Wall clock time and date at job start Tue Mar 31 2020 05:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99714 * 2 1 4 4 H 1.48501 * 109.47009 * 270.00224 * 3 2 1 5 5 H 1.48500 * 109.47524 * 30.00098 * 3 2 1 6 6 H 1.48499 * 109.47340 * 150.00358 * 3 2 1 7 7 C 1.37872 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99321 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00395 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47489 * 180.02562 * 9 7 2 11 11 C 1.39675 * 120.00421 * 85.00009 * 10 9 7 12 12 C 1.38910 * 120.07497 * 240.10011 * 11 10 9 13 13 C 1.38101 * 119.92398 * 180.25641 * 12 11 10 14 14 C 1.38282 * 120.07453 * 359.43423 * 13 12 11 15 15 C 1.38292 * 120.15013 * 0.55884 * 14 13 12 16 16 C 1.38110 * 120.07276 * 359.72670 * 15 14 13 17 17 S 1.65604 * 119.99951 * 265.00195 * 10 9 7 18 18 O 1.42101 * 106.40220 * 29.13830 * 17 10 9 19 19 O 1.42102 * 106.40327 * 162.05660 * 17 10 9 20 20 C 1.76199 * 107.21830 * 275.59873 * 17 10 9 21 21 C 1.33861 * 122.44583 * 269.71143 * 20 17 10 22 22 S 1.70612 * 110.96230 * 179.88957 * 21 20 17 23 23 C 1.75825 * 91.56611 * 0.31338 * 22 21 20 24 24 C 1.46394 * 125.46498 * 179.79459 * 23 22 21 25 25 O 1.21629 * 120.00224 * 180.02562 * 24 23 22 26 26 O 1.34898 * 119.99833 * 0.02863 * 24 23 22 27 27 C 1.36749 * 109.07482 * 359.82319 * 23 22 21 28 28 H 0.96998 * 120.00300 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46891 * 60.00309 * 9 7 2 30 30 H 1.09002 * 109.47226 * 300.00032 * 9 7 2 31 31 H 1.07998 * 120.03647 * 359.96830 * 12 11 10 32 32 H 1.08003 * 119.96179 * 179.71600 * 13 12 11 33 33 H 1.08002 * 119.92952 * 180.27947 * 14 13 12 34 34 H 1.07998 * 119.96425 * 179.74197 * 15 14 13 35 35 H 1.07998 * 120.03731 * 179.97438 * 16 15 14 36 36 H 1.08005 * 124.51298 * 359.97438 * 21 20 17 37 37 H 0.96705 * 117.00051 * 180.02562 * 26 24 23 38 38 H 1.08003 * 123.35562 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.7372 -4.0750 1.2044 12 6 4.1097 -4.0422 1.4156 13 6 4.6348 -4.5051 2.6061 14 6 3.7950 -4.9900 3.5919 15 6 2.4280 -5.0239 3.3850 16 6 1.8967 -4.5680 2.1945 17 16 2.6463 -4.3232 -1.4293 18 8 2.5467 -3.3156 -2.4263 19 8 3.8444 -5.0404 -1.1661 20 6 1.4197 -5.5278 -1.8151 21 6 1.5090 -6.7997 -1.4075 22 16 0.1664 -7.7073 -1.9409 23 6 -0.5222 -6.3050 -2.7476 24 6 -1.7786 -6.2891 -3.4987 25 8 -2.1628 -5.2592 -4.0195 26 8 -2.5102 -7.4166 -3.6133 27 6 0.3044 -5.2316 -2.5613 28 1 -0.4850 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8903 30 1 0.6248 -2.5571 0.8897 31 1 4.7658 -3.6595 0.6479 32 1 5.7023 -4.4842 2.7692 33 1 4.2078 -5.3472 4.5238 34 1 1.7752 -5.4070 4.1553 35 1 0.8292 -4.5951 2.0334 36 1 2.3220 -7.1979 -0.8184 37 1 -3.3323 -7.3570 -4.1192 38 1 0.1008 -4.2490 -2.9604 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106364984.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:00 Heat of formation + Delta-G solvation = -90.804800 kcal Electronic energy + Delta-G solvation = -28477.271466 eV Core-core repulsion = 24311.062559 eV Total energy + Delta-G solvation = -4166.208908 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 367.043 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.26230 -39.06857 -37.98290 -36.80448 -36.18326 -35.48199 -35.36235 -32.58799 -30.62252 -30.49701 -29.36912 -26.71692 -25.94850 -23.43043 -23.08666 -22.26543 -21.45613 -19.91342 -19.34929 -18.47199 -17.73878 -17.34118 -16.95514 -16.31686 -16.27999 -15.91432 -15.85499 -15.42291 -14.65447 -14.54576 -14.22972 -13.99777 -13.57728 -13.49982 -13.29334 -13.13903 -13.06745 -12.63642 -12.42643 -11.99910 -11.80252 -11.71816 -11.61702 -11.58189 -11.41638 -11.19096 -11.02553 -10.97123 -10.80463 -10.70269 -10.52720 -10.11429 -9.97822 -9.42372 -9.07822 -8.90055 -8.58765 -8.47596 -7.86043 -6.10031 -4.14213 0.03205 0.57374 1.17183 1.52715 1.60901 1.73434 1.76259 2.64380 2.74712 3.32751 3.38541 3.40651 3.46735 4.10744 4.11102 4.42909 4.55568 4.74859 4.98612 5.15465 5.23759 5.25327 5.27713 5.38344 5.45822 5.63590 5.72682 5.78660 5.92145 5.93449 6.19764 6.25702 6.38533 6.68887 6.81931 6.88490 7.06415 7.17786 7.22285 7.63347 7.65393 7.86627 8.09998 8.86883 9.50977 10.98740 Molecular weight = 367.04amu Principal moments of inertia in cm(-1) A = 0.008362 B = 0.004454 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3347.853514 B = 6284.292056 C = 8298.866356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.065 3.935 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.063 0.937 9 C 0.254 3.746 10 N -0.935 5.935 11 C 0.170 3.830 12 C -0.106 4.106 13 C -0.111 4.111 14 C -0.133 4.133 15 C -0.115 4.115 16 C -0.121 4.121 17 S 2.694 3.306 18 O -0.926 6.926 19 O -0.961 6.961 20 C -0.701 4.701 21 C -0.114 4.114 22 S 0.285 5.715 23 C -0.281 4.281 24 C 0.560 3.440 25 O -0.496 6.496 26 O -0.515 6.515 27 C 0.041 3.959 28 H 0.265 0.735 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.124 0.876 36 H 0.190 0.810 37 H 0.418 0.582 38 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.087 -18.612 0.987 18.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.138 4.138 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.081 0.919 9 C 0.134 3.866 10 N -0.767 5.767 11 C 0.075 3.925 12 C -0.127 4.127 13 C -0.130 4.130 14 C -0.151 4.151 15 C -0.134 4.134 16 C -0.143 4.143 17 S 2.782 3.218 18 O -0.916 6.916 19 O -0.951 6.951 20 C -0.798 4.798 21 C -0.254 4.254 22 S 0.552 5.448 23 C -0.400 4.400 24 C 0.402 3.598 25 O -0.384 6.384 26 O -0.328 6.328 27 C 0.010 3.990 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.144 0.856 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.207 0.793 37 H 0.277 0.723 38 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 0.191 -19.561 0.629 19.572 hybrid contribution -0.382 2.226 -0.330 2.283 sum -0.191 -17.335 0.299 17.338 Atomic orbital electron populations 1.69911 1.05978 1.27293 1.50127 1.24896 0.94895 0.99263 0.94734 0.86489 0.79791 0.82785 0.78393 1.20303 1.21137 1.19716 1.21360 0.93694 0.90127 1.51466 0.91882 1.19337 0.86690 0.81532 0.98992 1.55463 1.59406 1.43790 1.18053 1.17342 0.91614 0.96192 0.87313 1.21384 0.94387 0.99200 0.97737 1.20942 0.99589 0.99146 0.93307 1.21056 0.93675 1.01440 0.98974 1.20931 0.95176 1.00517 0.96776 1.21268 0.99999 0.98953 0.94039 1.02287 0.73333 0.72907 0.73310 1.93639 1.85858 1.55266 1.56834 1.93540 1.41817 1.74676 1.85067 1.30285 1.20179 1.13799 1.15527 1.25564 1.03235 0.96925 0.99711 1.83014 1.10203 1.09539 1.42018 1.23532 1.01322 1.00073 1.15037 1.19177 0.82418 0.80927 0.77234 1.91007 1.69900 1.32563 1.44965 1.84560 1.38718 1.37923 1.71627 1.20507 0.88332 0.99797 0.90371 0.92555 0.93938 0.93965 0.85619 0.86076 0.86469 0.86227 0.85764 0.79315 0.72250 0.80837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.75 13.29 55.43 0.74 -25.01 16 2 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.53 -14.48 9.36 -34.45 -0.32 -14.80 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.25 6.17 5.01 -5.20 -0.03 6.14 16 10 N -0.93 -19.03 2.83 -59.81 -0.17 -19.20 16 11 C 0.17 3.14 5.24 -83.79 -0.44 2.70 16 12 C -0.11 -1.86 8.61 -39.38 -0.34 -2.20 16 13 C -0.11 -1.60 10.04 -39.62 -0.40 -1.99 16 14 C -0.13 -1.71 10.04 -39.55 -0.40 -2.11 16 15 C -0.12 -1.55 10.04 -39.61 -0.40 -1.95 16 16 C -0.12 -1.94 9.41 -39.38 -0.37 -2.31 16 17 S 2.69 51.61 5.60 -107.50 -0.60 51.01 16 18 O -0.93 -21.10 16.82 -57.17 -0.96 -22.06 16 19 O -0.96 -18.18 15.23 -57.17 -0.87 -19.05 16 20 C -0.70 -10.97 5.87 -41.42 -0.24 -11.21 16 21 C -0.11 -1.40 10.40 29.20 0.30 -1.09 16 22 S 0.28 2.92 22.92 -107.50 -2.46 0.46 16 23 C -0.28 -3.86 6.45 -36.84 -0.24 -4.10 16 24 C 0.56 7.47 8.30 34.01 0.28 7.75 16 25 O -0.50 -8.27 17.63 -19.36 -0.34 -8.61 16 26 O -0.52 -4.69 13.29 -41.03 -0.55 -5.24 16 27 C 0.04 0.66 9.53 -40.42 -0.39 0.27 16 28 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.04 1.07 7.77 -51.93 -0.40 0.67 16 30 H 0.04 1.04 7.56 -51.93 -0.39 0.65 16 31 H 0.13 2.26 7.52 -52.49 -0.39 1.86 16 32 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 33 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.12 1.89 7.94 -52.49 -0.42 1.47 16 36 H 0.19 1.90 7.97 -52.48 -0.42 1.48 16 37 H 0.42 1.82 9.11 45.56 0.42 2.23 16 38 H 0.17 2.99 7.98 -52.48 -0.42 2.57 16 LS Contribution 368.38 15.07 5.55 5.55 Total: -1.00 -35.02 368.38 -10.60 -45.62 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -2.84 Total: 3.01 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: -3.07 Total: -23.19 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 0.57 Total: -44.21 kcal Atomic # 8 Polarization: -52.24 SS G_CDS: -2.72 Total: -54.96 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 54.54 SS G_CDS: -3.07 Total: 51.47 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.02 -10.60 -45.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106364984.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.189 kcal (2) G-P(sol) polarization free energy of solvation -35.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds