Wall clock time and date at job start Tue Mar 31 2020 05:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08994 * 109.47637 * 2 1 4 4 C 1.50700 * 109.47338 * 120.00026 * 2 1 3 5 5 H 1.08007 * 120.00139 * 119.99232 * 4 2 1 6 6 C 1.37869 * 120.00155 * 300.00095 * 4 2 1 7 7 N 1.31519 * 119.99819 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00453 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46840 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47463 * 119.99808 * 8 6 4 11 11 H 1.48505 * 109.47137 * 240.00087 * 8 6 4 12 12 N 1.46503 * 109.47039 * 239.99897 * 2 1 3 13 13 C 1.46498 * 119.99974 * 300.00179 * 12 2 1 14 14 C 1.34778 * 119.99951 * 120.00310 * 12 2 1 15 15 O 1.21587 * 119.99796 * 359.97438 * 14 12 2 16 16 N 1.34777 * 120.00129 * 180.02562 * 14 12 2 17 17 C 1.46502 * 119.99974 * 179.97438 * 16 14 12 18 18 H 1.08994 * 109.46968 * 34.99811 * 17 16 14 19 19 C 1.50698 * 109.46972 * 154.99918 * 17 16 14 20 20 C 1.38415 * 120.02708 * 224.99912 * 19 17 16 21 21 F 1.35099 * 120.00946 * 359.97438 * 20 19 17 22 22 C 1.38474 * 119.97981 * 179.97438 * 20 19 17 23 23 C 1.38210 * 120.02023 * 0.28104 * 22 20 19 24 24 C 1.38201 * 120.05118 * 359.44081 * 23 22 20 25 25 C 1.38420 * 120.02535 * 44.97419 * 19 17 16 26 26 F 1.35097 * 120.01373 * 0.02562 * 25 19 17 27 27 C 1.52999 * 109.47016 * 274.99419 * 17 16 14 28 28 F 1.39899 * 109.47411 * 300.00475 * 27 17 16 29 29 F 1.39904 * 109.47042 * 60.00494 * 27 17 16 30 30 F 1.39896 * 109.47239 * 179.97438 * 27 17 16 31 31 H 1.09004 * 109.47087 * 59.99702 * 1 2 3 32 32 H 1.09001 * 109.47450 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46901 * 299.99984 * 1 2 3 34 34 H 0.97001 * 119.99903 * 180.02562 * 7 6 4 35 35 H 1.09003 * 109.47356 * 269.99528 * 13 12 2 36 36 H 1.08998 * 109.47464 * 29.99914 * 13 12 2 37 37 H 1.09009 * 109.47064 * 150.00162 * 13 12 2 38 38 H 0.96997 * 119.99837 * 359.97438 * 16 14 12 39 39 H 1.08002 * 119.98641 * 179.97438 * 22 20 19 40 40 H 1.08000 * 119.96986 * 179.70463 * 23 22 20 41 41 H 1.08002 * 119.98829 * 180.25980 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.1455 -2.2877 3.6037 10 1 3.1466 -0.1875 4.8164 11 1 1.1660 -1.5867 4.8160 12 7 2.0182 -0.6906 -1.1962 13 6 1.6643 -2.0932 -1.4280 14 6 2.7931 -0.0357 -2.0833 15 8 3.0865 1.1285 -1.8911 16 7 3.2420 -0.6709 -3.1841 17 6 4.0838 0.0413 -4.1487 18 1 4.7295 0.7420 -3.6195 19 6 4.9308 -0.9501 -4.9042 20 6 6.2765 -0.6980 -5.1077 21 9 6.8313 0.4372 -4.6295 22 6 7.0540 -1.6099 -5.8017 23 6 6.4855 -2.7686 -6.2960 24 6 5.1432 -3.0240 -6.0884 25 6 4.3638 -2.1136 -5.3947 26 9 3.0505 -2.3609 -5.1968 27 6 3.1966 0.8076 -5.1317 28 9 2.3678 -0.0918 -5.8108 29 9 2.4103 1.7280 -4.4303 30 9 4.0005 1.4882 -6.0525 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 0.7095 1.1618 3.4844 35 1 2.4156 -2.7378 -0.9717 36 1 0.6903 -2.3002 -0.9847 37 1 1.6237 -2.2852 -2.5003 38 1 3.0076 -1.5995 -3.3376 39 1 8.1040 -1.4132 -5.9609 40 1 7.0916 -3.4769 -6.8412 41 1 4.7009 -3.9318 -6.4715 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155658115.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:21 Heat of formation + Delta-G solvation = -244.704248 kcal Electronic energy + Delta-G solvation = -35413.186605 eV Core-core repulsion = 29935.405875 eV Total energy + Delta-G solvation = -5477.780730 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.111 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -51.30627 -50.26753 -50.19494 -48.77848 -48.72914 -41.39232 -40.00296 -37.59473 -36.52462 -34.88285 -32.91965 -31.40178 -31.04971 -29.24435 -27.72815 -27.27893 -25.35109 -24.16935 -23.51726 -22.67666 -21.12695 -19.87779 -19.73224 -19.39607 -19.23217 -18.88870 -18.42396 -18.28745 -17.32427 -17.09512 -16.88289 -16.74150 -16.50951 -16.41577 -16.24198 -15.70156 -15.63390 -15.57116 -15.35997 -15.17906 -15.04772 -14.88999 -14.86085 -14.50302 -14.43952 -14.21364 -13.84694 -13.69494 -13.49671 -13.15641 -13.01293 -12.96613 -12.90359 -12.72178 -12.63937 -12.47325 -12.19067 -12.10970 -11.30601 -11.14967 -10.70406 -10.52960 -10.23645 -9.85488 -9.37005 -8.13751 -6.30245 -0.35264 -0.12134 1.26617 1.41828 1.43368 1.53594 1.58172 2.08146 2.25365 2.41884 2.48343 2.60054 2.73431 2.84521 3.09253 3.14622 3.25177 3.30386 3.51694 3.77262 3.98323 4.15696 4.24951 4.56157 4.58468 4.63433 4.69573 4.87594 4.89247 4.93427 4.98179 4.99781 5.04014 5.14014 5.33215 5.49102 5.64845 5.65864 5.89833 6.10621 6.17241 6.76649 6.95221 7.34726 7.52410 8.91131 Molecular weight = 366.11amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.003265 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.365874 B = 8574.868415 C = 9084.884357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.278 3.722 3 H 0.012 0.988 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.968 3.032 9 H -0.265 1.265 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.610 5.610 13 C 0.084 3.916 14 C 0.694 3.306 15 O -0.625 6.625 16 N -0.726 5.726 17 C 0.177 3.823 18 H 0.123 0.877 19 C -0.211 4.211 20 C 0.139 3.861 21 F -0.136 7.136 22 C -0.152 4.152 23 C -0.026 4.026 24 C -0.149 4.149 25 C 0.132 3.868 26 F -0.128 7.128 27 C 0.436 3.564 28 F -0.173 7.173 29 F -0.183 7.183 30 F -0.175 7.175 31 H 0.016 0.984 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.265 0.735 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.415 0.585 39 H 0.178 0.822 40 H 0.197 0.803 41 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.393 -13.207 -22.485 28.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.176 3.824 3 H 0.030 0.970 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.793 3.207 9 H -0.189 1.189 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.344 5.344 13 C -0.059 4.059 14 C 0.396 3.604 15 O -0.505 6.505 16 N -0.388 5.388 17 C 0.067 3.933 18 H 0.141 0.859 19 C -0.213 4.213 20 C 0.119 3.881 21 F -0.115 7.115 22 C -0.170 4.170 23 C -0.044 4.044 24 C -0.168 4.168 25 C 0.112 3.888 26 F -0.107 7.107 27 C 0.380 3.620 28 F -0.154 7.154 29 F -0.165 7.165 30 F -0.156 7.156 31 H 0.036 0.964 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.257 0.743 39 H 0.195 0.805 40 H 0.214 0.786 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 11.405 -12.239 -22.142 27.751 hybrid contribution -0.590 0.452 1.124 1.347 sum 10.815 -11.787 -21.018 26.413 Atomic orbital electron populations 1.21906 0.97083 1.00252 0.99948 1.18520 0.91467 0.92042 0.80410 0.97028 1.21583 1.31892 1.13053 0.90963 0.92060 1.25737 0.95066 0.95640 1.02000 1.70037 1.37346 1.23879 1.24393 0.85367 0.78184 0.78418 0.78768 1.18897 1.21226 1.19930 1.47432 1.50796 1.13310 1.22837 1.21744 1.02473 0.80702 1.00955 1.16120 0.79551 0.84560 0.80200 1.90872 1.64164 1.17361 1.78111 1.45107 1.55576 1.16424 1.21707 1.20225 0.90116 0.94868 0.88046 0.85939 1.19457 0.94819 0.98242 1.08799 1.17494 0.89335 0.84336 0.96976 1.91543 1.85096 1.48711 1.86101 1.21676 1.02426 0.93989 0.98939 1.21570 0.93461 0.95319 0.94052 1.21683 0.94927 1.00405 0.99740 1.17516 0.78581 0.93937 0.98755 1.91476 1.32626 1.93871 1.92717 1.21245 0.80597 0.78755 0.81434 1.93183 1.73823 1.67035 1.81386 1.93252 1.76213 1.68217 1.78804 1.93168 1.73080 1.81133 1.68261 0.96442 0.93100 0.91044 0.92622 0.92176 0.90044 0.90474 0.74289 0.80475 0.78625 0.80255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.64 8.95 71.98 0.64 -5.99 16 2 C 0.28 14.94 2.64 44.24 0.12 15.06 16 3 H 0.01 0.75 6.90 -2.39 -0.02 0.74 16 4 C -0.54 -29.58 8.37 25.60 0.21 -29.37 16 5 H 0.06 3.28 7.65 -2.91 -0.02 3.26 16 6 C 0.02 0.83 5.30 84.65 0.45 1.28 16 7 N -0.92 -53.54 11.32 21.44 0.24 -53.29 16 8 Si 0.97 43.40 29.54 68.60 2.03 45.42 16 9 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 10 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 11 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 12 N -0.61 -27.34 2.75 -844.85 -2.33 -29.67 16 13 C 0.08 2.78 9.44 127.77 1.21 3.99 16 14 C 0.69 31.34 7.81 179.05 1.40 32.74 16 15 O -0.62 -33.80 14.24 -3.99 -0.06 -33.86 16 16 N -0.73 -24.98 4.65 -461.42 -2.14 -27.12 16 17 C 0.18 5.60 2.16 44.24 0.10 5.70 16 18 H 0.12 4.37 6.71 -2.39 -0.02 4.36 16 19 C -0.21 -4.87 4.67 -19.78 -0.09 -4.97 16 20 C 0.14 2.72 7.24 22.37 0.16 2.88 16 21 F -0.14 -3.28 16.27 44.97 0.73 -2.55 16 22 C -0.15 -1.53 10.03 22.32 0.22 -1.31 16 23 C -0.03 -0.14 10.04 22.25 0.22 0.09 16 24 C -0.15 -1.38 10.02 22.32 0.22 -1.15 16 25 C 0.13 2.41 6.45 22.37 0.14 2.56 16 26 F -0.13 -2.70 12.84 44.97 0.58 -2.13 16 27 C 0.44 14.32 2.82 71.98 0.20 14.52 16 28 F -0.17 -5.23 14.66 44.97 0.66 -4.57 16 29 F -0.18 -7.41 15.67 44.97 0.70 -6.70 16 30 F -0.17 -5.27 17.02 44.97 0.77 -4.50 16 31 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.05 2.26 6.66 -2.39 -0.02 2.25 16 33 H 0.07 3.91 6.07 -2.38 -0.01 3.90 16 34 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 35 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.08 2.67 6.43 -2.39 -0.02 2.66 16 37 H 0.08 2.03 6.36 -2.38 -0.02 2.02 16 38 H 0.41 11.98 3.90 -92.71 -0.36 11.62 16 39 H 0.18 0.79 8.06 -2.91 -0.02 0.76 16 40 H 0.20 -0.72 8.06 -2.91 -0.02 -0.74 16 41 H 0.18 0.59 8.06 -2.91 -0.02 0.57 16 Total: -1.00 -76.22 355.67 7.16 -69.06 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.76 Total: 13.87 kcal Atomic # 6 Polarization: 30.82 SS G_CDS: 5.21 Total: 36.04 kcal Atomic # 7 Polarization: -105.86 SS G_CDS: -4.23 Total: -110.09 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -0.06 Total: -33.86 kcal Atomic # 9 Polarization: -23.89 SS G_CDS: 3.44 Total: -20.45 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -76.22 7.16 -69.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155658115.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.641 kcal (2) G-P(sol) polarization free energy of solvation -76.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -251.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds