Wall clock time and date at job start Tue Mar 31 2020 06:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38310 * 119.96016 * 2 1 4 4 C 1.38279 * 120.15057 * 179.97438 * 3 2 1 5 5 C 1.38115 * 120.07446 * 359.74158 * 4 3 2 6 6 C 1.38916 * 119.92399 * 0.52967 * 5 4 3 7 7 N 1.39718 * 120.07375 * 179.74496 * 6 5 4 8 8 C 1.34780 * 120.00577 * 337.22066 * 7 6 5 9 9 O 1.21375 * 119.99230 * 354.31998 * 8 7 6 10 10 C 1.49349 * 119.99963 * 174.32113 * 8 7 6 11 11 O 1.21351 * 120.00285 * 5.56095 * 10 8 7 12 12 N 1.34783 * 119.99768 * 185.56131 * 10 8 7 13 13 C 1.46506 * 119.99761 * 5.06936 * 12 10 8 14 14 C 1.50707 * 109.46987 * 275.70696 * 13 12 10 15 15 H 1.08007 * 119.99594 * 0.02562 * 14 13 12 16 16 C 1.37868 * 120.00079 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99883 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00051 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46794 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46938 * 120.00118 * 18 16 14 21 21 H 1.48501 * 109.47125 * 240.00642 * 18 16 14 22 22 C 1.46495 * 120.00119 * 185.06375 * 12 10 8 23 23 C 1.50700 * 109.47445 * 270.00093 * 22 12 10 24 24 C 1.38666 * 120.41698 * 270.25248 * 23 22 12 25 25 C 1.38639 * 118.41810 * 180.23886 * 24 23 22 26 26 C 1.38229 * 119.15844 * 359.75341 * 25 24 23 27 27 N 1.31849 * 120.76593 * 0.02562 * 26 25 24 28 28 C 1.31888 * 121.72694 * 359.97438 * 27 26 25 29 29 C 1.38075 * 119.95918 * 180.02562 * 2 1 3 30 30 C 1.50699 * 120.03997 * 0.03287 * 29 2 1 31 31 H 1.08993 * 109.48041 * 269.98131 * 1 2 3 32 32 H 1.09003 * 109.46936 * 29.98906 * 1 2 3 33 33 H 1.09008 * 109.47173 * 149.98215 * 1 2 3 34 34 H 1.08000 * 119.92933 * 359.97195 * 3 2 1 35 35 H 1.08001 * 119.96094 * 179.97438 * 4 3 2 36 36 H 1.07999 * 120.04116 * 180.27904 * 5 4 3 37 37 H 0.97007 * 119.99410 * 157.21786 * 7 6 5 38 38 H 1.08997 * 109.47523 * 35.70713 * 13 12 10 39 39 H 1.08994 * 109.47309 * 155.71255 * 13 12 10 40 40 H 0.97005 * 119.99841 * 179.97438 * 17 16 14 41 41 H 1.09001 * 109.46941 * 150.00274 * 22 12 10 42 42 H 1.09004 * 109.47087 * 30.00483 * 22 12 10 43 43 H 1.07998 * 120.79589 * 359.97053 * 24 23 22 44 44 H 1.07992 * 120.41830 * 179.72566 * 25 24 23 45 45 H 1.07994 * 119.61608 * 180.02562 * 26 25 24 46 46 H 1.07995 * 119.61898 * 179.97438 * 28 27 26 47 47 H 1.09005 * 109.46816 * 269.96930 * 30 29 2 48 48 H 1.08993 * 109.47100 * 29.96883 * 30 29 2 49 49 H 1.09003 * 109.47051 * 149.97360 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1983 0.0000 4 6 3.5805 1.2029 0.0005 5 6 4.2766 0.0100 0.0065 6 6 3.5860 -1.1954 0.0008 7 7 4.2871 -2.4039 0.0013 8 6 5.5581 -2.4460 -0.4449 9 8 6.0595 -1.4590 -0.9424 10 6 6.3495 -3.7072 -0.3272 11 8 5.8188 -4.7211 0.0764 12 7 7.6531 -3.7191 -0.6692 13 6 8.3219 -2.4725 -1.0502 14 6 8.0743 -2.1957 -2.5108 15 1 7.4781 -2.8797 -3.0965 16 6 8.6080 -1.0687 -3.0990 17 7 9.3336 -0.2356 -2.3856 18 14 8.3005 -0.7253 -4.9093 19 1 7.4607 -1.8075 -5.4827 20 1 7.5993 0.5757 -5.0541 21 1 9.5977 -0.6716 -5.6302 22 6 8.4014 -4.9785 -0.6600 23 6 9.0160 -5.1877 0.7000 24 6 10.2832 -4.6993 0.9804 25 6 10.8107 -4.9197 2.2434 26 6 10.0591 -5.6096 3.1762 27 7 8.8554 -6.0559 2.8757 28 6 8.3221 -5.8646 1.6847 29 6 2.1965 -1.1963 -0.0005 30 6 1.4430 -2.5013 -0.0019 31 1 -0.3635 -0.0003 1.0275 32 1 -0.3633 0.8901 -0.5137 33 1 -0.3634 -0.8899 -0.5141 34 1 1.6559 2.1325 -0.0005 35 1 4.1167 2.1403 0.0001 36 1 5.3566 0.0142 0.0114 37 1 3.8589 -3.2128 0.3230 38 1 7.9269 -1.6509 -0.4527 39 1 9.3935 -2.5667 -0.8749 40 1 9.7094 0.5571 -2.7996 41 1 9.1890 -4.9387 -1.4124 42 1 7.7259 -5.8041 -0.8844 43 1 10.8476 -4.1637 0.2314 44 1 11.7963 -4.5574 2.4952 45 1 10.4626 -5.7851 4.1624 46 1 7.3334 -6.2454 1.4752 47 1 1.2613 -2.8170 1.0255 48 1 0.4907 -2.3705 -0.5156 49 1 2.0321 -3.2605 -0.5164 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163756478.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:40 Heat of formation + Delta-G solvation = 10.517603 kcal Electronic energy + Delta-G solvation = -33278.925184 eV Core-core repulsion = 28978.705157 eV Total energy + Delta-G solvation = -4300.220026 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.78965 -40.05587 -39.21250 -37.76667 -35.84199 -34.51379 -33.25099 -32.94189 -32.12488 -31.37923 -30.66476 -27.67363 -27.48341 -26.55142 -26.25304 -24.20901 -23.46037 -22.78277 -22.11740 -21.04438 -20.69438 -19.16721 -17.55793 -17.02424 -16.69764 -16.62775 -16.24503 -15.81958 -15.56034 -15.45373 -15.22374 -15.02962 -14.56925 -14.31213 -14.18808 -13.79097 -13.57186 -13.50509 -13.14729 -12.93943 -12.90420 -12.86746 -12.73536 -12.53811 -12.38711 -12.01249 -11.92506 -11.83413 -11.61732 -11.43891 -11.20324 -11.01335 -10.88113 -10.82126 -10.55394 -10.08288 -10.04815 -9.81640 -9.63557 -9.31536 -8.99816 -8.67666 -8.43101 -8.30893 -8.03877 -7.73266 -6.08596 -4.10137 1.21649 1.37683 1.45152 1.55699 2.15554 2.84414 3.27402 3.35996 3.39032 3.69124 3.87099 4.03948 4.18815 4.42087 4.59940 4.81695 4.88605 4.94955 5.00151 5.06281 5.08702 5.16994 5.17409 5.22816 5.29004 5.43131 5.47467 5.52540 5.60170 5.63637 5.78179 5.79652 5.80954 5.88710 5.95175 6.00344 6.01159 6.27028 6.27393 6.44267 6.46439 6.50658 6.63452 6.73685 6.79659 6.86719 7.21754 7.24673 7.31536 7.53834 7.79261 7.95163 8.10759 8.11939 8.25548 8.55961 8.88834 9.52898 11.00412 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.007285 B = 0.003653 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3842.341609 B = 7664.034309 C =10343.216056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.072 4.072 3 C -0.144 4.144 4 C -0.097 4.097 5 C -0.135 4.135 6 C 0.165 3.835 7 N -0.657 5.657 8 C 0.484 3.516 9 O -0.422 6.422 10 C 0.510 3.490 11 O -0.556 6.556 12 N -0.556 5.556 13 C 0.234 3.766 14 C -0.511 4.511 15 H 0.055 0.945 16 C 0.071 3.929 17 N -0.891 5.891 18 Si 0.892 3.108 19 H -0.275 1.275 20 H -0.283 1.283 21 H -0.285 1.285 22 C 0.159 3.841 23 C -0.150 4.150 24 C -0.056 4.056 25 C -0.178 4.178 26 C 0.091 3.909 27 N -0.492 5.492 28 C 0.118 3.882 29 C -0.125 4.125 30 C -0.116 4.116 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.152 0.848 37 H 0.415 0.585 38 H 0.059 0.941 39 H 0.033 0.967 40 H 0.261 0.739 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.138 0.862 44 H 0.132 0.868 45 H 0.151 0.849 46 H 0.160 0.840 47 H 0.069 0.931 48 H 0.072 0.928 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.407 -4.009 7.689 12.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.072 4.072 3 C -0.163 4.163 4 C -0.116 4.116 5 C -0.155 4.155 6 C 0.069 3.931 7 N -0.304 5.304 8 C 0.266 3.734 9 O -0.289 6.289 10 C 0.293 3.707 11 O -0.437 6.437 12 N -0.285 5.285 13 C 0.115 3.885 14 C -0.550 4.550 15 H 0.073 0.927 16 C -0.131 4.131 17 N -0.530 5.530 18 Si 0.721 3.279 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.211 1.211 22 C 0.035 3.965 23 C -0.153 4.153 24 C -0.083 4.083 25 C -0.198 4.198 26 C -0.066 4.066 27 N -0.201 5.201 28 C -0.039 4.039 29 C -0.128 4.128 30 C -0.173 4.173 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.170 0.830 37 H 0.252 0.748 38 H 0.077 0.923 39 H 0.051 0.949 40 H 0.071 0.929 41 H 0.115 0.885 42 H 0.107 0.893 43 H 0.156 0.844 44 H 0.150 0.850 45 H 0.168 0.832 46 H 0.177 0.823 47 H 0.087 0.913 48 H 0.091 0.909 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.546 -4.133 8.114 12.488 hybrid contribution 0.342 0.611 -1.599 1.746 sum -8.203 -3.522 6.515 11.052 Atomic orbital electron populations 1.20814 0.91402 1.02637 1.02075 1.19439 0.95554 0.92072 1.00171 1.20918 0.94272 0.97091 1.04049 1.21030 0.93893 0.97855 0.98818 1.21598 1.02352 0.90486 1.01097 1.17606 0.90183 0.85716 0.99549 1.43273 1.13480 1.10404 1.63270 1.20376 0.82315 0.90373 0.80344 1.90977 1.67664 1.34739 1.35499 1.19807 0.83407 0.88182 0.79348 1.90636 1.70840 1.34619 1.47556 1.48279 1.08023 1.10905 1.61320 1.19896 0.92598 0.78974 0.96997 1.21188 1.32288 1.07844 0.93656 0.92663 1.24763 0.94907 0.95546 0.97909 1.69914 1.34287 1.12900 1.35876 0.86534 0.77799 0.78398 0.85208 1.19948 1.20923 1.21101 1.20306 0.96347 0.87284 0.92526 1.21349 0.95546 0.99763 0.98680 1.21657 0.94654 0.95085 0.96861 1.22119 1.01673 1.01355 0.94670 1.22727 0.90402 0.94197 0.99264 1.67720 1.12257 1.19667 1.20407 1.22862 0.99271 0.94063 0.87689 1.19363 0.91328 0.95648 1.06429 1.20776 1.00187 0.94128 1.02199 0.91355 0.91758 0.91313 0.86446 0.85865 0.83039 0.74758 0.92304 0.94927 0.92883 0.88453 0.89286 0.84378 0.84961 0.83206 0.82294 0.91251 0.90888 0.91745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 9.60 36.01 0.35 -0.68 16 2 C -0.07 -0.91 5.88 -104.66 -0.62 -1.52 16 3 C -0.14 -1.88 9.70 -39.54 -0.38 -2.27 16 4 C -0.10 -1.45 10.04 -39.61 -0.40 -1.85 16 5 C -0.14 -2.37 8.74 -39.38 -0.34 -2.71 16 6 C 0.17 2.71 6.44 -83.75 -0.54 2.17 16 7 N -0.66 -10.94 5.01 -10.30 -0.05 -10.99 16 8 C 0.48 9.66 7.51 -11.63 -0.09 9.57 16 9 O -0.42 -9.74 9.18 5.48 0.05 -9.69 16 10 C 0.51 10.09 7.67 -11.63 -0.09 10.00 16 11 O -0.56 -10.62 15.37 5.50 0.08 -10.54 16 12 N -0.56 -11.06 2.46 -176.98 -0.43 -11.49 16 13 C 0.23 5.48 4.76 -5.19 -0.02 5.45 16 14 C -0.51 -13.31 7.69 -34.44 -0.26 -13.57 16 15 H 0.06 1.47 7.81 -52.48 -0.41 1.06 16 16 C 0.07 1.92 5.46 -17.83 -0.10 1.82 16 17 N -0.89 -24.92 13.29 55.43 0.74 -24.18 16 18 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.16 2.63 5.49 -5.20 -0.03 2.60 16 23 C -0.15 -2.34 5.48 -104.48 -0.57 -2.92 16 24 C -0.06 -0.81 9.86 -39.28 -0.39 -1.19 16 25 C -0.18 -2.25 10.11 -39.44 -0.40 -2.65 16 26 C 0.09 1.20 11.18 -17.55 -0.20 1.00 16 27 N -0.49 -7.67 10.36 -13.25 -0.14 -7.80 16 28 C 0.12 1.87 10.75 -17.55 -0.19 1.68 16 29 C -0.12 -1.72 5.90 -104.42 -0.62 -2.33 16 30 C -0.12 -1.25 9.04 36.01 0.33 -0.92 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 33 H 0.07 0.57 5.94 -51.92 -0.31 0.26 16 34 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 35 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.15 3.04 5.64 -52.49 -0.30 2.74 16 37 H 0.42 6.03 6.79 -40.82 -0.28 5.75 16 38 H 0.06 1.53 5.95 -51.93 -0.31 1.22 16 39 H 0.03 0.78 8.03 -51.93 -0.42 0.36 16 40 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 41 H 0.10 1.54 8.03 -51.93 -0.42 1.12 16 42 H 0.09 1.39 7.45 -51.93 -0.39 1.00 16 43 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 44 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 45 H 0.15 1.49 8.06 -52.49 -0.42 1.06 16 46 H 0.16 2.50 7.41 -52.49 -0.39 2.11 16 47 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.07 0.66 5.94 -51.93 -0.31 0.36 16 49 H 0.06 0.71 6.95 -51.93 -0.36 0.35 16 LS Contribution 406.74 15.07 6.13 6.13 Total: -1.00 -30.97 406.74 -9.60 -40.57 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -6.39 Total: 10.04 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -4.56 Total: 1.67 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: 0.11 Total: -54.47 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: 0.13 Total: -20.23 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -30.97 -9.60 -40.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163756478.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.083 kcal (2) G-P(sol) polarization free energy of solvation -30.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds