Wall clock time and date at job start Tue Mar 31 2020 06:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 120.00081 * 2 1 4 4 H 1.48504 * 109.46714 * 269.99914 * 3 2 1 5 5 H 1.48500 * 109.47048 * 29.99907 * 3 2 1 6 6 H 1.48504 * 109.47125 * 149.99839 * 3 2 1 7 7 C 1.37875 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00051 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00138 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47097 * 179.97438 * 9 7 2 11 11 C 1.46502 * 119.99976 * 264.98584 * 10 9 7 12 12 C 1.50696 * 109.46913 * 274.29134 * 11 10 9 13 13 C 1.34516 * 125.79425 * 89.71948 * 12 11 10 14 14 C 1.41373 * 106.84519 * 179.88763 * 13 12 11 15 15 C 1.34520 * 106.84207 * 0.37033 * 14 13 12 16 16 O 1.34306 * 125.78846 * 270.02423 * 12 11 10 17 17 C 1.34780 * 119.99743 * 84.98837 * 10 9 7 18 18 O 1.21359 * 119.99349 * 174.62201 * 17 10 9 19 19 C 1.49334 * 119.99945 * 354.62412 * 17 10 9 20 20 O 1.21389 * 120.00271 * 354.44070 * 19 17 10 21 21 N 1.34777 * 119.99716 * 174.43949 * 19 17 10 22 22 C 1.39899 * 119.99929 * 184.99580 * 21 19 17 23 23 C 1.39472 * 119.88997 * 35.11316 * 22 21 19 24 24 C 1.37605 * 120.60049 * 180.02562 * 23 22 21 25 25 C 1.39155 * 120.02663 * 359.95084 * 24 23 22 26 26 N 1.37852 * 133.32553 * 180.02562 * 25 24 23 27 27 H 0.96999 * 125.06815 * 0.02562 * 26 25 24 28 28 C 1.36809 * 109.86359 * 180.26530 * 26 25 24 29 29 C 1.34240 * 109.93984 * 359.55092 * 28 26 25 30 30 C 1.40652 * 119.55310 * 0.02562 * 25 24 23 31 31 C 1.38273 * 119.88840 * 215.08927 * 22 21 19 32 32 H 0.97000 * 120.00240 * 359.97438 * 1 2 3 33 33 H 1.08998 * 109.46611 * 59.99983 * 9 7 2 34 34 H 1.09003 * 109.47164 * 300.00338 * 9 7 2 35 35 H 1.09000 * 109.47169 * 34.29257 * 11 10 9 36 36 H 1.08995 * 109.46871 * 154.29006 * 11 10 9 37 37 H 1.08003 * 126.57186 * 0.02562 * 13 12 11 38 38 H 1.07997 * 126.58322 * 180.16601 * 14 13 12 39 39 H 1.07993 * 125.79330 * 179.75389 * 15 14 13 40 40 H 0.97002 * 119.99974 * 4.99665 * 21 19 17 41 41 H 1.07999 * 119.69951 * 359.97384 * 23 22 21 42 42 H 1.08001 * 119.98856 * 179.97438 * 24 23 22 43 43 H 1.08003 * 125.03178 * 179.73457 * 28 26 25 44 44 H 1.08001 * 126.49056 * 180.17079 * 29 28 26 45 45 H 1.08000 * 120.20791 * 0.02562 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0015 11 6 2.5938 -4.2420 -1.2625 12 6 1.5917 -5.3080 -1.6236 13 6 0.4787 -5.1256 -2.3567 14 6 -0.1609 -6.3829 -2.4503 15 6 0.5951 -7.2570 -1.7619 16 8 1.6554 -6.6003 -1.2634 17 6 2.7193 -4.0581 1.1641 18 8 3.4309 -5.0411 1.1748 19 6 2.4157 -3.3420 2.4388 20 8 1.7884 -2.3029 2.4168 21 7 2.8381 -3.8494 3.6138 22 6 2.4654 -3.2363 4.8149 23 6 1.2039 -2.6540 4.9358 24 6 0.8224 -2.0467 6.1102 25 6 1.6975 -2.0101 7.1915 26 7 1.6066 -1.4896 8.4647 27 1 0.8340 -1.0255 8.8232 28 6 2.7705 -1.7207 9.1456 29 6 3.6328 -2.3901 8.3643 30 6 2.9705 -2.5966 7.0738 31 6 3.3489 -3.2101 5.8782 32 1 -0.4850 0.8400 0.0004 33 1 0.6240 -2.5574 -0.8880 34 1 0.6246 -2.5563 0.8920 35 1 2.6227 -3.4888 -2.0498 36 1 3.5804 -4.6925 -1.1542 37 1 0.1400 -4.1971 -2.7923 38 1 -1.0817 -6.5994 -2.9714 39 1 0.3851 -8.3082 -1.6318 40 1 3.4004 -4.6396 3.6267 41 1 0.5205 -2.6793 4.0999 42 1 -0.1568 -1.5985 6.1929 43 1 2.9656 -1.4128 10.1623 44 1 4.6278 -2.7116 8.6344 45 1 4.3258 -3.6610 5.7843 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164196632.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:56 Heat of formation + Delta-G solvation = 36.259074 kcal Electronic energy + Delta-G solvation = -32495.435620 eV Core-core repulsion = 28060.498733 eV Total energy + Delta-G solvation = -4434.936887 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.136 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.23129 -41.16679 -40.21113 -38.36104 -36.61575 -35.51033 -33.60802 -32.74303 -32.47908 -31.77687 -30.41255 -28.70540 -28.47851 -27.31079 -26.15468 -23.90784 -22.86255 -22.66154 -21.38726 -21.26144 -20.66121 -20.12287 -19.28559 -17.91110 -17.42132 -17.18109 -16.82338 -16.44309 -16.11330 -15.65908 -15.51086 -14.99660 -14.73364 -14.47999 -14.33723 -14.25886 -13.91394 -13.66132 -13.38473 -13.20280 -12.98700 -12.61347 -12.54686 -12.50315 -12.45810 -12.38488 -12.18775 -11.74841 -11.53051 -11.33636 -10.98700 -10.85686 -10.81150 -10.50723 -10.00781 -9.77442 -9.75813 -9.61006 -9.47304 -8.78313 -8.37863 -8.17944 -8.00170 -7.82554 -7.39165 -6.02018 -4.03330 1.21229 1.59966 1.93674 2.22695 2.75390 2.78405 3.05594 3.18225 3.31514 3.32801 3.39161 3.44019 3.81964 4.12878 4.16425 4.47768 4.78131 4.86707 4.99036 5.02128 5.21714 5.30676 5.32736 5.35415 5.38842 5.52806 5.61110 5.63155 5.71823 5.92835 5.97292 6.07428 6.20674 6.23702 6.28557 6.36549 6.53224 6.55256 6.67809 6.78908 6.80082 6.87131 7.23428 7.32398 7.37867 7.47368 7.53228 7.62664 7.85939 8.02741 8.18196 8.35577 8.65388 8.95430 9.59203 11.07083 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.008425 B = 0.003158 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3322.602289 B = 8864.773675 C =11129.581315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.071 3.929 3 Si 0.892 3.108 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.234 3.766 10 N -0.559 5.559 11 C 0.194 3.806 12 C -0.021 4.021 13 C -0.196 4.196 14 C -0.217 4.217 15 C -0.050 4.050 16 O -0.168 6.168 17 C 0.510 3.490 18 O -0.550 6.550 19 C 0.487 3.513 20 O -0.427 6.427 21 N -0.661 5.661 22 C 0.139 3.861 23 C -0.089 4.089 24 C -0.111 4.111 25 C 0.080 3.920 26 N -0.599 5.599 27 H 0.413 0.587 28 C 0.047 3.953 29 C -0.208 4.208 30 C -0.092 4.092 31 C -0.106 4.106 32 H 0.261 0.739 33 H 0.035 0.965 34 H 0.061 0.939 35 H 0.118 0.882 36 H 0.095 0.905 37 H 0.151 0.849 38 H 0.144 0.856 39 H 0.197 0.803 40 H 0.414 0.586 41 H 0.141 0.859 42 H 0.123 0.877 43 H 0.167 0.833 44 H 0.144 0.856 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.767 -8.725 10.290 13.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.131 4.131 3 Si 0.721 3.279 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.115 3.885 10 N -0.290 5.290 11 C 0.070 3.930 12 C -0.072 4.072 13 C -0.216 4.216 14 C -0.236 4.236 15 C -0.118 4.118 16 O -0.063 6.063 17 C 0.293 3.707 18 O -0.430 6.430 19 C 0.268 3.732 20 O -0.293 6.293 21 N -0.311 5.311 22 C 0.044 3.956 23 C -0.110 4.110 24 C -0.132 4.132 25 C -0.027 4.027 26 N -0.202 5.202 27 H 0.249 0.751 28 C -0.079 4.079 29 C -0.233 4.233 30 C -0.097 4.097 31 C -0.128 4.128 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.135 0.865 36 H 0.113 0.887 37 H 0.168 0.832 38 H 0.162 0.838 39 H 0.214 0.786 40 H 0.251 0.749 41 H 0.158 0.842 42 H 0.141 0.859 43 H 0.184 0.816 44 H 0.161 0.839 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.621 -8.366 10.409 13.453 hybrid contribution 0.028 0.943 0.065 0.946 sum 1.650 -7.423 10.474 12.944 Atomic orbital electron populations 1.69910 1.05887 1.26775 1.50430 1.24759 0.94705 0.98739 0.94900 0.86590 0.79986 0.83541 0.77822 1.20796 1.21247 1.20010 1.21167 0.92914 0.90110 1.50816 0.92674 1.19909 0.87275 0.81749 0.99526 1.48309 1.43494 1.33696 1.03504 1.19848 0.94931 0.90687 0.87486 1.23060 1.00268 0.83073 1.00804 1.21713 0.95998 0.99324 1.04544 1.21809 1.02652 0.93423 1.05695 1.23976 0.88461 0.98537 1.00850 1.84090 1.41571 1.20444 1.60178 1.19905 0.81377 0.84041 0.85369 1.90676 1.39194 1.26203 1.86948 1.20271 0.82101 0.86151 0.84649 1.91039 1.33512 1.19248 1.85529 1.43185 1.53048 1.31484 1.03364 1.17379 0.93313 0.99206 0.85681 1.20893 0.95021 0.97904 0.97198 1.19863 0.99010 1.03373 0.90990 1.18274 0.96815 1.01140 0.86446 1.41770 1.15719 1.51677 1.11058 0.75052 1.21739 0.86183 1.01986 0.98026 1.21626 1.00608 1.08312 0.92787 1.18868 0.94024 1.02384 0.94410 1.20147 0.98400 1.02470 0.91751 0.92903 0.94733 0.92125 0.86456 0.88712 0.83150 0.83775 0.78615 0.74886 0.84152 0.85914 0.81599 0.83858 0.85665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.40 13.29 55.43 0.74 -24.66 16 2 C 0.07 1.96 5.46 -17.82 -0.10 1.86 16 3 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.51 -13.62 7.74 -34.44 -0.27 -13.89 16 8 H 0.06 1.49 7.81 -52.48 -0.41 1.08 16 9 C 0.23 5.67 4.77 -5.19 -0.02 5.65 16 10 N -0.56 -11.78 2.45 -176.99 -0.43 -12.21 16 11 C 0.19 3.46 5.92 -5.19 -0.03 3.43 16 12 C -0.02 -0.36 6.90 -35.63 -0.25 -0.61 16 13 C -0.20 -3.21 10.81 -39.71 -0.43 -3.63 16 14 C -0.22 -3.07 10.91 -39.70 -0.43 -3.51 16 15 C -0.05 -0.69 12.09 29.42 0.36 -0.33 16 16 O -0.17 -2.89 10.65 5.69 0.06 -2.83 16 17 C 0.51 10.67 7.68 -11.64 -0.09 10.58 16 18 O -0.55 -11.48 16.05 5.49 0.09 -11.39 16 19 C 0.49 9.99 7.42 -11.64 -0.09 9.91 16 20 O -0.43 -10.10 9.94 5.46 0.05 -10.05 16 21 N -0.66 -11.20 5.32 -10.28 -0.05 -11.25 16 22 C 0.14 2.30 6.24 -83.70 -0.52 1.77 16 23 C -0.09 -1.52 8.62 -39.35 -0.34 -1.86 16 24 C -0.11 -1.64 10.06 -39.47 -0.40 -2.04 16 25 C 0.08 1.10 7.27 -83.91 -0.61 0.49 16 26 N -0.60 -6.16 6.08 -10.61 -0.06 -6.22 16 27 H 0.41 2.98 8.96 -40.82 -0.37 2.61 16 28 C 0.05 0.44 11.81 -16.74 -0.20 0.24 16 29 C -0.21 -2.34 11.08 -37.66 -0.42 -2.76 16 30 C -0.09 -1.30 6.37 -105.14 -0.67 -1.97 16 31 C -0.11 -1.55 10.01 -39.06 -0.39 -1.94 16 32 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.03 0.86 8.03 -51.93 -0.42 0.45 16 34 H 0.06 1.61 5.92 -51.93 -0.31 1.31 16 35 H 0.12 1.93 8.10 -51.93 -0.42 1.51 16 36 H 0.09 1.62 7.37 -51.93 -0.38 1.24 16 37 H 0.15 2.38 8.06 -52.48 -0.42 1.95 16 38 H 0.14 1.66 8.06 -52.49 -0.42 1.23 16 39 H 0.20 1.85 8.06 -52.49 -0.42 1.43 16 40 H 0.41 6.08 8.30 -40.82 -0.34 5.75 16 41 H 0.14 2.63 6.51 -52.49 -0.34 2.29 16 42 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 43 H 0.17 0.88 8.06 -52.48 -0.42 0.46 16 44 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 45 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 391.53 15.07 5.90 5.90 Total: -1.00 -33.90 391.53 -8.71 -42.60 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -5.08 Total: 12.09 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -4.89 Total: 1.40 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.18 Total: -54.35 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: 0.20 Total: -24.26 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.90 -8.71 -42.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164196632.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.862 kcal (2) G-P(sol) polarization free energy of solvation -33.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds