Wall clock time and date at job start Tue Mar 31 2020 06:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38257 * 120.00204 * 2 1 4 4 C 1.38214 * 120.00051 * 180.02562 * 3 2 1 5 5 C 1.38259 * 119.99984 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99983 * 179.97438 * 5 4 3 7 7 C 1.38217 * 120.00062 * 359.95216 * 5 4 3 8 8 C 1.50696 * 120.00072 * 180.02562 * 7 5 4 9 9 H 1.09005 * 109.51186 * 325.10737 * 8 7 5 10 10 C 1.53711 * 109.44118 * 85.38836 * 8 7 5 11 11 N 1.47154 * 108.16101 * 172.37569 * 10 8 7 12 12 S 1.65591 * 120.98556 * 129.43432 * 11 10 8 13 13 O 1.42098 * 104.28267 * 153.64524 * 12 11 10 14 14 O 1.42105 * 104.27528 * 25.79118 * 12 11 10 15 15 C 1.81399 * 104.45009 * 269.71860 * 12 11 10 16 16 C 1.53006 * 109.47004 * 179.97438 * 15 12 11 17 17 C 1.50699 * 109.46866 * 179.97438 * 16 15 12 18 18 H 1.08003 * 119.99962 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00270 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99834 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00496 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47141 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47494 * 119.99680 * 21 19 17 24 24 H 1.48505 * 109.47047 * 239.99860 * 21 19 17 25 25 C 1.47159 * 118.03476 * 309.15628 * 11 10 8 26 26 H 1.08997 * 109.68243 * 170.54528 * 25 11 10 27 27 C 1.52993 * 109.68562 * 291.06646 * 25 11 10 28 28 C 1.53297 * 108.38196 * 50.78955 * 25 11 10 29 29 O 1.42958 * 109.51297 * 205.00297 * 8 7 5 30 30 C 1.38216 * 119.99850 * 180.21101 * 2 1 3 31 31 H 1.09002 * 109.46786 * 89.99876 * 1 2 3 32 32 H 1.08992 * 109.47535 * 210.00008 * 1 2 3 33 33 H 1.09007 * 109.47142 * 330.00205 * 1 2 3 34 34 H 1.07994 * 120.00027 * 359.97438 * 3 2 1 35 35 H 1.07996 * 120.00018 * 179.97438 * 4 3 2 36 36 H 1.08994 * 109.47025 * 269.97510 * 6 5 4 37 37 H 1.08998 * 109.47209 * 29.97568 * 6 5 4 38 38 H 1.08997 * 109.46923 * 149.97719 * 6 5 4 39 39 H 1.09001 * 109.83703 * 52.69776 * 10 8 7 40 40 H 1.08999 * 109.75335 * 292.00092 * 10 8 7 41 41 H 1.09000 * 109.47234 * 59.99842 * 15 12 11 42 42 H 1.09001 * 109.47232 * 299.99353 * 15 12 11 43 43 H 1.08993 * 109.46955 * 300.00150 * 16 15 12 44 44 H 1.09000 * 109.47050 * 59.99979 * 16 15 12 45 45 H 0.96992 * 120.00032 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.47403 * 59.99452 * 27 25 11 47 47 H 1.08995 * 109.47554 * 179.97438 * 27 25 11 48 48 H 1.08997 * 109.47334 * 300.00022 * 27 25 11 49 49 H 1.08995 * 109.51555 * 67.62057 * 28 25 11 50 50 H 1.08993 * 109.51310 * 187.72484 * 28 25 11 51 51 H 1.07998 * 119.99942 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0016 6 6 5.7787 -0.0001 -0.0028 7 6 3.5806 -1.1971 -0.0011 8 6 4.3340 -2.5022 -0.0017 9 1 5.2455 -2.3961 -0.5901 10 6 4.6918 -2.8870 1.4428 11 7 5.2594 -4.2446 1.4286 12 16 6.6982 -4.5750 2.1787 13 8 6.6147 -5.9555 2.5047 14 8 6.7984 -3.5870 3.1952 15 6 7.9511 -4.2984 0.8964 16 6 9.3411 -4.5739 1.4737 17 6 10.3819 -4.3447 0.4082 18 1 10.0820 -4.0340 -0.5817 19 6 11.7169 -4.5326 0.6968 20 7 12.0821 -4.9114 1.9022 21 14 13.0071 -4.2478 -0.6235 22 1 12.3419 -3.8294 -1.8836 23 1 13.9428 -3.1833 -0.1801 24 1 13.7624 -5.5050 -0.8569 25 6 4.5074 -5.3014 0.7334 26 1 5.1195 -6.2003 0.6606 27 6 3.2237 -5.6133 1.5051 28 6 4.1560 -4.8000 -0.6720 29 8 3.5148 -3.5263 -0.5707 30 6 2.1980 -1.1970 -0.0044 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3634 0.8901 0.5138 34 1 1.6584 2.1326 -0.0004 35 1 4.1204 2.1325 -0.0010 36 1 6.1412 -0.0001 -1.0307 37 1 6.1425 0.8898 0.5108 38 1 6.1424 -0.8901 0.5107 39 1 3.7955 -2.8703 2.0628 40 1 5.4264 -2.1863 1.8396 41 1 7.8986 -3.2649 0.5540 42 1 7.7664 -4.9690 0.0572 43 1 9.5255 -3.9030 2.3127 44 1 9.3939 -5.6073 1.8164 45 1 13.0213 -5.0432 2.1054 46 1 2.6100 -4.7147 1.5679 47 1 2.6694 -6.3959 0.9871 48 1 3.4768 -5.9513 2.5100 49 1 5.0671 -4.7030 -1.2624 50 1 3.4837 -5.5096 -1.1542 51 1 1.6580 -2.1323 -0.0083 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107143648.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:13 Heat of formation + Delta-G solvation = -105.232640 kcal Electronic energy + Delta-G solvation = -32598.300338 eV Core-core repulsion = 28396.212204 eV Total energy + Delta-G solvation = -4202.088133 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.165 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.45945 -39.02416 -36.75409 -35.57906 -35.15470 -34.49272 -33.94067 -32.81432 -31.21546 -30.80464 -29.46078 -27.85700 -26.27891 -25.64711 -25.09225 -24.15987 -22.32308 -21.74194 -20.69356 -19.99742 -18.54233 -17.79769 -16.89361 -16.65205 -16.29931 -16.00179 -15.68207 -15.43512 -15.23894 -15.02972 -14.71590 -14.58780 -14.28807 -14.16198 -13.78046 -13.48130 -13.42262 -13.33964 -12.97034 -12.72939 -12.65928 -12.57416 -12.38116 -12.14450 -11.97213 -11.81419 -11.80052 -11.67792 -11.64699 -11.49834 -11.25106 -11.22718 -11.13326 -11.04283 -11.00628 -10.54553 -10.48591 -10.44953 -10.25762 -9.75566 -9.31630 -9.00498 -8.73250 -8.54736 -8.49012 -6.16507 -4.22354 0.63899 1.12886 1.25670 2.86745 3.22283 3.29798 3.32845 3.42015 3.58600 4.22606 4.34110 4.36999 4.52143 4.56276 4.62633 4.68426 4.74678 4.87918 4.91388 5.00997 5.03989 5.08192 5.14432 5.18735 5.27117 5.33647 5.37169 5.41764 5.43171 5.51088 5.52583 5.54461 5.58887 5.64553 5.67068 5.74223 5.77041 5.84010 5.94620 6.05583 6.08918 6.20317 6.27090 6.41096 6.43538 6.47656 6.52792 6.85437 7.00611 7.24541 7.30186 7.76404 8.12590 8.81221 9.42762 10.94545 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.011192 B = 0.002942 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.129935 B = 9514.870367 C =10933.860959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.099 4.099 3 C -0.115 4.115 4 C -0.118 4.118 5 C -0.076 4.076 6 C -0.127 4.127 7 C -0.080 4.080 8 C 0.119 3.881 9 H 0.078 0.922 10 C 0.101 3.899 11 N -1.005 6.005 12 S 2.586 3.414 13 O -0.960 6.960 14 O -0.961 6.961 15 C -0.589 4.589 16 C 0.029 3.971 17 C -0.520 4.520 18 H 0.062 0.938 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.899 3.101 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.113 3.887 26 H 0.107 0.893 27 C -0.154 4.154 28 C 0.054 3.946 29 O -0.368 6.368 30 C -0.087 4.087 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.100 0.900 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.033 0.967 44 H 0.033 0.967 45 H 0.265 0.735 46 H 0.063 0.937 47 H 0.065 0.935 48 H 0.061 0.939 49 H 0.060 0.940 50 H 0.107 0.893 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.641 8.015 -6.093 24.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.099 4.099 3 C -0.133 4.133 4 C -0.136 4.136 5 C -0.076 4.076 6 C -0.184 4.184 7 C -0.081 4.081 8 C 0.059 3.941 9 H 0.096 0.904 10 C -0.025 4.025 11 N -0.841 5.841 12 S 2.685 3.315 13 O -0.950 6.950 14 O -0.951 6.951 15 C -0.723 4.723 16 C -0.010 4.010 17 C -0.559 4.559 18 H 0.080 0.920 19 C -0.145 4.145 20 N -0.528 5.528 21 Si 0.727 3.273 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C 0.007 3.993 26 H 0.125 0.875 27 C -0.213 4.213 28 C -0.025 4.025 29 O -0.286 6.286 30 C -0.105 4.105 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.118 0.882 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.051 0.949 44 H 0.051 0.949 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.080 0.920 49 H 0.078 0.922 50 H 0.125 0.875 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -22.613 7.716 -5.093 24.430 hybrid contribution 1.223 0.261 -1.208 1.739 sum -21.390 7.977 -6.301 23.683 Atomic orbital electron populations 1.20757 0.91279 1.02635 1.02168 1.19905 0.96050 0.93115 1.00832 1.21020 0.94159 0.97456 1.00680 1.20955 0.94096 0.97299 1.01222 1.19702 0.96150 0.92260 0.99488 1.20965 0.90891 1.03603 1.02909 1.19323 0.93873 0.92477 1.02382 1.21291 0.93282 0.85547 0.93943 0.90441 1.22067 1.00928 0.83017 0.96439 1.58282 1.38382 1.14932 1.72531 1.05905 0.74270 0.74349 0.76934 1.93539 1.85415 1.33329 1.82742 1.93543 1.85724 1.61475 1.54371 1.30518 1.15140 1.10267 1.16340 1.18965 0.86210 0.98403 0.97440 1.21017 0.90615 1.47245 0.97025 0.91997 1.25072 0.98802 0.94885 0.95729 1.69964 1.17109 1.46033 1.19675 0.86420 0.81341 0.78008 0.81560 1.19625 1.20755 1.20771 1.21636 0.94823 0.90455 0.92404 0.87487 1.21999 0.96635 1.01907 1.00761 1.23028 0.98791 0.85358 0.95282 1.87897 1.40113 1.18294 1.82306 1.20853 0.93273 0.97791 0.98559 0.91354 0.91570 0.91738 0.86238 0.85853 0.90632 0.90862 0.91159 0.90254 0.88156 0.86361 0.86257 0.94858 0.94870 0.92538 0.91795 0.91565 0.92003 0.92204 0.87538 0.85282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.01 36.00 0.36 -0.42 16 2 C -0.10 -0.94 5.88 -104.62 -0.62 -1.55 16 3 C -0.12 -1.05 9.70 -39.58 -0.38 -1.43 16 4 C -0.12 -1.13 9.70 -39.58 -0.38 -1.52 16 5 C -0.08 -0.81 5.88 -104.62 -0.62 -1.42 16 6 C -0.13 -1.26 9.22 36.01 0.33 -0.93 16 7 C -0.08 -0.90 5.07 -104.62 -0.53 -1.43 16 8 C 0.12 1.35 2.30 -27.52 -0.06 1.29 16 9 H 0.08 0.87 6.99 -51.93 -0.36 0.50 16 10 C 0.10 1.28 5.26 -3.32 -0.02 1.26 16 11 N -1.01 -13.86 2.96 -105.79 -0.31 -14.17 16 12 S 2.59 46.51 5.42 -107.50 -0.58 45.93 16 13 O -0.96 -19.63 16.81 -57.54 -0.97 -20.59 16 14 O -0.96 -19.82 16.80 -57.54 -0.97 -20.79 16 15 C -0.59 -11.02 6.12 37.16 0.23 -10.79 16 16 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 17 C -0.52 -14.11 9.11 -34.44 -0.31 -14.42 16 18 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 21 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C 0.11 1.32 3.09 -67.42 -0.21 1.11 16 26 H 0.11 1.25 7.23 -51.93 -0.38 0.87 16 27 C -0.15 -1.64 9.24 37.15 0.34 -1.29 16 28 C 0.05 0.53 6.36 37.31 0.24 0.76 16 29 O -0.37 -4.10 8.84 -35.23 -0.31 -4.41 16 30 C -0.09 -0.92 9.01 -39.58 -0.36 -1.28 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 33 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 34 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 35 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 38 H 0.07 0.74 5.43 -51.93 -0.28 0.46 16 39 H 0.08 0.97 7.65 -51.93 -0.40 0.58 16 40 H 0.10 1.29 5.94 -51.93 -0.31 0.98 16 41 H 0.12 1.96 8.14 -51.92 -0.42 1.54 16 42 H 0.12 1.98 8.14 -51.92 -0.42 1.56 16 43 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.06 0.67 7.21 -51.93 -0.37 0.30 16 47 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 49 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 50 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 51 H 0.13 1.32 7.35 -52.49 -0.39 0.94 16 LS Contribution 416.99 15.07 6.28 6.28 Total: -1.00 -34.27 416.99 -11.73 -45.99 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -8.36 Total: 1.28 kcal Atomic # 6 Polarization: -27.74 SS G_CDS: -2.22 Total: -29.96 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.42 Total: -39.64 kcal Atomic # 8 Polarization: -43.55 SS G_CDS: -2.25 Total: -45.79 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 46.51 SS G_CDS: -0.58 Total: 45.93 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -34.27 -11.73 -45.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107143648.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.238 kcal (2) G-P(sol) polarization free energy of solvation -34.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds