Wall clock time and date at job start Tue Mar 31 2020 04:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00124 * 2 1 4 4 H 1.48503 * 109.46620 * 269.99626 * 3 2 1 5 5 H 1.48499 * 109.46859 * 29.99057 * 3 2 1 6 6 H 1.48499 * 109.47403 * 149.99625 * 3 2 1 7 7 C 1.37878 * 119.99872 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99778 * 184.04032 * 7 2 1 9 9 C 1.50692 * 120.00258 * 4.03650 * 7 2 1 10 10 H 1.09004 * 109.47136 * 25.30421 * 9 7 2 11 11 N 1.46503 * 109.47035 * 145.29990 * 9 7 2 12 12 C 1.39672 * 120.00030 * 274.99708 * 11 9 7 13 13 C 1.38936 * 120.07240 * 6.47419 * 12 11 9 14 14 C 1.38081 * 119.92227 * 179.71619 * 13 12 11 15 15 C 1.38311 * 120.07646 * 0.55385 * 14 13 12 16 16 C 1.50699 * 119.92808 * 179.74670 * 15 14 13 17 17 F 1.39906 * 109.46937 * 269.97700 * 16 15 14 18 18 F 1.39894 * 109.47131 * 29.97413 * 16 15 14 19 19 F 1.39897 * 109.47357 * 149.97529 * 16 15 14 20 20 C 1.38268 * 120.14845 * 359.71965 * 15 14 13 21 21 C 1.38121 * 120.07207 * 0.02562 * 20 15 14 22 22 N 1.48006 * 120.03839 * 179.97438 * 21 20 15 23 23 O 1.21810 * 119.99538 * 37.27400 * 22 21 20 24 24 O 1.21795 * 120.00593 * 217.27773 * 22 21 20 25 25 C 1.50706 * 109.47495 * 265.30075 * 9 7 2 26 26 C 1.38227 * 119.99749 * 285.51358 * 25 9 7 27 27 C 1.38234 * 119.99832 * 179.80384 * 26 25 9 28 28 C 1.38232 * 119.99939 * 0.40654 * 27 26 25 29 29 C 1.38235 * 120.00247 * 359.85014 * 28 27 26 30 30 C 1.38233 * 119.99719 * 359.95605 * 29 28 27 31 31 H 0.97000 * 119.99951 * 0.02562 * 1 2 3 32 32 H 0.96999 * 119.99954 * 95.01092 * 11 9 7 33 33 H 1.07997 * 120.04009 * 359.97438 * 13 12 11 34 34 H 1.07996 * 119.96594 * 180.25319 * 14 13 12 35 35 H 1.08001 * 119.96092 * 180.02562 * 20 15 14 36 36 H 1.08003 * 120.00314 * 359.97438 * 26 25 9 37 37 H 1.08003 * 120.00085 * 180.22927 * 27 26 25 38 38 H 1.08002 * 119.99962 * 179.83048 * 28 27 26 39 39 H 1.07998 * 120.00694 * 179.97438 * 29 28 27 40 40 H 1.07998 * 120.00495 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4465 2.6527 0.6998 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0826 -1.1952 0.0664 9 6 1.2539 -2.4976 -0.0907 10 1 0.2961 -2.3315 -0.5838 11 7 2.0408 -3.4611 -0.8645 12 6 1.9587 -3.4704 -2.2588 13 6 1.2384 -2.4836 -2.9203 14 6 1.1641 -2.4924 -4.2991 15 6 1.7961 -3.4886 -5.0210 16 6 1.7081 -3.4983 -6.5253 17 9 0.5918 -4.2424 -6.9224 18 9 1.5842 -2.1859 -6.9936 19 9 2.8664 -4.0756 -7.0566 20 6 2.5091 -4.4755 -4.3654 21 6 2.5918 -4.4696 -2.9867 22 7 3.3547 -5.5266 -2.2857 23 8 4.3883 -5.9535 -2.7686 24 8 2.9490 -5.9696 -1.2262 25 6 1.0180 -3.0396 1.2955 26 6 2.0614 -3.6074 2.0024 27 6 1.8459 -4.1009 3.2755 28 6 0.5852 -4.0343 3.8384 29 6 -0.4595 -3.4714 3.1294 30 6 -0.2431 -2.9742 1.8579 31 1 -0.4850 0.8401 -0.0004 32 1 2.6188 -4.0927 -0.4085 33 1 0.7407 -1.7081 -2.3571 34 1 0.6078 -1.7234 -4.8143 35 1 3.0018 -5.2517 -4.9321 36 1 3.0456 -3.6629 1.5611 37 1 2.6620 -4.5412 3.8293 38 1 0.4162 -4.4224 4.8320 39 1 -1.4446 -3.4197 3.5690 40 1 -1.0593 -2.5347 1.3037 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170658133.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:59 Heat of formation + Delta-G solvation = -104.101405 kcal Electronic energy + Delta-G solvation = -32984.160735 eV Core-core repulsion = 27930.873437 eV Total energy + Delta-G solvation = -5053.287298 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 366.098 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.14088 -47.66242 -47.59717 -41.95950 -39.59490 -38.61755 -36.46702 -35.78273 -33.28336 -31.87323 -31.40209 -30.29486 -29.60510 -27.06899 -26.38657 -25.21125 -23.61414 -22.50030 -22.08195 -21.50761 -20.27529 -19.37494 -18.66286 -18.47800 -18.25293 -17.59712 -17.17655 -17.05803 -16.84838 -16.29158 -15.50908 -14.95715 -14.60764 -14.51285 -14.41284 -14.18370 -14.08454 -13.97218 -13.77300 -13.75520 -13.66484 -13.59350 -13.24073 -12.81127 -12.66915 -12.31540 -12.20747 -11.88333 -11.60715 -11.34388 -11.30246 -11.21849 -10.89768 -10.85957 -10.73465 -10.59876 -10.53552 -10.07874 -9.76981 -9.43683 -8.97655 -8.29876 -8.04782 -7.54952 -6.51355 -4.63694 0.32643 1.09100 1.44539 1.68483 2.00895 2.04269 2.70203 3.03946 3.13069 3.15428 3.37981 3.56337 3.79192 4.05546 4.05860 4.44594 4.48191 4.55182 4.80835 4.83886 5.03678 5.19051 5.44731 5.47378 5.51764 5.61957 5.73506 5.83900 6.01879 6.11930 6.13344 6.22956 6.43673 6.52812 6.61643 6.67481 6.75695 7.05606 7.08634 7.20951 7.36932 7.51918 7.57768 7.68996 7.86485 7.94641 8.45236 9.04139 10.49845 Molecular weight = 366.10amu Principal moments of inertia in cm(-1) A = 0.009181 B = 0.003713 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3048.988714 B = 7539.646952 C = 9318.726129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.077 3.923 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.529 4.529 8 H 0.065 0.935 9 C 0.279 3.721 10 H 0.087 0.913 11 N -0.683 5.683 12 C 0.323 3.677 13 C -0.172 4.172 14 C 0.005 3.995 15 C -0.263 4.263 16 C 0.521 3.479 17 F -0.180 7.180 18 F -0.177 7.177 19 F -0.180 7.180 20 C 0.034 3.966 21 C -0.147 4.147 22 N 0.046 4.954 23 O -0.168 6.168 24 O -0.179 6.179 25 C -0.043 4.043 26 C -0.120 4.120 27 C -0.124 4.124 28 C -0.144 4.144 29 C -0.125 4.125 30 C -0.101 4.101 31 H 0.272 0.728 32 H 0.399 0.601 33 H 0.173 0.827 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.472 -4.944 -5.493 7.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.129 4.129 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.567 4.567 8 H 0.083 0.917 9 C 0.179 3.821 10 H 0.105 0.895 11 N -0.302 5.302 12 C 0.202 3.798 13 C -0.194 4.194 14 C -0.015 4.015 15 C -0.268 4.268 16 C 0.467 3.533 17 F -0.161 7.161 18 F -0.158 7.158 19 F -0.161 7.161 20 C 0.015 3.985 21 C -0.237 4.237 22 N 0.561 4.439 23 O -0.384 6.384 24 O -0.389 6.389 25 C -0.045 4.045 26 C -0.138 4.138 27 C -0.142 4.142 28 C -0.162 4.162 29 C -0.143 4.143 30 C -0.120 4.120 31 H 0.082 0.918 32 H 0.238 0.762 33 H 0.191 0.809 34 H 0.162 0.838 35 H 0.165 0.835 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.129 -4.191 -5.573 7.064 hybrid contribution 0.991 0.509 0.289 1.151 sum -0.138 -3.682 -5.284 6.442 Atomic orbital electron populations 1.69857 1.05907 1.28146 1.47024 1.24952 0.95010 0.99577 0.93390 0.86437 0.80007 0.82248 0.78653 1.20015 1.20747 1.19614 1.21241 0.93752 0.88973 1.52707 0.91710 1.18270 0.93417 0.85378 0.85052 0.89540 1.46693 1.44805 1.36932 1.01759 1.17698 0.87511 0.89149 0.85487 1.21130 1.04262 1.00432 0.93568 1.20942 0.92427 0.94400 0.93756 1.19296 1.13303 1.03351 0.90871 1.18001 0.73558 0.73512 0.88216 1.93219 1.53416 1.77102 1.92385 1.93182 1.95694 1.36673 1.90268 1.93181 1.49854 1.84752 1.88361 1.20098 0.91714 0.96013 0.90702 1.20155 1.14312 0.96861 0.92407 1.43370 0.99974 1.00131 1.00430 1.94505 1.11810 1.62682 1.69368 1.94494 1.72820 1.60935 1.10618 1.20366 0.92616 0.93297 0.98200 1.20822 0.98466 0.99700 0.94842 1.20956 0.96761 1.00862 0.95626 1.20905 0.93504 1.02261 0.99543 1.21029 0.98436 0.99665 0.95186 1.20988 0.96950 0.98627 0.95387 0.91816 0.76236 0.80940 0.83778 0.83493 0.87375 0.87091 0.87243 0.87040 0.85821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -20.36 12.83 55.43 0.71 -19.65 16 2 C 0.08 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 18.72 29.54 -169.99 -5.02 13.70 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.53 -12.01 8.01 -34.44 -0.28 -12.29 16 8 H 0.06 1.54 7.82 -52.48 -0.41 1.13 16 9 C 0.28 5.72 1.93 -70.23 -0.14 5.59 16 10 H 0.09 1.88 5.82 -51.93 -0.30 1.58 16 11 N -0.68 -12.85 4.95 -54.42 -0.27 -13.12 16 12 C 0.32 5.68 6.58 -83.79 -0.55 5.13 16 13 C -0.17 -2.82 9.04 -39.38 -0.36 -3.17 16 14 C 0.00 0.07 9.39 -39.61 -0.37 -0.30 16 15 C -0.26 -3.58 5.46 -104.58 -0.57 -4.15 16 16 C 0.52 6.56 3.36 36.01 0.12 6.68 16 17 F -0.18 -2.28 17.30 2.25 0.04 -2.24 16 18 F -0.18 -2.22 16.46 2.25 0.04 -2.18 16 19 F -0.18 -2.27 16.46 2.25 0.04 -2.24 16 20 C 0.03 0.50 9.01 -39.61 -0.36 0.14 16 21 C -0.15 -2.45 6.51 -79.75 -0.52 -2.97 16 22 N 0.05 0.81 4.29 34.06 0.15 0.96 16 23 O -0.17 -2.96 18.94 -29.46 -0.56 -3.52 16 24 O -0.18 -3.32 16.75 -29.46 -0.49 -3.81 16 25 C -0.04 -0.87 4.93 -104.62 -0.52 -1.38 16 26 C -0.12 -2.23 8.94 -39.59 -0.35 -2.58 16 27 C -0.12 -2.05 10.05 -39.59 -0.40 -2.44 16 28 C -0.14 -2.27 10.05 -39.58 -0.40 -2.67 16 29 C -0.13 -2.09 10.05 -39.58 -0.40 -2.48 16 30 C -0.10 -1.92 9.67 -39.58 -0.38 -2.31 16 31 H 0.27 6.13 8.31 -40.82 -0.34 5.79 16 32 H 0.40 7.44 4.83 -40.82 -0.20 7.24 16 33 H 0.17 3.14 6.15 -52.49 -0.32 2.82 16 34 H 0.14 1.66 7.60 -52.49 -0.40 1.27 16 35 H 0.15 1.87 7.55 -52.49 -0.40 1.48 16 36 H 0.11 1.95 7.27 -52.48 -0.38 1.57 16 37 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 38 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 39 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.12 2.39 8.00 -52.49 -0.42 1.97 16 LS Contribution 364.77 15.07 5.50 5.50 Total: -1.00 -23.53 364.77 -8.67 -32.20 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -3.23 Total: 11.95 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -5.56 Total: -17.54 kcal Atomic # 7 Polarization: -32.40 SS G_CDS: 0.59 Total: -31.81 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -1.05 Total: -7.33 kcal Atomic # 9 Polarization: -6.77 SS G_CDS: 0.11 Total: -6.66 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.70 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -23.53 -8.67 -32.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170658133.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.904 kcal (2) G-P(sol) polarization free energy of solvation -23.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds