Wall clock time and date at job start Tue Mar 31 2020 05:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35919 * 117.00516 * 2 1 4 4 C 1.38746 * 120.04101 * 5.73586 * 3 2 1 5 5 C 1.38123 * 119.95547 * 179.97438 * 4 3 2 6 6 C 1.38384 * 120.04593 * 0.02562 * 5 4 3 7 7 Cl 1.73598 * 119.95981 * 179.97438 * 6 5 4 8 8 C 1.38347 * 120.08073 * 0.02562 * 6 5 4 9 9 C 1.38164 * 120.04465 * 359.70053 * 8 6 5 10 10 S 1.76200 * 120.02222 * 180.29861 * 9 8 6 11 11 O 1.42095 * 106.40395 * 229.75337 * 10 9 8 12 12 O 1.42106 * 106.40107 * 2.67429 * 10 9 8 13 13 N 1.65605 * 107.21781 * 116.20948 * 10 9 8 14 14 C 1.38853 * 120.00050 * 297.70271 * 13 10 9 15 15 C 1.39569 * 119.83800 * 313.81240 * 14 13 10 16 16 C 1.36345 * 120.15470 * 179.72258 * 15 14 13 17 17 C 1.40884 * 119.83827 * 0.55484 * 16 15 14 18 18 C 1.41139 * 120.15680 * 179.70190 * 17 16 15 19 19 H 1.07990 * 120.00235 * 149.33049 * 18 17 16 20 20 C 1.39869 * 119.99627 * 329.33188 * 18 17 16 21 21 N 1.30902 * 119.99881 * 162.18645 * 20 18 17 22 22 Si 1.86796 * 120.00148 * 342.18957 * 20 18 17 23 23 H 1.48492 * 109.47564 * 86.59611 * 22 20 18 24 24 H 1.48505 * 109.47205 * 206.59779 * 22 20 18 25 25 H 1.48501 * 109.47259 * 326.59286 * 22 20 18 26 26 C 1.40884 * 119.68777 * 359.72146 * 17 16 15 27 27 C 1.36332 * 119.83770 * 359.97438 * 26 17 16 28 28 H 1.09011 * 109.46543 * 55.54532 * 1 2 3 29 29 H 1.08997 * 109.47385 * 175.54823 * 1 2 3 30 30 H 1.08997 * 109.47045 * 295.55677 * 1 2 3 31 31 H 1.08000 * 120.01977 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.97217 * 180.02562 * 5 4 3 33 33 H 1.08006 * 119.97422 * 179.97438 * 8 6 5 34 34 H 0.97001 * 119.99741 * 117.69417 * 13 10 9 35 35 H 1.07993 * 119.92227 * 359.97438 * 15 14 13 36 36 H 1.08001 * 120.08082 * 180.27835 * 16 15 14 37 37 H 0.96998 * 120.00328 * 180.02562 * 21 20 18 38 38 H 1.08004 * 120.07677 * 179.97438 * 26 17 16 39 39 H 1.08005 * 119.91955 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2110 0.0000 4 6 1.2968 2.3725 0.1200 5 6 1.9259 3.6022 0.1204 6 6 3.3025 3.6762 0.0005 7 17 4.0907 5.2229 0.0005 8 6 4.0513 2.5192 -0.1203 9 6 3.4262 1.2870 -0.1154 10 16 4.3812 -0.1865 -0.2614 11 8 3.7703 -0.9609 -1.2843 12 8 5.7423 0.2198 -0.3022 13 7 4.1891 -1.0367 1.1467 14 6 4.6113 -0.4897 2.3511 15 6 5.8690 0.1090 2.4389 16 6 6.2878 0.6532 3.6168 17 6 5.4524 0.5996 4.7499 18 6 5.8817 1.1551 5.9743 19 1 5.1593 1.5671 6.6632 20 6 7.2430 1.1721 6.2953 21 7 7.6847 1.9732 7.2317 22 14 8.4307 0.0518 5.3879 23 1 8.8952 0.7233 4.1476 24 1 9.5974 -0.2419 6.2584 25 1 7.7438 -1.2170 5.0362 26 6 4.1865 -0.0116 4.6553 27 6 3.7783 -0.5460 3.4694 28 1 -0.3633 0.5815 -0.8475 29 1 -0.3634 -1.0245 -0.0798 30 1 -0.3633 0.4433 0.9271 31 1 0.2224 2.3151 0.2140 32 1 1.3428 4.5065 0.2142 33 1 5.1256 2.5790 -0.2141 34 1 3.7815 -1.9168 1.1301 35 1 6.5103 0.1450 1.5707 36 1 7.2594 1.1202 3.6822 37 1 8.6287 1.9852 7.4541 38 1 3.5412 -0.0565 5.5202 39 1 2.8083 -1.0152 3.3955 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000144683229.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:05 Heat of formation + Delta-G solvation = -63.793926 kcal Electronic energy + Delta-G solvation = -28769.432734 eV Core-core repulsion = 24602.351399 eV Total energy + Delta-G solvation = -4167.081335 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 367.048 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.49331 -38.33940 -38.00173 -36.82936 -36.29607 -35.59946 -34.83712 -33.04308 -31.75700 -30.23081 -29.96501 -29.28580 -27.61266 -24.59790 -23.67900 -22.53799 -21.77374 -20.87470 -19.48635 -18.59783 -17.60011 -17.44821 -17.30094 -16.92940 -16.50828 -16.07181 -15.47603 -15.28125 -14.83480 -14.65406 -14.22105 -13.98391 -13.88270 -13.59077 -13.02065 -12.90118 -12.76088 -12.47776 -12.32953 -12.27423 -12.18717 -11.99083 -11.81482 -11.63894 -11.56238 -11.29879 -11.25043 -10.96774 -10.77579 -10.63651 -10.35780 -10.07035 -9.88424 -9.66419 -9.53322 -8.98379 -8.48445 -7.91864 -7.38075 -7.03792 -4.52612 0.48115 0.75174 0.97358 2.01689 2.45361 2.64477 2.83134 3.05406 3.12098 3.19917 3.29263 3.35534 3.92373 3.94107 4.33366 4.39146 4.46011 4.69752 4.82601 4.87113 5.01762 5.17592 5.21456 5.30193 5.36528 5.52385 5.73991 5.85147 5.90339 6.01295 6.15008 6.21084 6.56375 6.72872 6.77793 6.84103 7.01064 7.19448 7.36996 7.62464 7.74411 7.80654 8.04082 8.26407 8.57256 8.71193 9.97651 Molecular weight = 367.05amu Principal moments of inertia in cm(-1) A = 0.009853 B = 0.004019 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.953021 B = 6965.954945 C = 7957.088466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.305 6.305 3 C 0.231 3.769 4 C -0.217 4.217 5 C -0.020 4.020 6 C -0.091 4.091 7 Cl -0.062 7.062 8 C 0.031 3.969 9 C -0.686 4.686 10 S 2.688 3.312 11 O -0.963 6.963 12 O -0.955 6.955 13 N -1.024 6.024 14 C -0.015 4.015 15 C -0.092 4.092 16 C -0.230 4.230 17 C 0.092 3.908 18 C -0.437 4.437 19 H 0.092 0.908 20 C 0.083 3.917 21 N -0.801 5.801 22 Si 0.912 3.088 23 H -0.262 1.262 24 H -0.291 1.291 25 H -0.247 1.247 26 C -0.201 4.201 27 C -0.076 4.076 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.160 0.840 34 H 0.414 0.586 35 H 0.129 0.871 36 H 0.111 0.889 37 H 0.287 0.713 38 H 0.103 0.897 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.469 0.335 -12.752 17.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.216 6.216 3 C 0.183 3.817 4 C -0.237 4.237 5 C -0.039 4.039 6 C -0.119 4.119 7 Cl -0.033 7.033 8 C 0.011 3.989 9 C -0.771 4.771 10 S 2.778 3.222 11 O -0.953 6.953 12 O -0.945 6.945 13 N -0.777 5.777 14 C -0.111 4.111 15 C -0.113 4.113 16 C -0.250 4.250 17 C 0.088 3.912 18 C -0.466 4.466 19 H 0.110 0.890 20 C -0.137 4.137 21 N -0.425 5.425 22 Si 0.738 3.262 23 H -0.187 1.187 24 H -0.218 1.218 25 H -0.170 1.170 26 C -0.221 4.221 27 C -0.097 4.097 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.081 0.919 31 H 0.162 0.838 32 H 0.160 0.840 33 H 0.177 0.823 34 H 0.250 0.750 35 H 0.147 0.853 36 H 0.128 0.872 37 H 0.098 0.902 38 H 0.121 0.879 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.618 0.328 -13.354 17.703 hybrid contribution -0.381 0.163 0.275 0.497 sum -11.999 0.491 -13.079 17.756 Atomic orbital electron populations 1.23222 0.76991 1.04902 1.01828 1.86137 1.22704 1.25897 1.86886 1.18321 0.90416 0.85010 0.87983 1.21227 1.00718 0.91530 1.10207 1.21067 0.92477 0.98218 0.92108 1.20790 0.93115 0.87336 1.10666 1.98375 1.80512 1.27228 1.97227 1.20740 1.00988 0.88624 0.88523 1.30297 1.04326 1.19662 1.22800 1.02540 0.74067 0.72926 0.72629 1.93552 1.78073 1.68586 1.55085 1.93543 1.31772 1.83087 1.86076 1.52247 1.76264 1.27748 1.21436 1.16726 0.95472 1.13041 0.85839 1.21083 0.93438 0.97902 0.98870 1.20881 1.01948 1.09219 0.92987 1.17836 0.91854 0.88761 0.92767 1.19501 0.93083 1.31709 1.02267 0.89001 1.26211 0.99242 0.94055 0.94146 1.69718 1.17444 1.29112 1.26224 0.86366 0.78635 0.82381 0.78777 1.18738 1.21797 1.17009 1.20643 0.99146 1.05702 0.96645 1.20369 0.96782 0.99584 0.93000 0.92036 0.87384 0.91908 0.83812 0.84015 0.82293 0.75001 0.85302 0.87151 0.90220 0.87855 0.88422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.82 101.05 0.99 1.18 16 2 O -0.30 -3.85 9.33 -27.91 -0.26 -4.11 16 3 C 0.23 3.18 6.63 -39.22 -0.26 2.92 16 4 C -0.22 -2.41 9.03 -39.44 -0.36 -2.77 16 5 C -0.02 -0.22 9.82 -39.57 -0.39 -0.61 16 6 C -0.09 -1.24 6.32 -39.49 -0.25 -1.48 16 7 Cl -0.06 -0.79 28.95 -51.86 -1.50 -2.29 16 8 C 0.03 0.47 9.33 -39.57 -0.37 0.10 16 9 C -0.69 -10.78 5.79 -39.44 -0.23 -11.01 16 10 S 2.69 45.76 5.20 -107.50 -0.56 45.20 16 11 O -0.96 -17.34 17.35 -62.13 -1.08 -18.42 16 12 O -0.95 -18.16 14.02 -57.17 -0.80 -18.96 16 13 N -1.02 -17.05 5.72 32.51 0.19 -16.86 16 14 C -0.01 -0.29 6.15 -83.69 -0.51 -0.81 16 15 C -0.09 -2.01 9.14 -39.77 -0.36 -2.37 16 16 C -0.23 -5.47 7.26 -39.26 -0.28 -5.75 16 17 C 0.09 2.23 5.09 -106.79 -0.54 1.69 16 18 C -0.44 -11.36 9.55 -37.87 -0.36 -11.72 16 19 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 20 C 0.08 2.12 5.40 -17.34 -0.09 2.03 16 21 N -0.80 -20.72 13.93 55.54 0.77 -19.95 16 22 Si 0.91 20.47 24.71 -169.99 -4.20 16.26 16 23 H -0.26 -5.75 6.27 56.52 0.35 -5.40 16 24 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.25 -5.65 7.11 56.52 0.40 -5.25 16 26 C -0.20 -4.39 9.74 -39.27 -0.38 -4.77 16 27 C -0.08 -1.48 9.90 -39.77 -0.39 -1.87 16 28 H 0.06 0.37 7.66 -51.92 -0.40 -0.03 16 29 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.39 7.67 -51.93 -0.40 -0.01 16 31 H 0.14 1.09 6.33 -52.49 -0.33 0.76 16 32 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 33 H 0.16 2.37 7.34 -52.48 -0.39 1.99 16 34 H 0.41 5.77 8.95 -34.47 -0.31 5.46 16 35 H 0.13 2.76 5.65 -52.49 -0.30 2.46 16 36 H 0.11 2.64 4.56 -52.49 -0.24 2.40 16 37 H 0.29 6.74 8.30 -40.82 -0.34 6.40 16 38 H 0.10 2.11 8.06 -52.48 -0.42 1.69 16 39 H 0.10 1.62 8.06 -52.48 -0.42 1.19 16 LS Contribution 355.51 15.07 5.36 5.36 Total: -1.00 -30.66 355.51 -9.54 -40.19 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -3.65 Total: 8.81 kcal Atomic # 6 Polarization: -31.45 SS G_CDS: -3.80 Total: -35.24 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.96 Total: -36.81 kcal Atomic # 8 Polarization: -39.35 SS G_CDS: -2.14 Total: -41.49 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.20 Total: 16.26 kcal Atomic # 16 Polarization: 45.76 SS G_CDS: -0.56 Total: 45.20 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.50 Total: -2.29 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.66 -9.54 -40.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144683229.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.603 kcal (2) G-P(sol) polarization free energy of solvation -30.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds