Wall clock time and date at job start Tue Mar 31 2020 05:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47611 * 2 1 4 4 C 1.50693 * 109.47060 * 239.99112 * 2 1 3 5 5 H 1.08004 * 120.00659 * 239.99885 * 4 2 1 6 6 C 1.37881 * 119.99841 * 60.00553 * 4 2 1 7 7 N 1.31511 * 119.99965 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00002 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47266 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46922 * 119.99894 * 8 6 4 11 11 H 1.48501 * 109.47039 * 239.99981 * 8 6 4 12 12 N 1.46503 * 109.46797 * 119.99578 * 2 1 3 13 13 C 1.46498 * 119.99974 * 59.99953 * 12 2 1 14 14 C 1.34778 * 119.99951 * 240.00084 * 12 2 1 15 15 O 1.21587 * 119.99796 * 359.97438 * 14 12 2 16 16 N 1.34777 * 120.00129 * 180.02562 * 14 12 2 17 17 C 1.46502 * 119.99974 * 179.97438 * 16 14 12 18 18 H 1.08994 * 109.46968 * 34.99811 * 17 16 14 19 19 C 1.50698 * 109.46972 * 154.99918 * 17 16 14 20 20 C 1.38415 * 120.02708 * 224.99912 * 19 17 16 21 21 F 1.35099 * 120.00946 * 359.97438 * 20 19 17 22 22 C 1.38474 * 119.97981 * 179.97438 * 20 19 17 23 23 C 1.38210 * 120.02023 * 0.28104 * 22 20 19 24 24 C 1.38201 * 120.05118 * 359.44081 * 23 22 20 25 25 C 1.38420 * 120.02535 * 44.97419 * 19 17 16 26 26 F 1.35097 * 120.01373 * 0.02562 * 25 19 17 27 27 C 1.52999 * 109.47016 * 274.99419 * 17 16 14 28 28 F 1.39899 * 109.47411 * 300.00475 * 27 17 16 29 29 F 1.39904 * 109.47042 * 60.00494 * 27 17 16 30 30 F 1.39896 * 109.47239 * 179.97438 * 27 17 16 31 31 H 1.09005 * 109.46963 * 60.00354 * 1 2 3 32 32 H 1.09000 * 109.47636 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47446 * 300.00797 * 1 2 3 34 34 H 0.97004 * 120.00158 * 179.97438 * 7 6 4 35 35 H 1.09003 * 109.47356 * 269.99528 * 13 12 2 36 36 H 1.08998 * 109.47464 * 29.99914 * 13 12 2 37 37 H 1.09009 * 109.47064 * 150.00162 * 13 12 2 38 38 H 0.96997 * 119.99837 * 359.97438 * 16 14 12 39 39 H 1.08002 * 119.98641 * 179.97438 * 22 20 19 40 40 H 1.08000 * 119.96986 * 179.70463 * 23 22 20 41 41 H 1.08002 * 119.98829 * 180.25980 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2303 5 1 2.6532 -1.5887 -1.1312 6 6 1.6992 -0.2396 -2.4826 7 7 0.9437 0.8300 -2.6034 8 14 2.3225 -1.1200 -4.0078 9 1 3.1472 -2.2868 -3.6035 10 1 1.1677 -1.5870 -4.8163 11 1 3.1473 -0.1863 -4.8160 12 7 2.0182 -0.6905 1.1963 13 6 1.6643 -2.0931 1.4282 14 6 2.7931 -0.0355 2.0834 15 8 3.0872 1.1284 1.8907 16 7 3.2427 -0.6709 3.1837 17 6 4.0854 0.0410 4.1477 18 1 3.7685 1.0821 4.2080 19 6 3.9525 -0.6038 5.5033 20 6 3.7890 0.1820 6.6310 21 9 3.7488 1.5276 6.5170 22 6 3.6665 -0.4116 7.8761 23 6 3.7133 -1.7878 7.9937 24 6 3.8709 -2.5737 6.8678 25 6 3.9935 -1.9823 5.6216 26 9 4.1531 -2.7505 4.5218 27 6 5.5451 -0.0225 3.6937 28 9 5.9517 -1.3588 3.6163 29 9 5.6684 0.5761 2.4352 30 9 6.3497 0.6578 4.6139 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5140 0.8899 34 1 0.7097 1.1616 -3.4845 35 1 0.7374 -2.1442 1.9996 36 1 1.5293 -2.5969 0.4711 37 1 2.4627 -2.5818 1.9867 38 1 3.0083 -1.5995 3.3373 39 1 3.5393 0.2015 8.7562 40 1 3.6225 -2.2497 8.9657 41 1 3.9031 -3.6492 6.9603 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155658233.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:24 Heat of formation + Delta-G solvation = -225.609028 kcal Electronic energy + Delta-G solvation = -35439.039106 eV Core-core repulsion = 29962.086406 eV Total energy + Delta-G solvation = -5476.952699 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.111 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.99930 -49.47440 -49.39583 -47.48427 -47.30448 -39.89711 -39.15744 -36.01931 -34.93822 -32.98796 -31.65678 -30.80746 -29.38157 -28.00257 -26.12262 -25.19086 -24.28153 -23.45559 -22.29530 -21.21103 -19.54688 -18.69419 -18.40733 -18.37535 -17.99200 -17.47244 -17.36034 -16.50795 -16.33104 -16.04002 -15.96350 -15.69675 -15.49422 -14.90992 -14.81314 -14.52472 -14.31380 -14.26066 -14.02159 -13.83667 -13.55879 -13.48076 -13.47289 -13.22535 -13.10291 -12.86367 -12.53896 -12.50842 -12.39634 -12.02940 -11.78976 -11.62605 -11.48034 -11.03999 -10.82214 -10.67011 -10.24377 -10.14757 -9.63463 -9.40248 -9.24431 -9.18384 -9.11711 -8.40913 -7.59138 -6.04900 -4.12219 0.31738 0.47161 2.61245 2.70847 3.12533 3.28478 3.35013 3.36721 3.40225 3.49033 3.70587 3.88278 4.00406 4.16431 4.24440 4.30386 4.40471 4.50900 4.61233 4.65545 5.04358 5.17125 5.26726 5.32876 5.39817 5.49121 5.62471 5.63244 5.96928 6.18834 6.29577 6.36417 6.68362 6.81062 7.00144 7.13473 7.47932 7.70490 7.80595 8.07881 8.23367 8.62343 8.88136 9.18659 9.54373 11.00569 Molecular weight = 366.11amu Principal moments of inertia in cm(-1) A = 0.015496 B = 0.003165 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.506286 B = 8844.259561 C = 9046.810349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.272 3.728 3 H 0.066 0.934 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.601 5.601 13 C 0.084 3.916 14 C 0.699 3.301 15 O -0.579 6.579 16 N -0.745 5.745 17 C 0.176 3.824 18 H 0.144 0.856 19 C -0.187 4.187 20 C 0.163 3.837 21 F -0.118 7.118 22 C -0.164 4.164 23 C -0.048 4.048 24 C -0.163 4.163 25 C 0.153 3.847 26 F -0.115 7.115 27 C 0.436 3.564 28 F -0.179 7.179 29 F -0.157 7.157 30 F -0.183 7.183 31 H 0.094 0.906 32 H 0.029 0.971 33 H 0.011 0.989 34 H 0.263 0.737 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.046 0.954 38 H 0.403 0.597 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.578 -7.666 23.934 25.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.172 3.828 3 H 0.084 0.916 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.335 5.335 13 C -0.060 4.060 14 C 0.400 3.600 15 O -0.456 6.456 16 N -0.407 5.407 17 C 0.066 3.934 18 H 0.161 0.839 19 C -0.190 4.190 20 C 0.143 3.857 21 F -0.097 7.097 22 C -0.183 4.183 23 C -0.066 4.066 24 C -0.182 4.182 25 C 0.133 3.867 26 F -0.094 7.094 27 C 0.379 3.621 28 F -0.161 7.161 29 F -0.138 7.138 30 F -0.165 7.165 31 H 0.113 0.887 32 H 0.048 0.952 33 H 0.030 0.970 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.105 0.895 37 H 0.064 0.936 38 H 0.243 0.757 39 H 0.168 0.832 40 H 0.167 0.833 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.683 -6.672 23.479 24.854 hybrid contribution 0.519 -0.913 -1.131 1.544 sum 5.202 -7.585 22.347 24.166 Atomic orbital electron populations 1.22101 0.98156 0.99379 1.00822 1.18922 0.90654 0.94385 0.78826 0.91624 1.21370 1.31673 1.13053 0.90259 0.92175 1.24879 0.94954 0.94994 0.98926 1.69888 1.36472 1.22579 1.23636 0.86435 0.78560 0.79608 0.82752 1.19824 1.20977 1.20901 1.47547 1.50950 1.11455 1.23565 1.21553 0.98244 0.83548 1.02698 1.15955 0.79539 0.85022 0.79447 1.90910 1.62713 1.15303 1.76650 1.45392 1.55281 1.16215 1.23777 1.20244 0.86259 1.01803 0.85099 0.83862 1.19603 1.11773 0.93078 0.94525 1.17094 0.98413 0.77343 0.92854 1.91588 1.93088 1.28323 1.96661 1.21248 1.04728 0.96112 0.96222 1.20977 0.94413 0.92303 0.98904 1.21251 1.04493 1.02038 0.90420 1.17227 0.98668 0.86930 0.83894 1.91529 1.92138 1.74385 1.51302 1.21133 0.90515 0.74000 0.76428 1.93183 1.92142 1.34579 1.96187 1.93318 1.96415 1.83232 1.40849 1.93163 1.76293 1.80276 1.66740 0.88723 0.95187 0.97010 0.92747 0.93878 0.89528 0.93574 0.75718 0.83244 0.83331 0.83269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 8.97 37.16 0.33 -3.18 16 2 C 0.27 7.06 2.64 -69.09 -0.18 6.88 16 3 H 0.07 1.98 6.90 -51.93 -0.36 1.62 16 4 C -0.52 -14.36 7.99 -34.44 -0.28 -14.64 16 5 H 0.06 1.63 7.33 -52.48 -0.38 1.25 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -25.29 11.32 55.43 0.63 -24.66 16 8 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 9 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 N -0.60 -13.20 2.75 -181.01 -0.50 -13.70 16 13 C 0.08 1.44 9.20 59.85 0.55 1.99 16 14 C 0.70 15.17 7.81 -86.92 -0.68 14.49 16 15 O -0.58 -14.67 14.24 5.29 0.08 -14.59 16 16 N -0.74 -12.56 4.65 -59.81 -0.28 -12.84 16 17 C 0.18 2.69 2.16 -69.08 -0.15 2.54 16 18 H 0.14 2.32 6.71 -51.93 -0.35 1.97 16 19 C -0.19 -2.19 4.67 -104.49 -0.49 -2.68 16 20 C 0.16 1.64 7.24 -39.43 -0.29 1.35 16 21 F -0.12 -1.35 16.27 2.25 0.04 -1.31 16 22 C -0.16 -1.08 10.03 -39.50 -0.40 -1.48 16 23 C -0.05 -0.24 10.04 -39.61 -0.40 -0.64 16 24 C -0.16 -1.09 10.02 -39.51 -0.40 -1.49 16 25 C 0.15 1.55 6.45 -39.43 -0.25 1.29 16 26 F -0.12 -1.33 12.84 2.25 0.03 -1.30 16 27 C 0.44 7.12 2.82 37.16 0.10 7.22 16 28 F -0.18 -2.82 14.66 2.25 0.03 -2.79 16 29 F -0.16 -3.13 15.67 2.25 0.04 -3.10 16 30 F -0.18 -2.74 17.02 2.25 0.04 -2.70 16 31 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 32 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 33 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 1.57 7.02 -51.93 -0.36 1.20 16 37 H 0.05 0.67 6.36 -51.92 -0.33 0.34 16 38 H 0.40 5.93 3.90 -40.82 -0.16 5.77 16 39 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 40 H 0.15 0.26 8.06 -52.49 -0.42 -0.17 16 41 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 LS Contribution 356.36 15.07 5.37 5.37 Total: -1.00 -32.83 356.36 -6.07 -38.89 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -3.91 Total: 3.07 kcal Atomic # 6 Polarization: 15.97 SS G_CDS: -2.61 Total: 13.36 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: -0.15 Total: -51.20 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: 0.08 Total: -14.59 kcal Atomic # 9 Polarization: -11.38 SS G_CDS: 0.17 Total: -11.21 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.83 -6.07 -38.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155658233.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.714 kcal (2) G-P(sol) polarization free energy of solvation -32.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds