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -4.91 Total: 6.12 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -4.16 Total: -20.59 kcal Atomic # 7 Polarization: -23.65 SS G_CDS: 0.76 Total: -22.89 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.57 Total: -22.86 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.32 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.00 -8.17 -40.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102971167.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.817 kcal (2) G-P(sol) polarization free energy of solvation -31.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds