Wall clock time and date at job start Tue Mar 31 2020 05:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31346 * 1 3 3 Si 1.86795 * 120.00358 * 2 1 4 4 H 1.48496 * 109.47375 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47143 * 300.00225 * 3 2 1 6 6 H 1.48508 * 109.46933 * 59.99778 * 3 2 1 7 7 C 1.39087 * 119.99653 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99672 * 172.40280 * 7 2 1 9 9 N 1.36817 * 120.00082 * 352.41091 * 7 2 1 10 10 C 1.34774 * 120.00067 * 121.69508 * 9 7 2 11 11 O 1.21604 * 120.00223 * 184.13057 * 10 9 7 12 12 C 1.47677 * 120.00064 * 4.13013 * 10 9 7 13 13 C 1.39736 * 120.03080 * 141.73280 * 12 10 9 14 14 C 1.37693 * 119.96678 * 180.02562 * 13 12 10 15 15 C 1.39469 * 120.03165 * 0.02562 * 14 13 12 16 16 C 1.48378 * 119.96693 * 179.97438 * 15 14 13 17 17 N 1.30773 * 126.41776 * 0.02562 * 16 15 14 18 18 O 1.21291 * 110.09574 * 179.68930 * 17 16 15 19 19 C 1.33678 * 110.02644 * 0.47737 * 18 17 16 20 20 C 1.50698 * 126.43446 * 179.79614 * 19 18 17 21 21 F 1.39897 * 109.47129 * 269.68478 * 20 19 18 22 22 F 1.39903 * 109.47305 * 29.68382 * 20 19 18 23 23 F 1.39897 * 109.47061 * 149.68860 * 20 19 18 24 24 N 1.30966 * 107.12740 * 359.53190 * 19 18 17 25 25 C 1.39471 * 120.06473 * 0.24246 * 15 14 13 26 26 C 1.37697 * 120.03091 * 359.49761 * 25 15 14 27 27 C 1.46495 * 119.99711 * 301.68933 * 9 7 2 28 28 C 1.52995 * 117.50107 * 1.76705 * 27 9 7 29 29 C 1.53000 * 117.50171 * 293.10708 * 27 9 7 30 30 H 0.97002 * 119.99860 * 5.03020 * 1 2 3 31 31 H 1.08002 * 120.01626 * 0.02562 * 13 12 10 32 32 H 1.07997 * 119.98298 * 179.97438 * 14 13 12 33 33 H 1.07996 * 119.98091 * 179.75020 * 25 15 14 34 34 H 1.08002 * 120.01663 * 180.23213 * 26 25 15 35 35 H 1.09001 * 115.54722 * 147.43951 * 27 9 7 36 36 H 1.09000 * 117.50036 * 359.97438 * 28 27 9 37 37 H 1.09004 * 117.49803 * 145.02381 * 28 27 9 38 38 H 1.09000 * 117.50349 * 214.98188 * 29 27 9 39 39 H 1.09001 * 117.49737 * 359.97438 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6176 0.0000 4 1 3.7075 1.3463 0.0006 5 1 1.8888 2.3964 -1.2125 6 1 1.8887 2.3964 1.2126 7 6 2.0088 -1.2046 0.0005 8 1 3.0817 -1.2087 -0.1231 9 7 1.3337 -2.3842 0.1575 10 6 1.4163 -3.3392 -0.7898 11 8 0.7576 -4.3562 -0.6871 12 6 2.3066 -3.1505 -1.9528 13 6 3.0253 -4.2333 -2.4663 14 6 3.8555 -4.0558 -3.5504 15 6 3.9797 -2.7959 -4.1356 16 6 4.8751 -2.6061 -5.3034 17 7 5.6013 -3.5266 -5.8825 18 8 6.2157 -3.0487 -6.8128 19 6 5.9456 -1.7437 -6.9176 20 6 6.5109 -0.7921 -7.9402 21 9 7.6868 -0.2192 -7.4442 22 9 6.7934 -1.4890 -9.1199 23 9 5.5774 0.2154 -8.2059 24 7 5.0930 -1.4489 -5.9682 25 6 3.2672 -1.7131 -3.6207 26 6 2.4322 -1.8887 -2.5400 27 6 0.5211 -2.6091 1.3555 28 6 0.4345 -1.4711 2.3744 29 6 1.2529 -2.7245 2.6942 30 1 -0.4850 0.8368 -0.0737 31 1 2.9297 -5.2089 -2.0130 32 1 4.4114 -4.8924 -3.9471 33 1 3.3675 -0.7372 -4.0724 34 1 1.8777 -1.0508 -2.1438 35 1 -0.3666 -3.2252 1.2125 36 1 0.9825 -0.5551 2.1537 37 1 -0.5100 -1.3387 2.9021 38 1 0.8465 -3.4162 3.4321 39 1 2.3390 -2.6334 2.6835 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170622968.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:50 Heat of formation + Delta-G solvation = -36.107376 kcal Electronic energy + Delta-G solvation = -32185.289469 eV Core-core repulsion = 27069.524702 eV Total energy + Delta-G solvation = -5115.764767 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 367.093 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.89426 -48.42026 -48.38211 -46.18330 -39.60292 -38.14424 -36.47115 -35.98915 -33.81414 -33.32129 -31.60089 -30.73801 -30.35447 -27.95467 -25.57079 -25.23862 -23.90240 -22.70373 -21.78312 -21.38728 -20.83965 -19.63996 -19.52790 -19.45678 -19.07656 -18.38946 -17.59651 -17.33286 -16.27542 -16.12830 -15.35940 -15.20164 -15.15077 -14.88687 -14.76152 -14.52514 -14.48155 -14.47200 -14.01453 -13.96695 -13.74164 -13.33751 -13.20347 -13.10791 -13.01524 -12.80006 -12.23773 -12.02672 -11.91925 -11.78292 -11.48868 -11.29747 -11.05989 -10.91901 -10.67228 -10.54473 -10.41973 -9.78733 -9.41273 -9.03275 -8.72996 -8.64111 -8.37364 -7.32640 -6.52309 -4.43789 0.18294 0.78148 1.00033 1.74751 2.13069 2.29852 2.64204 2.99005 3.11068 3.13361 3.36139 3.50813 3.61890 3.63697 3.91611 3.97504 4.23996 4.50236 4.69002 4.89793 5.06255 5.12688 5.21130 5.31383 5.67190 5.75839 5.85367 5.92671 6.07121 6.09440 6.15009 6.38107 6.42388 6.54817 6.70687 6.79446 6.95747 7.00276 7.21699 7.23634 7.27845 7.46721 7.95237 8.17632 8.84283 9.24289 9.73165 10.48632 Molecular weight = 367.09amu Principal moments of inertia in cm(-1) A = 0.014199 B = 0.002531 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.479904 B =11061.672201 C =12533.524146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.059 3.941 3 Si 0.900 3.100 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.358 4.358 8 H 0.086 0.914 9 N -0.404 5.404 10 C 0.525 3.475 11 O -0.591 6.591 12 C -0.057 4.057 13 C -0.087 4.087 14 C -0.094 4.094 15 C -0.043 4.043 16 C 0.242 3.758 17 N -0.353 5.353 18 O 0.122 5.878 19 C 0.077 3.923 20 C 0.590 3.410 21 F -0.148 7.148 22 F -0.151 7.151 23 F -0.139 7.139 24 N -0.405 5.405 25 C -0.090 4.090 26 C -0.061 4.061 27 C 0.106 3.894 28 C -0.143 4.143 29 C -0.216 4.216 30 H 0.273 0.727 31 H 0.133 0.867 32 H 0.127 0.873 33 H 0.133 0.867 34 H 0.168 0.832 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.194 0.496 -12.008 16.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.151 4.151 3 Si 0.725 3.275 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.486 4.486 8 H 0.103 0.897 9 N -0.121 5.121 10 C 0.314 3.686 11 O -0.476 6.476 12 C -0.061 4.061 13 C -0.106 4.106 14 C -0.114 4.114 15 C -0.045 4.045 16 C -0.027 4.027 17 N -0.051 5.051 18 O 0.056 5.944 19 C -0.148 4.148 20 C 0.533 3.467 21 F -0.129 7.129 22 F -0.132 7.132 23 F -0.120 7.120 24 N -0.139 5.139 25 C -0.110 4.110 26 C -0.079 4.079 27 C 0.001 3.999 28 C -0.181 4.181 29 C -0.255 4.255 30 H 0.083 0.917 31 H 0.151 0.849 32 H 0.145 0.855 33 H 0.151 0.849 34 H 0.185 0.815 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.440 -0.408 -11.384 15.451 hybrid contribution 0.611 1.200 -0.249 1.369 sum 11.051 0.792 -11.632 16.064 Atomic orbital electron populations 1.69925 1.06045 1.28189 1.43156 1.25630 0.95273 0.99599 0.94570 0.86279 0.80507 0.82106 0.78631 1.18737 1.19978 1.20109 1.19256 0.91989 0.82539 1.54790 0.89696 1.42567 1.41870 1.13743 1.13932 1.18380 0.83308 0.84476 0.82425 1.90651 1.47732 1.30633 1.78583 1.20287 0.96220 0.93647 0.95957 1.21092 0.95185 0.98959 0.95388 1.20855 0.99091 0.95303 0.96158 1.17378 0.98612 0.95795 0.92744 1.24218 0.97529 0.82739 0.98185 1.74940 1.09406 1.20767 1.00037 1.85404 1.50704 1.20604 1.37725 1.28223 0.99667 0.86877 1.00015 1.15886 0.76003 0.77456 0.77371 1.93343 1.47396 1.84853 1.87335 1.93328 1.93451 1.78723 1.47666 1.93351 1.64986 1.60105 1.93562 1.71978 1.11599 1.26315 1.04041 1.21187 0.96013 0.97796 0.96046 1.22113 0.95613 0.98167 0.92006 1.21246 0.95607 1.01344 0.81664 1.22953 1.00053 0.93990 1.01096 1.23355 0.99278 1.02267 1.00552 0.91677 0.84869 0.85477 0.84896 0.81483 0.87769 0.87406 0.90542 0.90247 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.21 11.78 55.50 0.65 -19.56 16 2 C 0.06 1.34 2.71 -17.44 -0.05 1.29 16 3 Si 0.90 17.73 29.56 -169.99 -5.03 12.70 16 4 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.28 -5.50 7.11 56.52 0.40 -5.09 16 7 C -0.36 -8.22 5.16 -15.01 -0.08 -8.30 16 8 H 0.09 1.95 7.53 -52.49 -0.40 1.56 16 9 N -0.40 -9.62 2.67 -108.86 -0.29 -9.91 16 10 C 0.53 12.52 7.33 -12.41 -0.09 12.43 16 11 O -0.59 -15.37 16.67 5.27 0.09 -15.29 16 12 C -0.06 -1.17 5.47 -104.92 -0.57 -1.74 16 13 C -0.09 -1.54 9.61 -39.22 -0.38 -1.91 16 14 C -0.09 -1.47 9.67 -39.32 -0.38 -1.85 16 15 C -0.04 -0.68 5.88 -104.80 -0.62 -1.30 16 16 C 0.24 3.55 7.79 -156.11 -1.22 2.34 16 17 N -0.35 -4.82 11.84 30.97 0.37 -4.46 16 18 O 0.12 1.41 11.29 18.01 0.20 1.61 16 19 C 0.08 0.85 7.68 -12.99 -0.10 0.75 16 20 C 0.59 5.02 3.57 36.00 0.13 5.15 16 21 F -0.15 -1.24 17.30 2.25 0.04 -1.20 16 22 F -0.15 -1.13 17.30 2.25 0.04 -1.09 16 23 F -0.14 -1.27 17.26 2.25 0.04 -1.23 16 24 N -0.41 -5.54 11.19 -9.88 -0.11 -5.65 16 25 C -0.09 -1.51 9.68 -39.32 -0.38 -1.89 16 26 C -0.06 -1.17 8.19 -39.22 -0.32 -1.49 16 27 C 0.11 2.41 5.61 -67.94 -0.38 2.03 16 28 C -0.14 -2.98 8.51 -26.70 -0.23 -3.20 16 29 C -0.22 -4.21 10.38 -26.70 -0.28 -4.49 16 30 H 0.27 6.24 8.31 -40.82 -0.34 5.90 16 31 H 0.13 2.23 8.04 -52.49 -0.42 1.81 16 32 H 0.13 1.72 7.86 -52.49 -0.41 1.31 16 33 H 0.13 2.02 7.86 -52.49 -0.41 1.61 16 34 H 0.17 3.49 5.39 -52.49 -0.28 3.21 16 35 H 0.10 2.46 7.78 -51.93 -0.40 2.06 16 36 H 0.11 2.41 5.57 -51.93 -0.29 2.12 16 37 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 39 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 LS Contribution 358.20 15.07 5.40 5.40 Total: -1.00 -26.32 358.20 -6.56 -32.88 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -3.02 Total: 7.99 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -4.94 Total: -2.20 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.62 Total: -39.58 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.29 Total: -13.67 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.12 Total: -3.53 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.03 Total: 12.70 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -26.32 -6.56 -32.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170622968.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.231 kcal (2) G-P(sol) polarization free energy of solvation -26.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds