Wall clock time and date at job start Tue Mar 31 2020 06:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46898 * 110.99847 * 2 1 4 4 C 1.50699 * 109.47323 * 66.04343 * 3 2 1 5 5 C 1.38430 * 122.53959 * 89.99915 * 4 3 2 6 6 C 1.33389 * 114.92114 * 179.97438 * 5 4 3 7 7 S 1.75887 * 109.59362 * 0.02562 * 6 5 4 8 8 C 1.33389 * 122.53940 * 269.71395 * 4 3 2 9 9 C 1.46893 * 111.00143 * 236.04492 * 2 1 3 10 10 C 1.50702 * 109.47470 * 288.16611 * 9 2 1 11 11 C 1.35087 * 126.07649 * 105.96613 * 10 9 2 12 12 N 1.35038 * 107.97883 * 180.25204 * 11 10 9 13 13 C 1.46496 * 125.92658 * 179.74929 * 12 11 10 14 14 C 1.50707 * 109.47216 * 125.00160 * 13 12 11 15 15 H 1.07997 * 120.00004 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99758 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00458 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99625 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47226 * 90.00402 * 18 16 14 20 20 H 1.48502 * 109.47097 * 210.00285 * 18 16 14 21 21 H 1.48505 * 109.47351 * 330.00011 * 18 16 14 22 22 N 1.40072 * 108.13981 * 359.76554 * 12 11 10 23 23 C 1.31624 * 108.10575 * 0.02562 * 22 12 11 24 24 C 1.48416 * 126.03227 * 179.97438 * 23 22 12 25 25 C 1.39323 * 120.12379 * 316.76763 * 24 23 22 26 26 C 1.38021 * 119.88204 * 179.97438 * 25 24 23 27 27 C 1.38316 * 120.12227 * 359.97381 * 26 25 24 28 28 C 1.38320 * 120.23752 * 0.02720 * 27 26 25 29 29 C 1.38023 * 120.12382 * 359.97438 * 28 27 26 30 30 H 1.09007 * 109.47216 * 178.70237 * 1 2 3 31 31 H 1.08999 * 109.47652 * 298.70008 * 1 2 3 32 32 H 1.08999 * 109.47181 * 58.70208 * 1 2 3 33 33 H 1.08996 * 109.47356 * 186.04364 * 3 2 1 34 34 H 1.08999 * 109.47156 * 306.04695 * 3 2 1 35 35 H 1.07994 * 122.53609 * 359.95921 * 5 4 3 36 36 H 1.07992 * 125.20584 * 180.02562 * 6 5 4 37 37 H 1.07995 * 125.20508 * 0.02562 * 8 4 3 38 38 H 1.09007 * 109.47383 * 168.16765 * 9 2 1 39 39 H 1.08997 * 109.47189 * 48.16561 * 9 2 1 40 40 H 1.07999 * 126.00788 * 0.03857 * 11 10 9 41 41 H 1.09003 * 109.46770 * 244.99699 * 13 12 11 42 42 H 1.08995 * 109.47682 * 4.99306 * 13 12 11 43 43 H 0.97001 * 120.00486 * 180.02562 * 17 16 14 44 44 H 1.08003 * 120.06042 * 359.95765 * 25 24 23 45 45 H 1.08005 * 119.93950 * 180.02562 * 26 25 24 46 46 H 1.07996 * 119.88065 * 179.74794 * 27 26 25 47 47 H 1.07999 * 119.94100 * 179.97438 * 28 27 26 48 48 H 1.08000 * 120.06300 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 1.2984 5 6 2.4553 1.9989 2.4138 6 6 1.9901 2.6501 3.4809 7 16 0.4352 3.3770 3.0968 8 6 0.5093 2.7418 1.4583 9 6 1.9954 -0.7660 -1.1375 10 6 1.7620 -2.2364 -0.9042 11 6 0.8382 -3.0032 -1.5235 12 7 0.9432 -4.2580 -1.0355 13 6 0.1238 -5.4058 -1.4321 14 6 1.0197 -6.5322 -1.8790 15 1 2.0922 -6.4055 -1.8691 16 6 0.4702 -7.7243 -2.3006 17 7 -0.8358 -7.8785 -2.3131 18 14 1.5807 -9.1202 -2.8552 19 1 1.9207 -9.9753 -1.6897 20 1 0.8780 -9.9350 -3.8787 21 1 2.8264 -8.5600 -3.4383 22 7 1.9712 -4.2714 -0.0842 23 6 2.4695 -3.0558 -0.0034 24 6 3.5779 -2.6239 0.8842 25 6 3.6205 -3.0529 2.2090 26 6 4.6539 -2.6487 3.0298 27 6 5.6463 -1.8195 2.5392 28 6 5.6089 -1.3905 1.2247 29 6 4.5802 -1.7887 0.3951 30 1 -0.3634 -1.0275 -0.0233 31 1 -0.3634 0.4935 0.9014 32 1 -0.3633 0.5339 -0.8781 33 1 3.0796 1.3445 -0.1082 34 1 1.5610 1.9273 -0.8309 35 1 3.3988 1.4735 2.4195 36 1 2.4914 2.7203 4.4348 37 1 -0.2439 2.8895 0.6986 38 1 3.0647 -0.5793 -1.2376 39 1 1.4858 -0.4575 -2.0503 40 1 0.1366 -2.6704 -2.2741 41 1 -0.4766 -5.7340 -0.5835 42 1 -0.5336 -5.1171 -2.2521 43 1 -1.2224 -8.7173 -2.6093 44 1 2.8462 -3.7005 2.5931 45 1 4.6881 -2.9811 4.0569 46 1 6.4509 -1.5022 3.1860 47 1 6.3861 -0.7428 0.8468 48 1 4.5522 -1.4535 -0.6311 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120453917.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:11 Heat of formation + Delta-G solvation = 143.346464 kcal Electronic energy + Delta-G solvation = -30071.188599 eV Core-core repulsion = 26219.481335 eV Total energy + Delta-G solvation = -3851.707264 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 367.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.61468 -38.86666 -38.54095 -36.38548 -33.82055 -32.30406 -31.15085 -30.59687 -30.03739 -29.41675 -27.74145 -27.38124 -25.68500 -23.66209 -23.38825 -22.31042 -22.04442 -21.30206 -19.86960 -19.13931 -18.80637 -17.64104 -16.69973 -16.51907 -15.91512 -15.65062 -15.57785 -14.96111 -14.87395 -14.62039 -14.34115 -13.90444 -13.80622 -13.35561 -13.14500 -13.10660 -13.02116 -12.85059 -12.64160 -12.46066 -12.28361 -12.22603 -12.16089 -11.73076 -11.61542 -11.48839 -11.40737 -10.99446 -10.93971 -10.87887 -10.79612 -10.67853 -10.26896 -9.89657 -9.72901 -8.97073 -8.91233 -8.68186 -8.64731 -8.54202 -8.16355 -8.11946 -7.54009 -6.27277 -4.32384 0.89720 1.47046 1.55575 1.66861 1.87079 2.55926 2.75963 3.22788 3.28466 3.29025 3.33277 3.51874 4.15936 4.29260 4.34606 4.73173 4.88303 4.97819 5.08926 5.10893 5.15220 5.19558 5.24773 5.27096 5.33981 5.38309 5.47293 5.52391 5.62026 5.65359 5.67836 5.79269 5.80853 5.90629 5.94425 6.11670 6.17233 6.22072 6.28978 6.34530 6.40843 6.52626 6.63730 6.71932 6.78966 6.96535 7.04784 7.15807 7.19310 7.22105 7.36916 7.67283 7.83896 7.97103 8.56264 8.76920 9.33684 10.81613 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.011490 B = 0.002542 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.223203 B =11011.145968 C =12530.475151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.524 5.524 3 C 0.113 3.887 4 C -0.083 4.083 5 C -0.110 4.110 6 C -0.215 4.215 7 S 0.076 5.924 8 C -0.209 4.209 9 C 0.141 3.859 10 C -0.239 4.239 11 C 0.052 3.948 12 N -0.321 5.321 13 C 0.257 3.743 14 C -0.529 4.529 15 H 0.069 0.931 16 C 0.063 3.937 17 N -0.895 5.895 18 Si 0.908 3.092 19 H -0.277 1.277 20 H -0.284 1.284 21 H -0.272 1.272 22 N -0.266 5.266 23 C 0.092 3.908 24 C 0.028 3.972 25 C -0.095 4.095 26 C -0.121 4.121 27 C -0.128 4.128 28 C -0.123 4.123 29 C -0.099 4.099 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.019 0.981 33 H 0.083 0.917 34 H 0.038 0.962 35 H 0.141 0.859 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.076 0.924 39 H 0.035 0.965 40 H 0.161 0.839 41 H 0.045 0.955 42 H 0.054 0.946 43 H 0.267 0.733 44 H 0.121 0.879 45 H 0.117 0.883 46 H 0.115 0.885 47 H 0.117 0.883 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.343 22.929 7.685 25.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.248 5.248 3 C -0.017 4.017 4 C -0.096 4.096 5 C -0.140 4.140 6 C -0.350 4.350 7 S 0.339 5.661 8 C -0.345 4.345 9 C 0.013 3.987 10 C -0.252 4.252 11 C -0.098 4.098 12 N -0.101 5.101 13 C 0.140 3.860 14 C -0.567 4.567 15 H 0.087 0.913 16 C -0.140 4.140 17 N -0.534 5.534 18 Si 0.735 3.265 19 H -0.203 1.203 20 H -0.210 1.210 21 H -0.197 1.197 22 N -0.090 5.090 23 C -0.071 4.071 24 C 0.026 3.974 25 C -0.115 4.115 26 C -0.139 4.139 27 C -0.147 4.147 28 C -0.142 4.142 29 C -0.118 4.118 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.038 0.962 33 H 0.101 0.899 34 H 0.057 0.943 35 H 0.159 0.841 36 H 0.179 0.821 37 H 0.177 0.823 38 H 0.094 0.906 39 H 0.053 0.947 40 H 0.179 0.821 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.139 0.861 45 H 0.135 0.865 46 H 0.133 0.867 47 H 0.135 0.865 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.222 22.067 9.245 24.489 hybrid contribution 0.870 -0.596 -2.120 2.368 sum 6.092 21.471 7.125 23.428 Atomic orbital electron populations 1.22381 0.87574 1.02377 0.99853 1.61923 1.07852 1.11166 1.43873 1.20757 1.00396 0.88501 0.92094 1.18828 0.94523 0.99110 0.97186 1.20084 1.01692 1.00357 0.91899 1.25537 0.99508 1.06550 1.03417 1.84212 1.19972 1.54422 1.07497 1.25452 1.02600 1.06576 0.99908 1.20255 0.99387 0.88900 0.90164 1.19492 1.04094 0.95591 1.05975 1.22197 1.00714 0.86149 1.00738 1.49358 1.24990 1.08420 1.27327 1.19740 0.89208 0.80689 0.96406 1.21239 0.93816 0.97338 1.44294 0.91268 1.24936 0.95324 0.98563 0.95181 1.69913 1.09991 1.26464 1.46988 0.86330 0.80355 0.81349 0.78510 1.20257 1.20975 1.19675 1.77673 1.02550 1.18810 1.09937 1.20388 0.97392 0.91344 0.98009 1.17736 0.91866 0.95855 0.91913 1.21213 0.98301 0.98921 0.93026 1.20998 0.94812 0.98617 0.99500 1.21049 0.98858 0.98984 0.95772 1.20935 0.98383 1.00795 0.94037 1.21056 0.93673 0.97538 0.99551 0.91045 0.91711 0.96247 0.89894 0.94342 0.84084 0.82120 0.82327 0.90593 0.94664 0.82133 0.93673 0.92802 0.92301 0.86070 0.86458 0.86724 0.86465 0.86214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.01 60.06 0.54 0.86 16 2 N -0.52 -6.46 4.70 -245.83 -1.16 -7.62 16 3 C 0.11 1.14 5.22 -4.98 -0.03 1.11 16 4 C -0.08 -0.86 4.78 -106.25 -0.51 -1.37 16 5 C -0.11 -1.12 9.98 -41.21 -0.41 -1.53 16 6 C -0.21 -2.00 11.23 29.04 0.33 -1.67 16 7 S 0.08 0.69 23.34 -107.50 -2.51 -1.82 16 8 C -0.21 -2.00 9.41 29.04 0.27 -1.73 16 9 C 0.14 1.82 4.96 -4.98 -0.02 1.80 16 10 C -0.24 -4.03 4.79 -104.76 -0.50 -4.53 16 11 C 0.05 0.96 10.94 -17.26 -0.19 0.77 16 12 N -0.32 -7.21 3.67 -62.58 -0.23 -7.44 16 13 C 0.26 6.43 6.26 -5.19 -0.03 6.40 16 14 C -0.53 -14.62 9.23 -34.44 -0.32 -14.93 16 15 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.90 -25.24 13.29 55.43 0.74 -24.50 16 18 Si 0.91 21.41 29.54 -169.99 -5.02 16.39 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 N -0.27 -6.06 12.44 33.43 0.42 -5.65 16 23 C 0.09 1.76 6.66 -82.78 -0.55 1.21 16 24 C 0.03 0.46 5.73 -104.90 -0.60 -0.14 16 25 C -0.10 -1.50 9.78 -39.26 -0.38 -1.88 16 26 C -0.12 -1.55 10.03 -39.63 -0.40 -1.95 16 27 C -0.13 -1.46 10.04 -39.52 -0.40 -1.86 16 28 C -0.12 -1.42 10.03 -39.63 -0.40 -1.82 16 29 C -0.10 -1.35 8.89 -39.25 -0.35 -1.70 16 30 H 0.07 1.01 7.05 -51.92 -0.37 0.64 16 31 H 0.06 0.78 6.33 -51.93 -0.33 0.45 16 32 H 0.02 0.21 8.13 -51.93 -0.42 -0.22 16 33 H 0.08 0.78 7.85 -51.93 -0.41 0.37 16 34 H 0.04 0.36 8.09 -51.93 -0.42 -0.06 16 35 H 0.14 1.39 8.06 -52.49 -0.42 0.96 16 36 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.08 0.91 5.49 -51.93 -0.28 0.62 16 39 H 0.04 0.42 8.04 -51.93 -0.42 0.00 16 40 H 0.16 2.46 8.06 -52.49 -0.42 2.03 16 41 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.05 1.32 8.07 -51.93 -0.42 0.90 16 43 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.12 2.00 8.06 -52.48 -0.42 1.58 16 45 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 46 H 0.11 1.01 8.06 -52.49 -0.42 0.59 16 47 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 48 H 0.12 1.51 6.28 -52.49 -0.33 1.18 16 LS Contribution 414.80 15.07 6.25 6.25 Total: -1.00 -30.37 414.80 -12.30 -42.68 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -6.75 Total: 3.06 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -4.05 Total: -21.34 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: -0.23 Total: -45.21 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -2.51 Total: -1.82 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -30.37 -12.30 -42.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120453917.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.023 kcal (2) G-P(sol) polarization free energy of solvation -30.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds