Wall clock time and date at job start Tue Mar 31 2020 06:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31439 * 1 3 3 Si 1.86801 * 119.99656 * 2 1 4 4 H 1.48500 * 109.46960 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47567 * 300.00283 * 3 2 1 6 6 H 1.48501 * 109.46900 * 60.00814 * 3 2 1 7 7 C 1.38827 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00093 * 179.97438 * 7 2 1 9 9 N 1.37070 * 120.00308 * 359.97438 * 7 2 1 10 10 N 1.40420 * 126.31584 * 0.02926 * 9 7 2 11 11 C 1.28859 * 108.05707 * 179.97438 * 10 9 7 12 12 N 1.38259 * 108.75522 * 359.94669 * 11 10 9 13 13 C 1.33899 * 108.43676 * 0.10855 * 12 11 10 14 14 O 1.21732 * 126.30550 * 179.88892 * 13 12 11 15 15 C 1.47119 * 123.07151 * 180.17911 * 12 11 10 16 16 C 1.54007 * 107.76132 * 292.35077 * 15 12 11 17 17 N 1.45364 * 110.14592 * 78.23280 * 16 15 12 18 18 C 1.34769 * 117.82559 * 111.93170 * 17 16 15 19 19 O 1.21615 * 120.00120 * 5.31206 * 18 17 16 20 20 C 1.47379 * 120.00035 * 185.31172 * 18 17 16 21 21 C 1.39321 * 120.34463 * 54.69848 * 20 18 17 22 22 C 1.38271 * 120.19902 * 180.02562 * 21 20 18 23 23 C 1.38056 * 120.88563 * 359.97438 * 22 21 20 24 24 C 1.38981 * 120.26812 * 0.02562 * 23 22 21 25 25 N 1.37797 * 133.36968 * 179.97438 * 24 23 22 26 26 H 0.96996 * 125.07630 * 0.04240 * 25 24 23 27 27 C 1.36550 * 109.84754 * 179.80827 * 25 24 23 28 28 C 1.34553 * 109.90179 * 0.38590 * 27 25 24 29 29 C 1.40654 * 119.51879 * 359.97438 * 24 23 22 30 30 C 1.45492 * 124.34592 * 291.65363 * 17 16 15 31 31 C 1.51440 * 128.31353 * 179.97438 * 11 10 9 32 32 H 0.96997 * 120.00487 * 359.97438 * 1 2 3 33 33 H 1.08999 * 109.79172 * 52.02090 * 15 12 11 34 34 H 1.09000 * 109.78929 * 172.85322 * 15 12 11 35 35 H 1.08998 * 109.45270 * 318.02726 * 16 15 12 36 36 H 1.09001 * 109.45901 * 198.43898 * 16 15 12 37 37 H 1.08001 * 119.89638 * 0.02562 * 21 20 18 38 38 H 1.08001 * 119.55917 * 180.02562 * 22 21 20 39 39 H 1.08003 * 119.86437 * 180.02562 * 23 22 21 40 40 H 1.08006 * 125.05448 * 180.27606 * 27 25 24 41 41 H 1.07993 * 126.49748 * 179.89067 * 28 27 25 42 42 H 1.09003 * 109.35812 * 188.28143 * 30 17 16 43 43 H 1.09005 * 109.35600 * 307.86377 * 30 17 16 44 44 H 1.09003 * 109.82570 * 127.56013 * 31 11 10 45 45 H 1.08996 * 109.82964 * 6.62247 * 31 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.7083 1.3465 -0.0006 5 1 1.8895 2.3966 -1.2124 6 1 1.8896 2.3964 1.2126 7 6 2.0086 -1.2023 -0.0005 8 1 3.0886 -1.2022 -0.0010 9 7 1.3233 -2.3894 -0.0005 10 7 -0.0723 -2.5440 -0.0006 11 6 -0.3345 -3.8056 -0.0011 12 7 0.8569 -4.5072 -0.0026 13 6 1.8664 -3.6274 -0.0006 14 8 3.0543 -3.8935 0.0008 15 6 0.9232 -5.9769 -0.0074 16 6 0.3862 -6.4758 1.3470 17 7 -1.0666 -6.4288 1.3576 18 6 -1.7337 -7.5996 1.3835 19 8 -1.1227 -8.6452 1.4947 20 6 -3.2036 -7.6127 1.2771 21 6 -3.8373 -6.9878 0.2053 22 6 -5.2166 -7.0015 0.1087 23 6 -5.9877 -7.6307 1.0655 24 6 -5.3849 -8.2629 2.1464 25 7 -5.8759 -8.9556 3.2317 26 1 -6.8154 -9.1166 3.4117 27 6 -4.8422 -9.3860 4.0133 28 6 -3.6709 -8.9910 3.4819 29 6 -3.9829 -8.2576 2.2587 30 6 -1.8484 -5.2018 1.3480 31 6 -1.6888 -4.4832 -0.0009 32 1 -0.4851 0.8400 0.0004 33 1 0.3098 -6.3713 -0.8176 34 1 1.9565 -6.2993 -0.1354 35 1 0.7731 -5.8434 2.1461 36 1 0.7148 -7.5018 1.5123 37 1 -3.2494 -6.4911 -0.5525 38 1 -5.6970 -6.5141 -0.7268 39 1 -7.0638 -7.6316 0.9735 40 1 -4.9490 -9.9571 4.9238 41 1 -2.6865 -9.1843 3.8817 42 1 -2.8996 -5.4419 1.5073 43 1 -1.5039 -4.5476 2.1490 44 1 -1.7401 -5.2072 -0.8141 45 1 -2.4752 -3.7377 -0.1184 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169790117.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:56 Heat of formation + Delta-G solvation = 100.088365 kcal Electronic energy + Delta-G solvation = -33216.937463 eV Core-core repulsion = 28817.061173 eV Total energy + Delta-G solvation = -4399.876290 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.143 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.66495 -41.25418 -39.90631 -36.97918 -36.62658 -35.68672 -34.31167 -32.99286 -32.15454 -31.67414 -29.94084 -29.32231 -28.91949 -28.38034 -25.21698 -24.33267 -23.83543 -22.69499 -22.03081 -21.20353 -20.77883 -19.63250 -19.43302 -18.07514 -17.97912 -17.18354 -16.34815 -16.13122 -15.86768 -15.69538 -15.33375 -15.15856 -14.96936 -14.72638 -14.38104 -14.16972 -14.07035 -13.83017 -13.59638 -13.33297 -12.95417 -12.78892 -12.63945 -12.31949 -12.06517 -11.97861 -11.78282 -11.69847 -11.60366 -11.52049 -11.39132 -11.24327 -10.85623 -10.63711 -10.40800 -10.12002 -10.05052 -9.96667 -9.72873 -8.81064 -8.71471 -8.51363 -8.45066 -7.95796 -7.45224 -6.34099 -4.00184 0.58840 1.32021 2.42363 2.62999 2.82640 2.97667 3.09502 3.10459 3.23218 3.26087 3.34253 3.62203 4.00334 4.09362 4.26753 4.37273 4.51431 4.66719 4.87529 4.89132 5.02454 5.06691 5.08621 5.18647 5.23827 5.28048 5.30270 5.35727 5.43442 5.51555 5.65125 5.69035 5.80122 5.82596 5.85051 6.02149 6.06594 6.16333 6.21199 6.34913 6.38891 6.45225 6.63673 6.81453 7.13330 7.20284 7.28984 7.32275 7.62047 8.10202 8.11551 8.58499 9.00844 9.41820 9.82466 10.67309 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.016694 B = 0.002509 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.845736 B =11157.294051 C =12059.728818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.042 3.958 3 Si 0.931 3.069 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.306 4.306 8 H 0.118 0.882 9 N -0.256 5.256 10 N -0.187 5.187 11 C 0.141 3.859 12 N -0.553 5.553 13 C 0.578 3.422 14 O -0.608 6.608 15 C 0.124 3.876 16 C 0.096 3.904 17 N -0.597 5.597 18 C 0.558 3.442 19 O -0.533 6.533 20 C -0.079 4.079 21 C -0.110 4.110 22 C -0.102 4.102 23 C -0.112 4.112 24 C 0.090 3.910 25 N -0.596 5.596 26 H 0.416 0.584 27 C 0.053 3.947 28 C -0.196 4.196 29 C -0.068 4.068 30 C 0.104 3.896 31 C -0.035 4.035 32 H 0.267 0.733 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.111 0.889 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.123 0.877 40 H 0.172 0.828 41 H 0.148 0.852 42 H 0.101 0.899 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.916 -15.821 4.860 24.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.168 4.168 3 Si 0.756 3.244 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.435 4.435 8 H 0.136 0.864 9 N -0.062 5.062 10 N -0.013 5.013 11 C -0.132 4.132 12 N -0.283 5.283 13 C 0.281 3.719 14 O -0.490 6.490 15 C -0.001 4.001 16 C -0.028 4.028 17 N -0.329 5.329 18 C 0.346 3.654 19 O -0.410 6.410 20 C -0.082 4.082 21 C -0.130 4.130 22 C -0.121 4.121 23 C -0.132 4.132 24 C -0.017 4.017 25 N -0.200 5.200 26 H 0.253 0.747 27 C -0.073 4.073 28 C -0.221 4.221 29 C -0.073 4.073 30 C -0.020 4.020 31 C -0.076 4.076 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.121 0.879 35 H 0.097 0.903 36 H 0.129 0.871 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.141 0.859 40 H 0.189 0.811 41 H 0.166 0.834 42 H 0.119 0.881 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -17.359 -15.407 4.984 23.739 hybrid contribution 0.204 0.134 0.073 0.255 sum -17.154 -15.273 5.057 23.518 Atomic orbital electron populations 1.70174 1.05562 1.27039 1.41892 1.25406 0.95787 0.99465 0.96186 0.85800 0.79807 0.80733 0.78034 1.18924 1.20299 1.20296 1.19595 0.91492 0.79126 1.53292 0.86441 1.44759 1.00929 1.04701 1.55831 1.77500 0.95224 1.11129 1.17410 1.24069 0.89173 0.88964 1.10949 1.45976 1.07120 1.06679 1.68554 1.16350 0.84926 0.82043 0.88547 1.90842 1.12189 1.81265 1.64735 1.22104 1.03407 0.77311 0.97255 1.21962 0.78913 1.04119 0.97760 1.47424 1.06603 1.06195 1.72638 1.18483 0.87198 0.83834 0.75876 1.90775 1.69252 1.31746 1.49233 1.19206 0.92300 1.00415 0.96302 1.21190 0.94884 0.99244 0.97683 1.20737 0.93158 0.99514 0.98691 1.20150 0.99661 1.00159 0.93261 1.18143 0.92830 0.99522 0.91194 1.41717 1.08827 1.48518 1.20918 0.74711 1.21886 0.86566 1.01497 0.97361 1.21749 0.98159 1.05553 0.96641 1.18905 0.91504 1.00838 0.96090 1.21829 0.96751 0.85293 0.98099 1.20604 0.90862 0.98735 0.97419 0.92242 0.90155 0.87896 0.90312 0.87132 0.84893 0.84821 0.85938 0.81062 0.83446 0.88112 0.90139 0.89973 0.87300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.33 11.83 55.49 0.66 -21.67 16 2 C 0.04 1.13 5.50 -17.50 -0.10 1.03 16 3 Si 0.93 20.34 29.55 -169.99 -5.02 15.32 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.31 -8.80 10.12 -14.99 -0.15 -8.95 16 8 H 0.12 3.37 7.82 -52.49 -0.41 2.95 16 9 N -0.26 -7.21 3.71 -15.46 -0.06 -7.27 16 10 N -0.19 -4.76 10.36 33.25 0.34 -4.42 16 11 C 0.14 2.87 7.14 -153.37 -1.09 1.78 16 12 N -0.55 -11.69 2.79 -116.75 -0.33 -12.01 16 13 C 0.58 15.43 8.60 -87.32 -0.75 14.68 16 14 O -0.61 -17.68 17.69 5.16 0.09 -17.59 16 15 C 0.12 2.01 6.43 -3.18 -0.02 1.99 16 16 C 0.10 1.41 6.11 -4.13 -0.03 1.38 16 17 N -0.60 -8.09 2.71 -175.63 -0.48 -8.56 16 18 C 0.56 7.83 6.97 -12.54 -0.09 7.75 16 19 O -0.53 -8.95 16.20 5.26 0.09 -8.87 16 20 C -0.08 -0.95 4.44 -104.75 -0.46 -1.42 16 21 C -0.11 -1.08 7.70 -39.17 -0.30 -1.38 16 22 C -0.10 -0.82 9.99 -39.64 -0.40 -1.21 16 23 C -0.11 -0.88 10.05 -39.37 -0.40 -1.28 16 24 C 0.09 0.85 7.27 -84.00 -0.61 0.24 16 25 N -0.60 -4.12 6.06 -10.66 -0.06 -4.19 16 26 H 0.42 1.47 8.96 -40.82 -0.37 1.10 16 27 C 0.05 0.39 11.82 -16.75 -0.20 0.20 16 28 C -0.20 -2.10 10.95 -37.78 -0.41 -2.52 16 29 C -0.07 -0.80 6.17 -104.85 -0.65 -1.45 16 30 C 0.10 1.32 5.25 -4.24 -0.02 1.30 16 31 C -0.04 -0.49 5.37 -27.17 -0.15 -0.64 16 32 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 33 H 0.08 1.15 7.98 -51.93 -0.41 0.73 16 34 H 0.10 1.68 7.98 -51.93 -0.41 1.27 16 35 H 0.08 1.26 8.12 -51.93 -0.42 0.83 16 36 H 0.11 1.55 6.68 -51.93 -0.35 1.21 16 37 H 0.13 1.17 6.04 -52.49 -0.32 0.86 16 38 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.12 0.65 8.06 -52.48 -0.42 0.23 16 40 H 0.17 0.65 8.06 -52.48 -0.42 0.22 16 41 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 42 H 0.10 1.08 5.05 -51.93 -0.26 0.81 16 43 H 0.08 1.14 7.98 -51.93 -0.41 0.73 16 44 H 0.08 0.98 6.81 -51.93 -0.35 0.63 16 45 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 374.18 15.07 5.64 5.64 Total: -1.00 -38.12 374.18 -9.92 -48.04 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -4.97 Total: 4.09 kcal Atomic # 6 Polarization: 17.32 SS G_CDS: -5.82 Total: 11.49 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: 0.08 Total: -58.12 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: 0.18 Total: -26.46 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -38.12 -9.92 -48.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169790117.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.128 kcal (2) G-P(sol) polarization free energy of solvation -38.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds