Wall clock time and date at job start Tue Mar 31 2020 06:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38310 * 119.96016 * 2 1 4 4 C 1.38279 * 120.15057 * 179.97438 * 3 2 1 5 5 C 1.38115 * 120.07446 * 359.74158 * 4 3 2 6 6 C 1.38916 * 119.92399 * 0.52967 * 5 4 3 7 7 N 1.39718 * 120.07375 * 179.74496 * 6 5 4 8 8 C 1.34780 * 120.00577 * 337.22066 * 7 6 5 9 9 O 1.21375 * 119.99230 * 354.31998 * 8 7 6 10 10 C 1.49349 * 119.99963 * 174.32113 * 8 7 6 11 11 O 1.21351 * 120.00285 * 5.56095 * 10 8 7 12 12 N 1.34783 * 119.99768 * 185.56131 * 10 8 7 13 13 C 1.46506 * 119.99761 * 5.06936 * 12 10 8 14 14 C 1.50707 * 109.46987 * 275.70696 * 13 12 10 15 15 H 1.08007 * 119.99594 * 0.02562 * 14 13 12 16 16 C 1.37868 * 120.00079 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99883 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00051 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46794 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46938 * 120.00118 * 18 16 14 21 21 H 1.48501 * 109.47125 * 240.00642 * 18 16 14 22 22 C 1.46495 * 120.00119 * 185.06375 * 12 10 8 23 23 C 1.50700 * 109.47445 * 270.00093 * 22 12 10 24 24 C 1.38666 * 120.41698 * 270.25248 * 23 22 12 25 25 C 1.38639 * 118.41810 * 180.23886 * 24 23 22 26 26 C 1.38229 * 119.15844 * 359.75341 * 25 24 23 27 27 N 1.31849 * 120.76593 * 0.02562 * 26 25 24 28 28 C 1.31888 * 121.72694 * 359.97438 * 27 26 25 29 29 C 1.38075 * 119.95918 * 180.02562 * 2 1 3 30 30 C 1.50699 * 120.03997 * 0.03287 * 29 2 1 31 31 H 1.08993 * 109.48041 * 269.98131 * 1 2 3 32 32 H 1.09003 * 109.46936 * 29.98906 * 1 2 3 33 33 H 1.09008 * 109.47173 * 149.98215 * 1 2 3 34 34 H 1.08000 * 119.92933 * 359.97195 * 3 2 1 35 35 H 1.08001 * 119.96094 * 179.97438 * 4 3 2 36 36 H 1.07999 * 120.04116 * 180.27904 * 5 4 3 37 37 H 0.97007 * 119.99410 * 157.21786 * 7 6 5 38 38 H 1.08997 * 109.47523 * 35.70713 * 13 12 10 39 39 H 1.08994 * 109.47309 * 155.71255 * 13 12 10 40 40 H 0.97005 * 119.99841 * 179.97438 * 17 16 14 41 41 H 1.09001 * 109.46941 * 150.00274 * 22 12 10 42 42 H 1.09004 * 109.47087 * 30.00483 * 22 12 10 43 43 H 1.07998 * 120.79589 * 359.97053 * 24 23 22 44 44 H 1.07992 * 120.41830 * 179.72566 * 25 24 23 45 45 H 1.07994 * 119.61608 * 180.02562 * 26 25 24 46 46 H 1.07995 * 119.61898 * 179.97438 * 28 27 26 47 47 H 1.09005 * 109.46816 * 269.96930 * 30 29 2 48 48 H 1.08993 * 109.47100 * 29.96883 * 30 29 2 49 49 H 1.09003 * 109.47051 * 149.97360 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1983 0.0000 4 6 3.5805 1.2029 0.0005 5 6 4.2766 0.0100 0.0065 6 6 3.5860 -1.1954 0.0008 7 7 4.2871 -2.4039 0.0013 8 6 5.5581 -2.4460 -0.4449 9 8 6.0595 -1.4590 -0.9424 10 6 6.3495 -3.7072 -0.3272 11 8 5.8188 -4.7211 0.0764 12 7 7.6531 -3.7191 -0.6692 13 6 8.3219 -2.4725 -1.0502 14 6 8.0743 -2.1957 -2.5108 15 1 7.4781 -2.8797 -3.0965 16 6 8.6080 -1.0687 -3.0990 17 7 9.3336 -0.2356 -2.3856 18 14 8.3005 -0.7253 -4.9093 19 1 7.4607 -1.8075 -5.4827 20 1 7.5993 0.5757 -5.0541 21 1 9.5977 -0.6716 -5.6302 22 6 8.4014 -4.9785 -0.6600 23 6 9.0160 -5.1877 0.7000 24 6 10.2832 -4.6993 0.9804 25 6 10.8107 -4.9197 2.2434 26 6 10.0591 -5.6096 3.1762 27 7 8.8554 -6.0559 2.8757 28 6 8.3221 -5.8646 1.6847 29 6 2.1965 -1.1963 -0.0005 30 6 1.4430 -2.5013 -0.0019 31 1 -0.3635 -0.0003 1.0275 32 1 -0.3633 0.8901 -0.5137 33 1 -0.3634 -0.8899 -0.5141 34 1 1.6559 2.1325 -0.0005 35 1 4.1167 2.1403 0.0001 36 1 5.3566 0.0142 0.0114 37 1 3.8589 -3.2128 0.3230 38 1 7.9269 -1.6509 -0.4527 39 1 9.3935 -2.5667 -0.8749 40 1 9.7094 0.5571 -2.7996 41 1 9.1890 -4.9387 -1.4124 42 1 7.7259 -5.8041 -0.8844 43 1 10.8476 -4.1637 0.2314 44 1 11.7963 -4.5574 2.4952 45 1 10.4626 -5.7851 4.1624 46 1 7.3334 -6.2454 1.4752 47 1 1.2613 -2.8170 1.0255 48 1 0.4907 -2.3705 -0.5156 49 1 2.0321 -3.2605 -0.5164 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163756478.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:39 Heat of formation + Delta-G solvation = -6.472460 kcal Electronic energy + Delta-G solvation = -33279.661928 eV Core-core repulsion = 28978.705157 eV Total energy + Delta-G solvation = -4300.956771 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.168 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.23343 -41.23816 -40.49033 -39.21383 -37.40331 -35.88715 -34.77709 -34.28048 -33.50020 -32.61729 -31.78274 -29.38720 -28.65903 -27.90641 -27.23323 -25.72640 -24.84954 -24.32277 -23.31485 -22.18283 -21.96478 -20.58872 -19.06329 -18.68773 -18.21608 -17.91105 -17.56166 -17.06438 -17.01519 -16.73497 -16.69640 -16.40655 -16.14086 -15.61369 -15.34635 -15.13333 -14.85806 -14.63041 -14.46821 -14.32985 -14.14960 -14.03535 -13.91833 -13.66497 -13.61488 -13.44781 -13.18573 -13.02327 -12.95573 -12.82108 -12.62838 -12.53355 -12.38774 -12.23384 -11.93982 -11.83181 -11.72037 -11.37831 -10.81872 -10.59160 -10.50501 -10.27178 -9.93657 -9.69151 -9.47158 -8.98370 -8.15023 -6.21441 0.05659 0.08393 0.31755 0.42542 0.73646 1.35711 1.38954 1.41793 1.48426 2.17874 2.38532 2.56008 2.84081 2.93980 3.20014 3.35315 3.52249 3.85107 3.85534 3.87864 3.92064 4.07467 4.08326 4.15425 4.24981 4.40458 4.43501 4.50415 4.62765 4.69152 4.73131 4.76420 4.76928 4.86137 4.87608 4.90021 4.97769 5.09394 5.17976 5.23628 5.30530 5.32276 5.35522 5.47511 5.50525 5.62636 5.69522 5.74835 5.76674 6.07325 6.12576 6.12884 6.26467 6.72787 6.81974 6.99405 7.04002 7.44024 8.93509 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.007285 B = 0.003653 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3842.341609 B = 7664.034309 C =10343.216056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.071 4.071 3 C -0.138 4.138 4 C -0.110 4.110 5 C -0.165 4.165 6 C 0.137 3.863 7 N -0.641 5.641 8 C 0.480 3.520 9 O -0.463 6.463 10 C 0.507 3.493 11 O -0.549 6.549 12 N -0.559 5.559 13 C 0.256 3.744 14 C -0.510 4.510 15 H 0.045 0.955 16 C 0.026 3.974 17 N -0.920 5.920 18 Si 0.946 3.054 19 H -0.273 1.273 20 H -0.289 1.289 21 H -0.273 1.273 22 C 0.159 3.841 23 C -0.162 4.162 24 C -0.068 4.068 25 C -0.170 4.170 26 C 0.091 3.909 27 N -0.512 5.512 28 C 0.107 3.893 29 C -0.123 4.123 30 C -0.116 4.116 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.149 0.851 35 H 0.131 0.869 36 H 0.115 0.885 37 H 0.424 0.576 38 H 0.032 0.968 39 H 0.027 0.973 40 H 0.262 0.738 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.140 0.860 44 H 0.166 0.834 45 H 0.186 0.814 46 H 0.153 0.847 47 H 0.087 0.913 48 H 0.096 0.904 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.223 -4.414 8.241 13.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.072 4.072 3 C -0.156 4.156 4 C -0.129 4.129 5 C -0.185 4.185 6 C 0.042 3.958 7 N -0.289 5.289 8 C 0.262 3.738 9 O -0.333 6.333 10 C 0.290 3.710 11 O -0.430 6.430 12 N -0.288 5.288 13 C 0.136 3.864 14 C -0.548 4.548 15 H 0.063 0.937 16 C -0.173 4.173 17 N -0.561 5.561 18 Si 0.773 3.227 19 H -0.198 1.198 20 H -0.215 1.215 21 H -0.198 1.198 22 C 0.036 3.964 23 C -0.165 4.165 24 C -0.094 4.094 25 C -0.189 4.189 26 C -0.066 4.066 27 N -0.221 5.221 28 C -0.049 4.049 29 C -0.126 4.126 30 C -0.172 4.172 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.167 0.833 35 H 0.149 0.851 36 H 0.133 0.867 37 H 0.264 0.736 38 H 0.049 0.951 39 H 0.045 0.955 40 H 0.071 0.929 41 H 0.120 0.880 42 H 0.115 0.885 43 H 0.158 0.842 44 H 0.184 0.816 45 H 0.203 0.797 46 H 0.170 0.830 47 H 0.106 0.894 48 H 0.114 0.886 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.399 -4.582 8.680 14.299 hybrid contribution 0.824 0.744 -1.651 1.990 sum -9.575 -3.838 7.029 12.482 Atomic orbital electron populations 1.20903 0.88193 1.04018 1.03556 1.19967 0.97790 0.91268 0.98175 1.21302 0.93330 0.98851 1.02158 1.21200 0.95223 0.97220 0.99258 1.21439 1.00920 0.92407 1.03754 1.17831 0.91474 0.84913 1.01582 1.43109 1.12421 1.11170 1.62174 1.20525 0.83234 0.89896 0.80153 1.90975 1.68702 1.35799 1.37798 1.19876 0.83474 0.88310 0.79379 1.90624 1.70658 1.34353 1.47337 1.48192 1.08249 1.10988 1.61403 1.19363 0.91998 0.79783 0.95279 1.21341 1.31301 1.07445 0.94761 0.93706 1.25419 0.95011 0.95578 1.01340 1.70005 1.35429 1.13367 1.37253 0.85698 0.77997 0.77700 0.81352 1.19804 1.21496 1.19799 1.20439 0.96402 0.85834 0.93676 1.21217 0.96287 1.00901 0.98058 1.21843 0.94382 0.95153 0.98033 1.22477 1.02846 1.00096 0.93466 1.23354 0.89479 0.93002 1.00771 1.67735 1.13620 1.20522 1.20175 1.22779 0.99283 0.94721 0.88140 1.19760 0.90162 0.97782 1.04884 1.20873 1.00591 0.92171 1.03605 0.89627 0.90307 0.90095 0.83318 0.85117 0.86720 0.73633 0.95060 0.95510 0.92885 0.87993 0.88498 0.84192 0.81637 0.79711 0.82957 0.89428 0.88585 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 9.60 71.24 0.68 -0.86 16 2 C -0.07 -1.62 5.88 -19.89 -0.12 -1.74 16 3 C -0.14 -3.35 9.70 22.30 0.22 -3.13 16 4 C -0.11 -3.37 10.04 22.25 0.22 -3.15 16 5 C -0.16 -6.15 8.74 22.40 0.20 -5.96 16 6 C 0.14 4.61 6.44 38.22 0.25 4.86 16 7 N -0.64 -22.18 5.01 -304.84 -1.53 -23.71 16 8 C 0.48 20.25 7.51 87.24 0.66 20.91 16 9 O -0.46 -22.95 9.18 -3.32 -0.03 -22.98 16 10 C 0.51 20.85 7.67 87.24 0.67 21.51 16 11 O -0.55 -21.37 15.37 -3.25 -0.05 -21.42 16 12 N -0.56 -23.13 2.46 -832.20 -2.04 -25.18 16 13 C 0.26 12.58 4.76 85.63 0.41 12.99 16 14 C -0.51 -27.50 7.69 25.60 0.20 -27.30 16 15 H 0.04 2.46 7.81 -2.91 -0.02 2.44 16 16 C 0.03 1.43 5.46 84.65 0.46 1.89 16 17 N -0.92 -53.12 13.29 21.44 0.28 -52.84 16 18 Si 0.95 44.57 29.54 68.60 2.03 46.60 16 19 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 20 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 22 C 0.16 5.38 5.49 85.63 0.47 5.85 16 23 C -0.16 -5.10 5.48 -19.77 -0.11 -5.21 16 24 C -0.07 -1.92 9.86 22.47 0.22 -1.70 16 25 C -0.17 -3.95 10.11 22.36 0.23 -3.73 16 26 C 0.09 2.20 11.18 84.69 0.95 3.15 16 27 N -0.51 -15.54 10.36 -195.85 -2.03 -17.57 16 28 C 0.11 3.42 10.75 84.67 0.91 4.33 16 29 C -0.12 -3.23 5.90 -19.73 -0.12 -3.35 16 30 C -0.12 -2.21 9.04 71.24 0.64 -1.56 16 31 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 0.92 8.08 -2.39 -0.02 0.90 16 33 H 0.08 0.97 5.94 -2.38 -0.01 0.95 16 34 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 35 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 36 H 0.11 5.12 5.64 -2.91 -0.02 5.10 16 37 H 0.42 12.52 6.79 -92.70 -0.63 11.89 16 38 H 0.03 1.74 5.95 -2.39 -0.01 1.73 16 39 H 0.03 1.34 8.03 -2.39 -0.02 1.32 16 40 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 41 H 0.10 3.30 8.03 -2.39 -0.02 3.28 16 42 H 0.10 3.08 7.45 -2.38 -0.02 3.07 16 43 H 0.14 3.87 8.06 -2.91 -0.02 3.84 16 44 H 0.17 2.71 8.06 -2.91 -0.02 2.69 16 45 H 0.19 3.05 8.06 -2.91 -0.02 3.03 16 46 H 0.15 4.91 7.41 -2.91 -0.02 4.88 16 47 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 48 H 0.10 1.39 5.94 -2.39 -0.01 1.38 16 49 H 0.06 1.18 6.95 -2.39 -0.02 1.16 16 Total: -1.00 -70.03 406.74 4.03 -66.00 By element: Atomic # 1 Polarization: 32.91 SS G_CDS: 0.37 Total: 33.28 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: 7.03 Total: 17.81 kcal Atomic # 7 Polarization: -113.97 SS G_CDS: -5.32 Total: -119.29 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: -0.08 Total: -44.40 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -70.03 4.03 -66.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163756478.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.524 kcal (2) G-P(sol) polarization free energy of solvation -70.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds