Wall clock time and date at job start Tue Mar 31 2020 05:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35948 * 116.99830 * 2 1 4 4 C 1.38044 * 120.00054 * 359.97329 * 3 2 1 5 5 C 1.40046 * 119.83489 * 180.02562 * 4 3 2 6 6 C 1.46856 * 120.07935 * 180.02562 * 5 4 3 7 7 C 1.35258 * 119.99950 * 224.47717 * 6 5 4 8 8 C 1.50778 * 120.52847 * 195.48401 * 7 6 5 9 9 C 1.52302 * 110.46213 * 106.80351 * 8 7 6 10 10 O 1.42079 * 111.79152 * 44.99554 * 9 8 7 11 11 C 1.35528 * 117.95336 * 45.20088 * 10 9 8 12 12 C 1.38501 * 120.88793 * 103.77265 * 11 10 9 13 13 C 1.38154 * 119.96307 * 179.97438 * 12 11 10 14 14 C 1.38570 * 120.54167 * 0.06331 * 13 12 11 15 15 C 1.37916 * 120.29634 * 359.97160 * 14 13 12 16 16 C 1.39350 * 119.67681 * 0.02562 * 15 14 13 17 17 C 1.42659 * 120.52449 * 15.20057 * 7 6 5 18 18 O 1.21792 * 120.87659 * 3.50882 * 17 7 6 19 19 C 1.40099 * 119.83454 * 0.02562 * 5 4 3 20 20 C 1.37605 * 119.99592 * 359.97438 * 19 5 4 21 21 C 1.39094 * 120.16825 * 0.02562 * 20 19 5 22 22 O 1.35584 * 119.91797 * 180.02562 * 21 20 19 23 23 C 1.34739 * 116.99951 * 5.60983 * 22 21 20 24 24 H 1.07992 * 120.00416 * 4.44520 * 23 22 21 25 25 C 1.38746 * 119.99982 * 184.44348 * 23 22 21 26 26 N 1.31494 * 119.99715 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00068 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.46659 * 90.00239 * 27 25 23 29 29 H 1.48496 * 109.46958 * 210.00084 * 27 25 23 30 30 H 1.48493 * 109.47186 * 330.00414 * 27 25 23 31 31 H 1.08998 * 109.47511 * 300.00337 * 1 2 3 32 32 H 1.08996 * 109.47284 * 60.00201 * 1 2 3 33 33 H 1.09002 * 109.47241 * 180.02562 * 1 2 3 34 34 H 1.07998 * 120.08156 * 0.04937 * 4 3 2 35 35 H 1.07995 * 119.99875 * 44.48058 * 6 5 4 36 36 H 1.08999 * 109.30380 * 227.10639 * 8 7 6 37 37 H 1.09006 * 109.30216 * 346.69913 * 8 7 6 38 38 H 1.09004 * 109.01525 * 165.59651 * 9 8 7 39 39 H 1.09001 * 109.01535 * 284.39683 * 9 8 7 40 40 H 1.07999 * 120.01886 * 359.97438 * 12 11 10 41 41 H 1.07997 * 119.73601 * 180.02562 * 13 12 11 42 42 H 1.08001 * 119.85272 * 179.97438 * 14 13 12 43 43 H 1.08005 * 120.16674 * 180.02562 * 15 14 13 44 44 H 1.08001 * 119.99890 * 180.02562 * 19 5 4 45 45 H 1.08001 * 119.91590 * 180.27734 * 20 19 5 46 46 H 0.97002 * 119.99786 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2943 2.3690 -0.0006 5 6 1.9337 3.6150 -0.0011 6 6 1.1391 4.8501 -0.0011 7 6 1.4757 5.8708 -0.8222 8 6 0.9089 7.2504 -0.6012 9 6 1.9756 8.1805 -0.0384 10 8 3.2107 8.0445 -0.7275 11 6 3.1813 8.0013 -2.0817 12 6 3.5523 9.1018 -2.8364 13 6 3.5155 9.0365 -4.2159 14 6 3.1082 7.8766 -4.8554 15 6 2.7345 6.7713 -4.1201 16 6 2.7676 6.8253 -2.7281 17 6 2.3775 5.6606 -1.9074 18 8 2.8107 4.5493 -2.1538 19 6 3.3331 3.6803 -0.0016 20 6 4.0758 2.5219 -0.0011 21 6 3.4408 1.2844 -0.0005 22 8 4.1776 0.1462 0.0006 23 6 5.5129 0.2821 0.1184 24 1 5.9443 1.2591 0.2785 25 6 6.3338 -0.8333 0.0341 26 7 5.8086 -2.0228 -0.1613 27 14 8.1852 -0.6449 0.1968 28 1 8.5724 -0.7756 1.6245 29 1 8.8619 -1.7007 -0.5984 30 1 8.5928 0.6915 -0.3062 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 0.2157 2.3140 -0.0002 35 1 0.2859 4.9432 0.6545 36 1 0.5483 7.6480 -1.5499 37 1 0.0792 7.1905 0.1032 38 1 1.6310 9.2108 -0.1268 39 1 2.1293 7.9481 1.0154 40 1 3.8702 10.0104 -2.3468 41 1 3.8060 9.8966 -4.8008 42 1 3.0833 7.8380 -5.9344 43 1 2.4178 5.8682 -4.6207 44 1 3.8289 4.6398 -0.0016 45 1 5.1546 2.5737 0.0031 46 1 6.3826 -2.8026 -0.2206 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170852138.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:00 Heat of formation + Delta-G solvation = -43.848937 kcal Electronic energy + Delta-G solvation = -32607.509789 eV Core-core repulsion = 28202.232318 eV Total energy + Delta-G solvation = -4405.277471 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.135 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.01435 -39.60011 -38.58032 -37.76242 -37.52477 -36.06934 -34.34201 -32.39881 -31.46342 -30.96157 -30.18598 -29.46857 -28.00310 -26.46672 -25.51943 -24.89961 -24.00032 -22.39339 -21.75183 -21.27874 -20.87405 -18.96487 -18.04474 -17.59909 -17.22420 -16.72876 -16.54345 -16.20471 -15.85234 -15.29387 -15.08955 -14.82985 -14.71518 -14.59457 -14.23499 -14.14558 -13.97983 -13.73366 -13.43293 -13.36111 -13.26449 -12.88627 -12.67460 -12.37069 -12.17055 -12.08891 -11.86859 -11.71455 -11.50724 -11.36920 -11.18946 -11.04833 -10.94526 -10.60008 -10.51640 -10.40443 -10.24431 -9.50271 -9.29778 -9.15677 -9.07880 -8.77471 -8.64546 -7.82150 -6.71854 -6.48702 -3.99398 0.57886 1.01242 1.15510 2.25069 2.51432 3.01607 3.13864 3.14929 3.19623 3.36381 3.70759 3.94764 4.06296 4.21331 4.54884 4.62277 4.71307 4.73245 4.81017 4.90085 5.06973 5.07408 5.11542 5.18195 5.25243 5.31826 5.33534 5.43876 5.51462 5.57936 5.59430 5.68617 5.71718 5.76891 5.83326 5.88376 6.07141 6.14937 6.19859 6.24601 6.31515 6.41116 6.49695 6.57504 6.66891 6.96589 7.10736 7.23402 7.36226 7.39831 7.64396 7.87417 7.93019 8.22139 8.95365 9.66517 10.67969 Molecular weight = 366.13amu Principal moments of inertia in cm(-1) A = 0.010054 B = 0.002900 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.407267 B = 9654.096686 C =11188.261307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.304 6.304 3 C 0.042 3.958 4 C -0.133 4.133 5 C -0.165 4.165 6 C 0.046 3.954 7 C -0.253 4.253 8 C -0.105 4.105 9 C 0.074 3.926 10 O -0.328 6.328 11 C 0.133 3.867 12 C -0.142 4.142 13 C -0.092 4.092 14 C -0.135 4.135 15 C -0.063 4.063 16 C -0.169 4.169 17 C 0.428 3.572 18 O -0.421 6.421 19 C -0.019 4.019 20 C -0.220 4.220 21 C 0.153 3.847 22 O -0.152 6.152 23 C -0.388 4.388 24 H 0.095 0.905 25 C 0.041 3.959 26 N -0.850 5.850 27 Si 0.942 3.058 28 H -0.272 1.272 29 H -0.276 1.276 30 H -0.265 1.265 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.090 0.910 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.058 0.942 39 H 0.102 0.898 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.132 0.868 44 H 0.103 0.897 45 H 0.134 0.866 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.771 21.648 -3.077 24.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.219 6.219 3 C -0.003 4.003 4 C -0.152 4.152 5 C -0.166 4.166 6 C 0.027 3.973 7 C -0.254 4.254 8 C -0.142 4.142 9 C 0.000 4.000 10 O -0.244 6.244 11 C 0.089 3.911 12 C -0.160 4.160 13 C -0.110 4.110 14 C -0.153 4.153 15 C -0.082 4.082 16 C -0.170 4.170 17 C 0.307 3.693 18 O -0.296 6.296 19 C -0.038 4.038 20 C -0.239 4.239 21 C 0.097 3.903 22 O -0.053 6.053 23 C -0.464 4.464 24 H 0.113 0.887 25 C -0.165 4.165 26 N -0.483 5.483 27 Si 0.767 3.233 28 H -0.197 1.197 29 H -0.201 1.201 30 H -0.190 1.190 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.108 0.892 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.076 0.924 39 H 0.120 0.880 40 H 0.150 0.850 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.149 0.851 44 H 0.121 0.879 45 H 0.151 0.849 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.257 20.337 -3.130 22.992 hybrid contribution 0.433 0.470 -0.136 0.653 sum -9.824 20.807 -3.266 23.240 Atomic orbital electron populations 1.22862 0.80579 1.02813 1.00119 1.86225 1.19227 1.26384 1.90015 1.17924 0.89310 0.84396 1.08669 1.20683 0.98039 0.90859 1.05622 1.18009 0.92789 0.91143 1.14698 1.22351 0.93193 0.91083 0.90685 1.20972 1.07393 0.96159 1.00926 1.20877 0.98437 0.92567 1.02334 1.22622 0.82894 0.98029 0.96449 1.85744 1.30824 1.92982 1.14882 1.18705 0.97819 0.91340 0.83202 1.21171 1.03195 0.97679 0.93994 1.21158 0.97886 0.98152 0.93813 1.21161 1.00631 0.93214 1.00247 1.21111 0.96543 0.98626 0.91887 1.21180 1.04338 0.96234 0.95265 1.19084 0.79155 0.87245 0.83824 1.90875 1.46224 1.24934 1.67598 1.20625 0.91969 0.96869 0.94337 1.20762 1.00485 0.90760 1.11931 1.18839 0.88263 0.87520 0.95654 1.83981 1.19569 1.25704 1.76078 1.21483 0.78584 0.95951 1.50402 0.88741 1.25365 1.00617 0.94229 0.96327 1.70042 1.36325 0.98436 1.43467 0.85685 0.80203 0.78725 0.78729 1.19715 1.20125 1.18973 0.93692 0.93719 0.89161 0.86390 0.86077 0.91067 0.89446 0.92384 0.88032 0.85013 0.85353 0.85337 0.85057 0.87873 0.84870 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.81 101.05 0.99 1.49 16 2 O -0.30 -6.86 10.28 -34.19 -0.35 -7.21 16 3 C 0.04 0.96 6.70 -39.12 -0.26 0.70 16 4 C -0.13 -2.54 8.78 -38.98 -0.34 -2.88 16 5 C -0.17 -3.06 4.45 -105.04 -0.47 -3.52 16 6 C 0.05 0.64 9.41 -37.16 -0.35 0.29 16 7 C -0.25 -3.45 4.93 -103.94 -0.51 -3.96 16 8 C -0.10 -1.00 5.30 -28.20 -0.15 -1.15 16 9 C 0.07 0.69 6.80 36.80 0.25 0.94 16 10 O -0.33 -4.17 9.73 -18.27 -0.18 -4.35 16 11 C 0.13 1.69 5.51 -38.66 -0.21 1.47 16 12 C -0.14 -1.44 10.00 -39.52 -0.40 -1.83 16 13 C -0.09 -0.81 10.03 -39.49 -0.40 -1.21 16 14 C -0.13 -1.30 10.03 -39.58 -0.40 -1.69 16 15 C -0.06 -0.78 9.79 -39.29 -0.38 -1.17 16 16 C -0.17 -2.37 4.98 -104.79 -0.52 -2.89 16 17 C 0.43 6.97 5.55 -34.01 -0.19 6.79 16 18 O -0.42 -8.54 13.28 5.11 0.07 -8.47 16 19 C -0.02 -0.40 6.81 -39.11 -0.27 -0.67 16 20 C -0.22 -5.17 9.11 -39.50 -0.36 -5.53 16 21 C 0.15 3.97 6.67 -38.74 -0.26 3.71 16 22 O -0.15 -4.54 9.52 -13.79 -0.13 -4.67 16 23 C -0.39 -11.15 9.45 30.92 0.29 -10.86 16 24 H 0.10 2.51 5.25 -52.49 -0.28 2.23 16 25 C 0.04 1.13 5.49 -17.51 -0.10 1.04 16 26 N -0.85 -25.32 13.67 55.48 0.76 -24.56 16 27 Si 0.94 20.83 29.55 -169.99 -5.02 15.81 16 28 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 29 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 30 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 31 H 0.04 0.60 7.66 -51.93 -0.40 0.21 16 32 H 0.04 0.63 7.66 -51.93 -0.40 0.23 16 33 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.12 1.85 6.28 -52.49 -0.33 1.52 16 35 H 0.12 1.28 7.98 -52.49 -0.42 0.86 16 36 H 0.07 0.67 7.61 -51.93 -0.40 0.27 16 37 H 0.09 0.62 7.93 -51.93 -0.41 0.21 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 42 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 44 H 0.10 2.02 7.30 -52.49 -0.38 1.64 16 45 H 0.13 3.12 5.67 -52.49 -0.30 2.82 16 46 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 385.26 15.07 5.81 5.81 Total: -1.00 -35.53 385.26 -8.48 -44.01 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -5.40 Total: 4.56 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -4.03 Total: -20.93 kcal Atomic # 7 Polarization: -25.32 SS G_CDS: 0.76 Total: -24.56 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.59 Total: -24.70 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.53 -8.48 -44.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170852138.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.164 kcal (2) G-P(sol) polarization free energy of solvation -35.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds