Wall clock time and date at job start Tue Mar 31 2020 05:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35919 * 117.00516 * 2 1 4 4 C 1.38746 * 120.04101 * 5.73586 * 3 2 1 5 5 C 1.38123 * 119.95547 * 179.97438 * 4 3 2 6 6 C 1.38384 * 120.04593 * 0.02562 * 5 4 3 7 7 Cl 1.73598 * 119.95981 * 179.97438 * 6 5 4 8 8 C 1.38347 * 120.08073 * 0.02562 * 6 5 4 9 9 C 1.38164 * 120.04465 * 359.70053 * 8 6 5 10 10 S 1.76200 * 120.02222 * 180.29861 * 9 8 6 11 11 O 1.42095 * 106.40395 * 229.75337 * 10 9 8 12 12 O 1.42106 * 106.40107 * 2.67429 * 10 9 8 13 13 N 1.65605 * 107.21781 * 116.20948 * 10 9 8 14 14 C 1.38853 * 120.00050 * 297.70271 * 13 10 9 15 15 C 1.39569 * 119.83800 * 313.81240 * 14 13 10 16 16 C 1.36345 * 120.15470 * 179.72258 * 15 14 13 17 17 C 1.40884 * 119.83827 * 0.55484 * 16 15 14 18 18 C 1.41139 * 120.15680 * 179.70190 * 17 16 15 19 19 H 1.07990 * 120.00235 * 149.33049 * 18 17 16 20 20 C 1.39869 * 119.99627 * 329.33188 * 18 17 16 21 21 N 1.30902 * 119.99881 * 162.18645 * 20 18 17 22 22 Si 1.86796 * 120.00148 * 342.18957 * 20 18 17 23 23 H 1.48492 * 109.47564 * 86.59611 * 22 20 18 24 24 H 1.48505 * 109.47205 * 206.59779 * 22 20 18 25 25 H 1.48501 * 109.47259 * 326.59286 * 22 20 18 26 26 C 1.40884 * 119.68777 * 359.72146 * 17 16 15 27 27 C 1.36332 * 119.83770 * 359.97438 * 26 17 16 28 28 H 1.09011 * 109.46543 * 55.54532 * 1 2 3 29 29 H 1.08997 * 109.47385 * 175.54823 * 1 2 3 30 30 H 1.08997 * 109.47045 * 295.55677 * 1 2 3 31 31 H 1.08000 * 120.01977 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.97217 * 180.02562 * 5 4 3 33 33 H 1.08006 * 119.97422 * 179.97438 * 8 6 5 34 34 H 0.97001 * 119.99741 * 117.69417 * 13 10 9 35 35 H 1.07993 * 119.92227 * 359.97438 * 15 14 13 36 36 H 1.08001 * 120.08082 * 180.27835 * 16 15 14 37 37 H 0.96998 * 120.00328 * 180.02562 * 21 20 18 38 38 H 1.08004 * 120.07677 * 179.97438 * 26 17 16 39 39 H 1.08005 * 119.91955 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2110 0.0000 4 6 1.2968 2.3725 0.1200 5 6 1.9259 3.6022 0.1204 6 6 3.3025 3.6762 0.0005 7 17 4.0907 5.2229 0.0005 8 6 4.0513 2.5192 -0.1203 9 6 3.4262 1.2870 -0.1154 10 16 4.3812 -0.1865 -0.2614 11 8 3.7703 -0.9609 -1.2843 12 8 5.7423 0.2198 -0.3022 13 7 4.1891 -1.0367 1.1467 14 6 4.6113 -0.4897 2.3511 15 6 5.8690 0.1090 2.4389 16 6 6.2878 0.6532 3.6168 17 6 5.4524 0.5996 4.7499 18 6 5.8817 1.1551 5.9743 19 1 5.1593 1.5671 6.6632 20 6 7.2430 1.1721 6.2953 21 7 7.6847 1.9732 7.2317 22 14 8.4307 0.0518 5.3879 23 1 8.8952 0.7233 4.1476 24 1 9.5974 -0.2419 6.2584 25 1 7.7438 -1.2170 5.0362 26 6 4.1865 -0.0116 4.6553 27 6 3.7783 -0.5460 3.4694 28 1 -0.3633 0.5815 -0.8475 29 1 -0.3634 -1.0245 -0.0798 30 1 -0.3633 0.4433 0.9271 31 1 0.2224 2.3151 0.2140 32 1 1.3428 4.5065 0.2142 33 1 5.1256 2.5790 -0.2141 34 1 3.7815 -1.9168 1.1301 35 1 6.5103 0.1450 1.5707 36 1 7.2594 1.1202 3.6822 37 1 8.6287 1.9852 7.4541 38 1 3.5412 -0.0565 5.5202 39 1 2.8083 -1.0152 3.3955 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000144683229.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:05 Heat of formation + Delta-G solvation = -83.939717 kcal Electronic energy + Delta-G solvation = -28770.306321 eV Core-core repulsion = 24602.351399 eV Total energy + Delta-G solvation = -4167.954922 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 367.048 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.40818 -40.05266 -38.96672 -38.23073 -37.28166 -37.02693 -36.51344 -34.81290 -32.73707 -31.70746 -31.18321 -31.02050 -28.27178 -26.37983 -24.70289 -23.54171 -23.44909 -22.60510 -20.72878 -19.73327 -19.42481 -18.82241 -18.62234 -18.11618 -17.67100 -17.09731 -16.87059 -16.50070 -16.12577 -15.71240 -15.63829 -15.60972 -15.10824 -14.74295 -14.57618 -14.47018 -14.15062 -13.95623 -13.80731 -13.32694 -13.23410 -13.21411 -13.17601 -12.98717 -12.96163 -12.81470 -12.57217 -12.28663 -12.13512 -11.83419 -11.82469 -11.77656 -11.47398 -11.33429 -10.74447 -10.65617 -9.65619 -9.45437 -9.12658 -8.91121 -6.44535 -0.74699 -0.38756 -0.01611 0.69959 0.87673 1.02389 1.30499 1.39854 1.48964 1.84672 2.03898 2.12278 2.19856 2.55132 2.62487 3.29584 3.47081 3.57549 3.70073 3.95482 4.19882 4.24449 4.29656 4.39476 4.41559 4.42177 4.46715 4.56493 4.73811 4.80696 4.86984 4.91869 4.96417 5.05093 5.26831 5.29024 5.56540 5.60972 5.87941 5.94160 6.01624 6.15348 6.28789 6.41638 6.73457 6.84867 8.16488 Molecular weight = 367.05amu Principal moments of inertia in cm(-1) A = 0.009853 B = 0.004019 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.953021 B = 6965.954945 C = 7957.088466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.323 6.323 3 C 0.226 3.774 4 C -0.207 4.207 5 C -0.011 4.011 6 C -0.104 4.104 7 Cl -0.062 7.062 8 C 0.008 3.992 9 C -0.708 4.708 10 S 2.705 3.295 11 O -0.972 6.972 12 O -0.982 6.982 13 N -1.022 6.022 14 C 0.018 3.982 15 C -0.108 4.108 16 C -0.241 4.241 17 C 0.074 3.926 18 C -0.474 4.474 19 H 0.065 0.935 20 C 0.053 3.947 21 N -0.843 5.843 22 Si 0.954 3.046 23 H -0.260 1.260 24 H -0.276 1.276 25 H -0.254 1.254 26 C -0.201 4.201 27 C -0.070 4.070 28 H 0.079 0.921 29 H 0.125 0.875 30 H 0.080 0.920 31 H 0.186 0.814 32 H 0.177 0.823 33 H 0.148 0.852 34 H 0.429 0.571 35 H 0.132 0.868 36 H 0.101 0.899 37 H 0.294 0.706 38 H 0.115 0.885 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.619 -0.453 -14.592 21.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.235 6.235 3 C 0.176 3.824 4 C -0.226 4.226 5 C -0.030 4.030 6 C -0.131 4.131 7 Cl -0.033 7.033 8 C -0.012 4.012 9 C -0.797 4.797 10 S 2.797 3.203 11 O -0.962 6.962 12 O -0.972 6.972 13 N -0.776 5.776 14 C -0.078 4.078 15 C -0.130 4.130 16 C -0.261 4.261 17 C 0.070 3.930 18 C -0.504 4.504 19 H 0.083 0.917 20 C -0.162 4.162 21 N -0.469 5.469 22 Si 0.778 3.222 23 H -0.185 1.185 24 H -0.202 1.202 25 H -0.178 1.178 26 C -0.222 4.222 27 C -0.091 4.091 28 H 0.098 0.902 29 H 0.144 0.856 30 H 0.099 0.901 31 H 0.203 0.797 32 H 0.194 0.806 33 H 0.166 0.834 34 H 0.268 0.732 35 H 0.149 0.851 36 H 0.119 0.881 37 H 0.104 0.896 38 H 0.133 0.867 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.760 -0.511 -15.183 21.181 hybrid contribution 0.273 0.356 0.540 0.702 sum -14.486 -0.154 -14.643 20.598 Atomic orbital electron populations 1.23666 0.74358 1.06824 1.03611 1.86119 1.25434 1.25464 1.86474 1.18510 0.89910 0.86478 0.87480 1.21695 1.02600 0.90221 1.08076 1.21535 0.91603 0.99877 0.89945 1.20955 0.94192 0.86863 1.11139 1.98374 1.80779 1.26907 1.97249 1.20740 1.00880 0.89510 0.90082 1.29903 1.05440 1.18412 1.25956 1.01572 0.73444 0.73111 0.72144 1.93540 1.78178 1.69417 1.55044 1.93509 1.33859 1.83556 1.86281 1.52160 1.76271 1.29044 1.20139 1.16796 0.94253 1.09851 0.86870 1.21226 0.94667 0.98734 0.98341 1.20900 1.01851 1.09769 0.93562 1.17962 0.93246 0.89534 0.92228 1.19450 0.93194 1.34618 1.03106 0.91718 1.26712 1.00102 0.94736 0.94658 1.69739 1.18164 1.30884 1.28150 0.85718 0.77629 0.80589 0.78224 1.18538 1.20193 1.17785 1.20889 0.98242 1.04934 0.98090 1.20694 0.98225 0.98608 0.91610 0.90194 0.85647 0.90103 0.79661 0.80603 0.83448 0.73203 0.85064 0.88080 0.89553 0.86667 0.84259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.82 113.37 1.11 1.20 16 2 O -0.32 -6.92 9.33 -84.58 -0.79 -7.71 16 3 C 0.23 5.46 6.63 22.50 0.15 5.61 16 4 C -0.21 -3.66 9.03 22.36 0.20 -3.46 16 5 C -0.01 -0.21 9.82 22.28 0.22 0.01 16 6 C -0.10 -2.63 6.32 22.33 0.14 -2.48 16 7 Cl -0.06 -1.51 28.95 -2.72 -0.08 -1.59 16 8 C 0.01 0.23 9.33 22.28 0.21 0.44 16 9 C -0.71 -21.10 5.79 22.36 0.13 -20.97 16 10 S 2.70 88.51 5.20 -56.49 -0.29 88.21 16 11 O -0.97 -33.35 17.35 -123.26 -2.14 -35.49 16 12 O -0.98 -37.24 14.02 -128.00 -1.79 -39.03 16 13 N -1.02 -31.54 5.72 -51.07 -0.29 -31.83 16 14 C 0.02 0.68 6.15 38.67 0.24 0.92 16 15 C -0.11 -4.69 9.14 22.15 0.20 -4.49 16 16 C -0.24 -11.56 7.26 22.48 0.16 -11.39 16 17 C 0.07 3.63 5.09 -21.27 -0.11 3.52 16 18 C -0.47 -25.74 9.55 23.38 0.22 -25.52 16 19 H 0.06 3.72 8.06 -2.92 -0.02 3.70 16 20 C 0.05 2.82 5.40 85.23 0.46 3.28 16 21 N -0.84 -45.55 13.93 21.82 0.30 -45.25 16 22 Si 0.95 43.05 24.71 68.60 1.70 44.74 16 23 H -0.26 -11.47 6.27 99.48 0.62 -10.85 16 24 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 25 H -0.25 -11.60 7.11 99.48 0.71 -10.89 16 26 C -0.20 -8.54 9.74 22.47 0.22 -8.32 16 27 C -0.07 -2.52 9.90 22.15 0.22 -2.30 16 28 H 0.08 0.55 7.66 -2.38 -0.02 0.53 16 29 H 0.13 0.86 8.14 -2.39 -0.02 0.85 16 30 H 0.08 0.57 7.67 -2.39 -0.02 0.55 16 31 H 0.19 1.65 6.33 -2.91 -0.02 1.63 16 32 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 33 H 0.15 4.55 7.34 -2.91 -0.02 4.53 16 34 H 0.43 10.60 8.95 -96.74 -0.87 9.73 16 35 H 0.13 5.62 5.65 -2.91 -0.02 5.60 16 36 H 0.10 4.96 4.56 -2.91 -0.01 4.95 16 37 H 0.29 14.35 8.30 -92.71 -0.77 13.58 16 38 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 39 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -68.96 355.51 0.57 -68.39 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 0.18 Total: 23.50 kcal Atomic # 6 Polarization: -67.73 SS G_CDS: 3.78 Total: -63.96 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: 0.01 Total: -77.08 kcal Atomic # 8 Polarization: -77.50 SS G_CDS: -4.72 Total: -82.22 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 1.70 Total: 44.74 kcal Atomic # 16 Polarization: 88.51 SS G_CDS: -0.29 Total: 88.21 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.08 Total: -1.59 kcal Total: -68.96 0.57 -68.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144683229.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.554 kcal (2) G-P(sol) polarization free energy of solvation -68.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds