Wall clock time and date at job start Tue Mar 31 2020 04:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00292 * 2 1 4 4 H 1.48500 * 109.47383 * 239.99865 * 3 2 1 5 5 H 1.48508 * 109.47048 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47296 * 119.99903 * 3 2 1 7 7 C 1.37879 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00322 * 185.02371 * 7 2 1 9 9 C 1.50700 * 119.99856 * 5.01931 * 7 2 1 10 10 H 1.09008 * 109.47192 * 334.95670 * 9 7 2 11 11 N 1.46505 * 109.47219 * 214.95887 * 9 7 2 12 12 C 1.39663 * 120.00033 * 84.99967 * 11 9 7 13 13 C 1.38939 * 120.07672 * 354.08757 * 12 11 9 14 14 C 1.38079 * 119.92457 * 180.02562 * 13 12 11 15 15 C 1.38307 * 120.07986 * 0.02562 * 14 13 12 16 16 C 1.50695 * 119.93130 * 180.02562 * 15 14 13 17 17 F 1.39903 * 109.46734 * 359.97438 * 16 15 14 18 18 F 1.39899 * 109.47494 * 119.99680 * 16 15 14 19 19 F 1.39905 * 109.46964 * 239.99981 * 16 15 14 20 20 C 1.38267 * 120.14587 * 359.97438 * 15 14 13 21 21 C 1.38129 * 120.07725 * 359.72770 * 20 15 14 22 22 N 1.47999 * 120.04134 * 180.27591 * 21 20 15 23 23 O 1.21800 * 120.00061 * 6.18406 * 22 21 20 24 24 O 1.21806 * 120.00030 * 186.18656 * 22 21 20 25 25 C 1.50696 * 109.46938 * 94.95739 * 9 7 2 26 26 C 1.38237 * 119.99972 * 254.57077 * 25 9 7 27 27 C 1.38242 * 119.99976 * 179.97438 * 26 25 9 28 28 C 1.38236 * 119.99818 * 359.97438 * 27 26 25 29 29 C 1.38230 * 120.00028 * 359.97438 * 28 27 26 30 30 C 1.38232 * 120.00311 * 359.97153 * 29 28 27 31 31 H 0.97008 * 119.99649 * 0.02562 * 1 2 3 32 32 H 0.96999 * 119.99832 * 265.00033 * 11 9 7 33 33 H 1.08001 * 120.03458 * 0.02562 * 13 12 11 34 34 H 1.08000 * 119.96553 * 180.02562 * 14 13 12 35 35 H 1.08003 * 119.96321 * 179.97438 * 20 15 14 36 36 H 1.07993 * 120.00287 * 0.25970 * 26 25 9 37 37 H 1.07995 * 119.99632 * 179.97438 * 27 26 25 38 38 H 1.08003 * 119.99535 * 179.97438 * 28 27 26 39 39 H 1.08003 * 119.99855 * 179.97438 * 29 28 27 40 40 H 1.07999 * 120.00290 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0813 -1.1960 0.0814 9 6 1.2553 -2.4966 -0.1153 10 1 0.2369 -2.3634 0.2499 11 7 1.9310 -3.5208 0.6852 12 6 1.6543 -3.6362 2.0492 13 6 0.8338 -2.7054 2.6744 14 6 0.5628 -2.8222 4.0233 15 6 1.1073 -3.8638 4.7522 16 6 0.8088 -3.9884 6.2240 17 9 -0.0328 -2.9430 6.6192 18 9 0.1790 -5.2131 6.4702 19 9 2.0035 -3.9242 6.9492 20 6 1.9242 -4.7919 4.1331 21 6 2.1946 -4.6846 2.7828 22 7 3.0642 -5.6819 2.1198 23 8 3.4502 -6.6589 2.7362 24 8 3.3938 -5.5256 0.9576 25 6 1.2190 -2.9297 -1.5582 26 6 0.0509 -2.8075 -2.2873 27 6 0.0177 -3.2043 -3.6112 28 6 1.1528 -3.7228 -4.2060 29 6 2.3211 -3.8439 -3.4772 30 6 2.3546 -3.4461 -2.1537 31 1 -0.4850 0.8401 -0.0004 32 1 2.5706 -4.1188 0.2677 33 1 0.4086 -1.8915 2.1060 34 1 -0.0752 -2.0993 4.5099 35 1 2.3483 -5.6039 4.7052 36 1 -0.8345 -2.3978 -1.8241 37 1 -0.8950 -3.1093 -4.1806 38 1 1.1267 -4.0331 -5.2401 39 1 3.2078 -4.2494 -3.9418 40 1 3.2673 -3.5412 -1.5842 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170658135.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:02 Heat of formation + Delta-G solvation = -99.524742 kcal Electronic energy + Delta-G solvation = -33013.588543 eV Core-core repulsion = 27960.499704 eV Total energy + Delta-G solvation = -5053.088839 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 366.098 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.11909 -47.64458 -47.57278 -41.96160 -39.55630 -38.62903 -36.61455 -35.66751 -33.24126 -31.83970 -31.38719 -30.31644 -29.59738 -27.03775 -26.36499 -25.17018 -23.61728 -22.49365 -22.11565 -21.56266 -20.25051 -19.32186 -18.64250 -18.44587 -18.12801 -17.36496 -17.24952 -17.09462 -16.96250 -16.32380 -15.58327 -14.91560 -14.58492 -14.50545 -14.37499 -14.22136 -14.02949 -13.99225 -13.77463 -13.74837 -13.62255 -13.48419 -13.20475 -12.81804 -12.64947 -12.31689 -12.27349 -11.89137 -11.54213 -11.35646 -11.22298 -11.17657 -10.95626 -10.78814 -10.73164 -10.60474 -10.53473 -9.99428 -9.78138 -9.43416 -8.95115 -8.32372 -8.07908 -7.51623 -6.50049 -4.61288 0.23595 1.13569 1.63515 1.71843 1.98597 2.01124 2.72328 3.07530 3.13153 3.16304 3.43461 3.63356 3.81673 4.07558 4.07828 4.45928 4.47108 4.58852 4.82366 4.87815 5.03384 5.20543 5.44379 5.45889 5.53008 5.61893 5.77422 5.85091 6.06991 6.12198 6.16695 6.20379 6.45296 6.54918 6.63019 6.72035 6.76599 7.04728 7.06229 7.21859 7.38754 7.53277 7.57653 7.68739 7.88104 8.16488 8.48034 9.05932 10.51239 Molecular weight = 366.10amu Principal moments of inertia in cm(-1) A = 0.009299 B = 0.003688 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3010.448671 B = 7589.700623 C = 9364.906684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.078 3.922 3 Si 0.900 3.100 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.065 0.935 9 C 0.271 3.729 10 H 0.089 0.911 11 N -0.672 5.672 12 C 0.324 3.676 13 C -0.174 4.174 14 C 0.004 3.996 15 C -0.266 4.266 16 C 0.522 3.478 17 F -0.177 7.177 18 F -0.180 7.180 19 F -0.180 7.180 20 C 0.040 3.960 21 C -0.153 4.153 22 N 0.062 4.938 23 O -0.178 6.178 24 O -0.206 6.206 25 C -0.047 4.047 26 C -0.106 4.106 27 C -0.125 4.125 28 C -0.144 4.144 29 C -0.124 4.124 30 C -0.119 4.119 31 H 0.273 0.727 32 H 0.410 0.590 33 H 0.177 0.823 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.123 0.877 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.251 -5.241 4.599 7.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.128 4.128 3 Si 0.727 3.273 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.084 0.916 9 C 0.170 3.830 10 H 0.107 0.893 11 N -0.298 5.298 12 C 0.199 3.801 13 C -0.196 4.196 14 C -0.016 4.016 15 C -0.271 4.271 16 C 0.467 3.533 17 F -0.158 7.158 18 F -0.161 7.161 19 F -0.161 7.161 20 C 0.021 3.979 21 C -0.246 4.246 22 N 0.567 4.433 23 O -0.390 6.390 24 O -0.403 6.403 25 C -0.048 4.048 26 C -0.125 4.125 27 C -0.144 4.144 28 C -0.162 4.162 29 C -0.142 4.142 30 C -0.137 4.137 31 H 0.083 0.917 32 H 0.258 0.742 33 H 0.194 0.806 34 H 0.164 0.836 35 H 0.168 0.832 36 H 0.141 0.859 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.826 -4.548 4.575 6.705 hybrid contribution 0.987 0.572 -0.229 1.164 sum -0.839 -3.976 4.347 5.950 Atomic orbital electron populations 1.69807 1.05921 1.28269 1.47354 1.24944 0.95017 0.99599 0.93233 0.86489 0.79742 0.81875 0.79189 1.19789 1.20794 1.19818 1.21192 0.93986 0.89006 1.52312 0.91639 1.18341 0.96234 0.84814 0.83567 0.89301 1.47403 1.42538 1.35413 1.04486 1.17828 0.88154 0.88348 0.85725 1.21243 1.02458 1.01378 0.94541 1.21034 0.93344 0.93799 0.93463 1.19320 1.11780 1.03749 0.92214 1.17996 0.74106 0.73548 0.87613 1.93156 1.72127 1.58345 1.92219 1.93208 1.82782 1.44712 1.95421 1.93211 1.46615 1.96018 1.80303 1.20140 0.90693 0.95922 0.91175 1.20208 1.12308 0.97774 0.94305 1.43294 0.98898 1.00774 1.00302 1.94480 1.58349 1.20428 1.65766 1.94193 1.62078 1.82203 1.01855 1.20423 0.92636 0.93728 0.98038 1.21007 0.98121 0.99243 0.94080 1.21030 0.97919 1.00121 0.95286 1.20920 0.93657 1.02407 0.99241 1.20989 0.97632 1.00986 0.94614 1.20915 0.98105 0.99782 0.94913 0.91743 0.74243 0.80609 0.83554 0.83175 0.85889 0.87023 0.87211 0.86986 0.86802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -20.39 12.77 55.43 0.71 -19.68 16 2 C 0.08 1.80 5.45 -17.82 -0.10 1.70 16 3 Si 0.90 18.79 29.54 -169.99 -5.02 13.77 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.53 -12.00 8.04 -34.44 -0.28 -12.28 16 8 H 0.07 1.55 7.82 -52.49 -0.41 1.14 16 9 C 0.27 5.59 2.00 -70.23 -0.14 5.45 16 10 H 0.09 1.94 5.67 -51.92 -0.29 1.64 16 11 N -0.67 -12.80 5.06 -54.42 -0.28 -13.08 16 12 C 0.32 5.77 6.61 -83.79 -0.55 5.22 16 13 C -0.17 -2.90 9.05 -39.38 -0.36 -3.26 16 14 C 0.00 0.06 9.42 -39.61 -0.37 -0.31 16 15 C -0.27 -3.64 5.37 -104.59 -0.56 -4.20 16 16 C 0.52 6.60 3.31 36.00 0.12 6.72 16 17 F -0.18 -2.20 15.97 2.25 0.04 -2.16 16 18 F -0.18 -2.28 17.23 2.25 0.04 -2.24 16 19 F -0.18 -2.33 17.24 2.25 0.04 -2.29 16 20 C 0.04 0.59 9.10 -39.61 -0.36 0.23 16 21 C -0.15 -2.58 6.86 -79.75 -0.55 -3.13 16 22 N 0.06 1.11 4.45 34.06 0.15 1.26 16 23 O -0.18 -3.13 18.47 -29.46 -0.54 -3.67 16 24 O -0.21 -3.86 15.71 -29.46 -0.46 -4.33 16 25 C -0.05 -0.93 4.93 -104.62 -0.52 -1.45 16 26 C -0.11 -2.00 9.67 -39.58 -0.38 -2.38 16 27 C -0.13 -2.07 10.05 -39.58 -0.40 -2.47 16 28 C -0.14 -2.25 10.05 -39.58 -0.40 -2.65 16 29 C -0.12 -2.03 10.05 -39.59 -0.40 -2.43 16 30 C -0.12 -2.20 8.94 -39.58 -0.35 -2.55 16 31 H 0.27 6.15 8.31 -40.82 -0.34 5.81 16 32 H 0.41 7.74 3.65 -41.18 -0.15 7.59 16 33 H 0.18 3.27 6.16 -52.49 -0.32 2.95 16 34 H 0.15 1.73 7.15 -52.49 -0.38 1.36 16 35 H 0.15 1.92 7.62 -52.48 -0.40 1.52 16 36 H 0.12 2.35 8.00 -52.49 -0.42 1.93 16 37 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 39 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 40 H 0.11 2.06 7.27 -52.49 -0.38 1.68 16 LS Contribution 362.47 15.07 5.46 5.46 Total: -1.00 -23.50 362.47 -8.62 -32.12 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -3.16 Total: 12.65 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -5.59 Total: -17.82 kcal Atomic # 7 Polarization: -32.08 SS G_CDS: 0.58 Total: -31.49 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -1.01 Total: -8.00 kcal Atomic # 9 Polarization: -6.81 SS G_CDS: 0.11 Total: -6.69 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.02 Total: 13.77 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -23.50 -8.62 -32.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170658135.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.400 kcal (2) G-P(sol) polarization free energy of solvation -23.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds