Wall clock time and date at job start Tue Mar 31 2020 06:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99937 * 2 1 4 4 H 1.48503 * 109.46903 * 240.00166 * 3 2 1 5 5 H 1.48493 * 109.47449 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46765 * 120.00583 * 3 2 1 7 7 C 1.37878 * 119.99630 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99748 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00256 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46850 * 179.97438 * 9 7 2 11 11 C 1.46498 * 120.00259 * 269.99890 * 10 9 7 12 12 C 1.50698 * 109.47318 * 270.00406 * 11 10 9 13 13 C 1.38226 * 119.61882 * 94.72756 * 12 11 10 14 14 C 1.38625 * 119.16046 * 179.75292 * 13 12 11 15 15 C 1.38674 * 118.42079 * 0.51087 * 14 13 12 16 16 C 1.38180 * 119.16310 * 359.73340 * 15 14 13 17 17 N 1.31859 * 119.61679 * 275.00280 * 12 11 10 18 18 C 1.34780 * 119.99312 * 90.00510 * 10 9 7 19 19 O 1.21704 * 119.99478 * 179.97438 * 18 10 9 20 20 C 1.46429 * 120.00339 * 359.97438 * 18 10 9 21 21 C 1.34806 * 119.99714 * 186.45902 * 20 18 10 22 22 C 1.47205 * 120.00276 * 9.82745 * 21 20 18 23 23 C 1.39850 * 120.17431 * 49.14787 * 22 21 20 24 24 C 1.37866 * 119.82914 * 179.97438 * 23 22 21 25 25 C 1.38417 * 120.17176 * 359.97438 * 24 23 22 26 26 C 1.38384 * 120.34790 * 359.72989 * 25 24 23 27 27 C 1.37911 * 120.16223 * 0.54692 * 26 25 24 28 28 N 1.48030 * 120.08417 * 179.72476 * 27 26 25 29 29 O 1.21793 * 119.99825 * 354.76133 * 28 27 26 30 30 O 1.21801 * 119.99883 * 174.47896 * 28 27 26 31 31 H 0.97001 * 119.99567 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.47351 * 60.00741 * 9 7 2 33 33 H 1.08995 * 109.47203 * 300.00350 * 9 7 2 34 34 H 1.08991 * 109.46887 * 30.00604 * 11 10 9 35 35 H 1.08998 * 109.46659 * 150.00344 * 11 10 9 36 36 H 1.07996 * 120.42045 * 359.97438 * 13 12 11 37 37 H 1.07998 * 120.78917 * 180.26255 * 14 13 12 38 38 H 1.08004 * 120.41963 * 179.70599 * 15 14 13 39 39 H 1.07998 * 119.61830 * 180.02562 * 16 15 14 40 40 H 1.07998 * 119.99767 * 6.46168 * 20 18 10 41 41 H 1.08007 * 120.00079 * 189.81613 * 21 20 18 42 42 H 1.08007 * 120.08812 * 359.97438 * 23 22 21 43 43 H 1.08001 * 119.91438 * 179.97438 * 24 23 22 44 44 H 1.08002 * 119.83105 * 180.02562 * 25 24 23 45 45 H 1.07992 * 119.91867 * 180.27955 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0018 11 6 2.6781 -4.1689 -1.2711 12 6 1.7611 -5.2829 -1.7059 13 6 0.7264 -5.0133 -2.5819 14 6 -0.1083 -6.0461 -2.9797 15 6 0.1234 -7.3152 -2.4709 16 6 1.1745 -7.5078 -1.5949 17 7 1.9517 -6.5024 -1.2421 18 6 2.6417 -4.1254 1.1650 19 8 3.4323 -5.0507 1.1640 20 6 2.1672 -3.5691 2.4336 21 6 2.7017 -3.9918 3.5968 22 6 3.9017 -4.8444 3.5886 23 6 5.0144 -4.4846 2.8217 24 6 6.1348 -5.2881 2.8197 25 6 6.1603 -6.4480 3.5745 26 6 5.0656 -6.8077 4.3409 27 6 3.9355 -6.0174 4.3488 28 7 2.7632 -6.4070 5.1644 29 8 2.7586 -7.4729 5.7537 30 8 1.8055 -5.6594 5.2504 31 1 -0.4849 0.8401 0.0004 32 1 0.6241 -2.5568 -0.8904 33 1 0.6247 -2.5571 0.8896 34 1 2.6854 -3.3870 -2.0303 35 1 3.6876 -4.5590 -1.1416 36 1 0.5724 -4.0114 -2.9546 37 1 -0.9222 -5.8660 -3.6664 38 1 -0.5100 -8.1425 -2.7554 39 1 1.3619 -8.4932 -1.1945 40 1 1.3890 -2.8203 2.4375 41 1 2.2497 -3.7048 4.5348 42 1 4.9962 -3.5796 2.2324 43 1 6.9947 -5.0117 2.2276 44 1 7.0410 -7.0731 3.5692 45 1 5.0948 -7.7119 4.9307 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103913304.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:46 Heat of formation + Delta-G solvation = 59.905610 kcal Electronic energy + Delta-G solvation = -33018.162557 eV Core-core repulsion = 28584.251061 eV Total energy + Delta-G solvation = -4433.911496 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.136 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.97363 -40.17261 -39.59850 -38.54241 -36.41160 -35.36115 -33.76092 -32.87496 -32.24051 -31.77047 -31.53167 -29.85330 -27.75269 -26.64500 -26.03029 -23.90445 -23.42347 -22.92389 -22.32720 -22.08753 -20.78299 -19.05448 -18.44762 -17.92910 -17.32383 -17.04252 -16.90860 -16.32576 -16.02219 -15.97612 -15.38291 -15.21758 -15.19566 -14.69384 -14.52328 -13.93812 -13.74962 -13.63090 -13.17850 -13.05871 -12.79972 -12.71391 -12.54766 -12.30358 -12.01653 -11.73328 -11.59559 -11.48741 -11.31936 -11.26366 -11.03624 -10.95571 -10.84840 -10.79949 -10.27100 -9.94175 -9.84673 -9.68865 -9.43812 -9.19169 -9.17285 -8.84062 -8.65771 -8.20815 -7.85089 -6.27804 -4.36459 0.03342 0.89780 1.24549 1.47215 1.60807 1.67112 1.89031 3.17389 3.23795 3.25060 3.53239 3.67996 3.84662 4.19599 4.27256 4.50026 4.54920 4.55965 4.81647 4.93124 4.97623 5.00703 5.05674 5.14407 5.20721 5.25168 5.30847 5.35330 5.65830 5.72626 5.75621 5.84066 5.93134 5.96500 6.07670 6.13018 6.22319 6.30015 6.33209 6.39865 6.46944 6.55833 6.66398 6.73818 6.86853 7.07561 7.37510 7.65699 7.89400 7.92952 8.15409 8.27545 8.67315 8.87373 9.32084 10.78691 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.006562 B = 0.004118 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4266.077567 B = 6797.376150 C = 9337.451418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.067 3.933 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.235 3.765 10 N -0.580 5.580 11 C 0.169 3.831 12 C 0.118 3.882 13 C -0.155 4.155 14 C -0.080 4.080 15 C -0.180 4.180 16 C 0.092 3.908 17 N -0.458 5.458 18 C 0.535 3.465 19 O -0.546 6.546 20 C -0.144 4.144 21 C -0.086 4.086 22 C 0.041 3.959 23 C -0.049 4.049 24 C -0.076 4.076 25 C -0.121 4.121 26 C -0.070 4.070 27 C -0.043 4.043 28 N 0.038 4.962 29 O -0.180 6.180 30 O -0.161 6.161 31 H 0.267 0.733 32 H 0.036 0.964 33 H 0.040 0.960 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.138 0.862 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.149 0.851 40 H 0.153 0.847 41 H 0.155 0.845 42 H 0.139 0.861 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.770 -10.303 0.043 12.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.116 3.884 10 N -0.309 5.309 11 C 0.044 3.956 12 C -0.021 4.021 13 C -0.176 4.176 14 C -0.106 4.106 15 C -0.200 4.200 16 C -0.066 4.066 17 N -0.167 5.167 18 C 0.325 3.675 19 O -0.428 6.428 20 C -0.164 4.164 21 C -0.106 4.106 22 C 0.040 3.960 23 C -0.068 4.068 24 C -0.094 4.094 25 C -0.139 4.139 26 C -0.089 4.089 27 C -0.127 4.127 28 N 0.554 4.446 29 O -0.391 6.391 30 O -0.377 6.377 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.156 0.844 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.166 0.834 40 H 0.170 0.830 41 H 0.172 0.828 42 H 0.157 0.843 43 H 0.154 0.846 44 H 0.156 0.844 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.231 -10.606 0.208 13.427 hybrid contribution -1.036 1.015 -0.594 1.567 sum 7.195 -9.591 -0.386 11.996 Atomic orbital electron populations 1.69911 1.06014 1.27593 1.49148 1.24933 0.94835 0.99277 0.94581 0.86568 0.79581 0.82575 0.78839 1.20123 1.21116 1.20035 1.21413 0.93546 0.90249 1.52702 0.92024 1.19540 0.87543 0.82463 0.98878 1.48122 1.45221 1.33935 1.03637 1.20129 0.96397 0.91967 0.87070 1.21865 0.94988 0.92800 0.92459 1.22117 0.95826 1.00533 0.99086 1.21549 0.98280 0.92723 0.98092 1.22097 0.99878 0.98038 1.00028 1.22747 0.91426 0.98017 0.94393 1.67634 1.27691 0.99668 1.21732 1.18421 0.81387 0.82826 0.84840 1.90797 1.35188 1.29470 1.87298 1.23531 1.02302 0.99158 0.91452 1.22448 0.93222 0.95535 0.99365 1.18851 0.95202 0.90753 0.91232 1.21223 0.90647 1.00430 0.94509 1.21352 0.98081 0.93622 0.96391 1.21086 0.98021 0.97583 0.97258 1.20753 0.90885 0.98806 0.98488 1.21137 0.88116 1.00259 1.03157 1.43579 1.01986 0.99797 0.99265 1.94483 1.87505 1.11305 1.45857 1.94501 1.26165 1.49204 1.67786 0.92324 0.94558 0.94178 0.88618 0.89112 0.84445 0.85075 0.85294 0.83385 0.82961 0.82798 0.84328 0.84628 0.84401 0.83746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.23 13.29 55.43 0.74 -22.50 16 2 C 0.07 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 19.44 29.54 -169.99 -5.02 14.41 16 4 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.29 -6.22 7.11 56.52 0.40 -5.81 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.54 -12.97 9.39 -34.44 -0.32 -13.29 16 8 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 9 C 0.24 5.21 4.91 -5.19 -0.03 5.18 16 10 N -0.58 -11.47 2.44 -178.08 -0.43 -11.91 16 11 C 0.17 2.98 5.71 -5.20 -0.03 2.96 16 12 C 0.12 2.02 6.36 -82.59 -0.53 1.50 16 13 C -0.16 -2.33 9.72 -39.44 -0.38 -2.71 16 14 C -0.08 -1.03 10.18 -39.28 -0.40 -1.43 16 15 C -0.18 -2.24 10.11 -39.44 -0.40 -2.64 16 16 C 0.09 1.34 11.18 -17.55 -0.20 1.14 16 17 N -0.46 -8.15 10.27 -9.47 -0.10 -8.25 16 18 C 0.54 10.58 6.86 -12.96 -0.09 10.49 16 19 O -0.55 -11.11 11.95 5.19 0.06 -11.05 16 20 C -0.14 -2.65 9.18 -37.50 -0.34 -3.00 16 21 C -0.09 -1.44 7.94 -37.16 -0.29 -1.73 16 22 C 0.04 0.67 4.34 -105.06 -0.46 0.21 16 23 C -0.05 -0.73 6.74 -39.11 -0.26 -0.99 16 24 C -0.08 -0.91 10.03 -39.65 -0.40 -1.30 16 25 C -0.12 -1.33 10.04 -39.46 -0.40 -1.73 16 26 C -0.07 -0.91 9.55 -39.65 -0.38 -1.29 16 27 C -0.04 -0.69 6.88 -79.47 -0.55 -1.23 16 28 N 0.04 0.66 4.45 34.20 0.15 0.81 16 29 O -0.18 -3.09 18.46 -29.46 -0.54 -3.64 16 30 O -0.16 -2.90 15.80 -29.46 -0.47 -3.37 16 31 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 32 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 33 H 0.04 0.94 6.02 -51.93 -0.31 0.63 16 34 H 0.10 1.58 7.97 -51.93 -0.41 1.16 16 35 H 0.09 1.63 7.42 -51.93 -0.39 1.24 16 36 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16 37 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 38 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 39 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.15 2.87 6.15 -52.49 -0.32 2.54 16 41 H 0.15 2.34 6.75 -52.48 -0.35 1.99 16 42 H 0.14 2.08 7.48 -52.48 -0.39 1.69 16 43 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 44 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 45 H 0.14 1.61 7.62 -52.49 -0.40 1.21 16 LS Contribution 394.04 15.07 5.94 5.94 Total: -1.00 -30.10 394.04 -10.30 -40.40 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -5.08 Total: 7.44 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -5.55 Total: -8.29 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 0.36 Total: -41.84 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.95 Total: -18.06 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.10 -10.30 -40.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103913304.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.304 kcal (2) G-P(sol) polarization free energy of solvation -30.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds