Wall clock time and date at job start Tue Mar 31 2020 05:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35948 * 116.99830 * 2 1 4 4 C 1.38044 * 120.00054 * 359.97329 * 3 2 1 5 5 C 1.40046 * 119.83489 * 180.02562 * 4 3 2 6 6 C 1.46856 * 120.07935 * 180.02562 * 5 4 3 7 7 C 1.35258 * 119.99950 * 224.47717 * 6 5 4 8 8 C 1.50778 * 120.52847 * 195.48401 * 7 6 5 9 9 C 1.52302 * 110.46213 * 106.80351 * 8 7 6 10 10 O 1.42079 * 111.79152 * 44.99554 * 9 8 7 11 11 C 1.35528 * 117.95336 * 45.20088 * 10 9 8 12 12 C 1.38501 * 120.88793 * 103.77265 * 11 10 9 13 13 C 1.38154 * 119.96307 * 179.97438 * 12 11 10 14 14 C 1.38570 * 120.54167 * 0.06331 * 13 12 11 15 15 C 1.37916 * 120.29634 * 359.97160 * 14 13 12 16 16 C 1.39350 * 119.67681 * 0.02562 * 15 14 13 17 17 C 1.42659 * 120.52449 * 15.20057 * 7 6 5 18 18 O 1.21792 * 120.87659 * 3.50882 * 17 7 6 19 19 C 1.40099 * 119.83454 * 0.02562 * 5 4 3 20 20 C 1.37605 * 119.99592 * 359.97438 * 19 5 4 21 21 C 1.39094 * 120.16825 * 0.02562 * 20 19 5 22 22 O 1.35584 * 119.91797 * 180.02562 * 21 20 19 23 23 C 1.34739 * 116.99951 * 5.60983 * 22 21 20 24 24 H 1.07992 * 120.00416 * 4.44520 * 23 22 21 25 25 C 1.38746 * 119.99982 * 184.44348 * 23 22 21 26 26 N 1.31494 * 119.99715 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00068 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.46659 * 90.00239 * 27 25 23 29 29 H 1.48496 * 109.46958 * 210.00084 * 27 25 23 30 30 H 1.48493 * 109.47186 * 330.00414 * 27 25 23 31 31 H 1.08998 * 109.47511 * 300.00337 * 1 2 3 32 32 H 1.08996 * 109.47284 * 60.00201 * 1 2 3 33 33 H 1.09002 * 109.47241 * 180.02562 * 1 2 3 34 34 H 1.07998 * 120.08156 * 0.04937 * 4 3 2 35 35 H 1.07995 * 119.99875 * 44.48058 * 6 5 4 36 36 H 1.08999 * 109.30380 * 227.10639 * 8 7 6 37 37 H 1.09006 * 109.30216 * 346.69913 * 8 7 6 38 38 H 1.09004 * 109.01525 * 165.59651 * 9 8 7 39 39 H 1.09001 * 109.01535 * 284.39683 * 9 8 7 40 40 H 1.07999 * 120.01886 * 359.97438 * 12 11 10 41 41 H 1.07997 * 119.73601 * 180.02562 * 13 12 11 42 42 H 1.08001 * 119.85272 * 179.97438 * 14 13 12 43 43 H 1.08005 * 120.16674 * 180.02562 * 15 14 13 44 44 H 1.08001 * 119.99890 * 180.02562 * 19 5 4 45 45 H 1.08001 * 119.91590 * 180.27734 * 20 19 5 46 46 H 0.97002 * 119.99786 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2943 2.3690 -0.0006 5 6 1.9337 3.6150 -0.0011 6 6 1.1391 4.8501 -0.0011 7 6 1.4757 5.8708 -0.8222 8 6 0.9089 7.2504 -0.6012 9 6 1.9756 8.1805 -0.0384 10 8 3.2107 8.0445 -0.7275 11 6 3.1813 8.0013 -2.0817 12 6 3.5523 9.1018 -2.8364 13 6 3.5155 9.0365 -4.2159 14 6 3.1082 7.8766 -4.8554 15 6 2.7345 6.7713 -4.1201 16 6 2.7676 6.8253 -2.7281 17 6 2.3775 5.6606 -1.9074 18 8 2.8107 4.5493 -2.1538 19 6 3.3331 3.6803 -0.0016 20 6 4.0758 2.5219 -0.0011 21 6 3.4408 1.2844 -0.0005 22 8 4.1776 0.1462 0.0006 23 6 5.5129 0.2821 0.1184 24 1 5.9443 1.2591 0.2785 25 6 6.3338 -0.8333 0.0341 26 7 5.8086 -2.0228 -0.1613 27 14 8.1852 -0.6449 0.1968 28 1 8.5724 -0.7756 1.6245 29 1 8.8619 -1.7007 -0.5984 30 1 8.5928 0.6915 -0.3062 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 0.2157 2.3140 -0.0002 35 1 0.2859 4.9432 0.6545 36 1 0.5483 7.6480 -1.5499 37 1 0.0792 7.1905 0.1032 38 1 1.6310 9.2108 -0.1268 39 1 2.1293 7.9481 1.0154 40 1 3.8702 10.0104 -2.3468 41 1 3.8060 9.8966 -4.8008 42 1 3.0833 7.8380 -5.9344 43 1 2.4178 5.8682 -4.6207 44 1 3.8289 4.6398 -0.0016 45 1 5.1546 2.5737 0.0031 46 1 6.3826 -2.8026 -0.2206 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170852138.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:59 Heat of formation + Delta-G solvation = -66.457693 kcal Electronic energy + Delta-G solvation = -32608.490179 eV Core-core repulsion = 28202.232318 eV Total energy + Delta-G solvation = -4406.257860 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.135 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.05964 -41.22846 -39.84917 -39.29867 -38.60891 -37.66502 -35.53908 -34.35167 -32.53585 -31.95201 -31.31681 -31.07148 -29.29375 -27.81089 -27.37355 -26.12463 -24.99475 -23.51476 -23.29300 -22.34554 -22.23982 -20.11354 -19.92766 -19.27362 -18.16509 -17.95171 -17.69156 -17.25096 -17.04531 -16.88920 -16.65121 -16.37268 -16.01498 -15.65027 -15.58227 -15.30491 -15.28849 -15.16846 -14.97243 -14.90492 -14.42419 -14.10782 -13.82750 -13.67141 -13.55242 -13.11369 -13.06740 -12.93464 -12.82815 -12.80003 -12.62083 -12.52962 -12.19490 -12.08074 -11.98317 -11.82126 -11.43628 -11.16215 -10.90032 -10.52448 -10.17811 -10.01869 -9.60673 -9.48092 -8.50559 -8.46086 -6.14252 -0.57730 0.05245 0.25520 0.54635 0.89951 1.30793 1.41529 1.49357 1.93525 2.14526 2.46899 2.55643 2.77722 2.85242 3.09939 3.16726 3.35800 3.65341 3.86751 3.93572 4.00891 4.02631 4.11817 4.13963 4.24814 4.30260 4.35376 4.37005 4.42385 4.47366 4.53138 4.53817 4.62963 4.69385 4.70543 4.85257 4.90070 4.92239 4.94537 5.05040 5.16446 5.25641 5.31230 5.36572 5.40418 5.44772 5.51770 5.73180 5.74208 5.90661 5.96945 6.54469 6.61403 6.63393 6.92740 7.74331 8.72501 Molecular weight = 366.13amu Principal moments of inertia in cm(-1) A = 0.010054 B = 0.002900 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.407267 B = 9654.096686 C =11188.261307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.345 6.345 3 C 0.033 3.967 4 C -0.129 4.129 5 C -0.128 4.128 6 C 0.030 3.970 7 C -0.230 4.230 8 C -0.101 4.101 9 C 0.065 3.935 10 O -0.351 6.351 11 C 0.126 3.874 12 C -0.143 4.143 13 C -0.077 4.077 14 C -0.133 4.133 15 C -0.081 4.081 16 C -0.203 4.203 17 C 0.418 3.582 18 O -0.476 6.476 19 C -0.034 4.034 20 C -0.222 4.222 21 C 0.101 3.899 22 O -0.213 6.213 23 C -0.418 4.418 24 H 0.098 0.902 25 C -0.020 4.020 26 N -0.914 5.914 27 Si 1.020 2.980 28 H -0.258 1.258 29 H -0.267 1.267 30 H -0.257 1.257 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.164 0.836 35 H 0.177 0.823 36 H 0.076 0.924 37 H 0.126 0.874 38 H 0.089 0.911 39 H 0.114 0.886 40 H 0.156 0.844 41 H 0.167 0.833 42 H 0.155 0.845 43 H 0.120 0.880 44 H 0.110 0.890 45 H 0.119 0.881 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.245 27.340 -3.150 30.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.260 6.260 3 C -0.011 4.011 4 C -0.148 4.148 5 C -0.129 4.129 6 C 0.012 3.988 7 C -0.231 4.231 8 C -0.138 4.138 9 C -0.008 4.008 10 O -0.268 6.268 11 C 0.082 3.918 12 C -0.161 4.161 13 C -0.095 4.095 14 C -0.151 4.151 15 C -0.099 4.099 16 C -0.205 4.205 17 C 0.301 3.699 18 O -0.356 6.356 19 C -0.052 4.052 20 C -0.242 4.242 21 C 0.050 3.950 22 O -0.119 6.119 23 C -0.494 4.494 24 H 0.115 0.885 25 C -0.219 4.219 26 N -0.551 5.551 27 Si 0.838 3.162 28 H -0.183 1.183 29 H -0.191 1.191 30 H -0.181 1.181 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.127 0.873 34 H 0.182 0.818 35 H 0.194 0.806 36 H 0.095 0.905 37 H 0.144 0.856 38 H 0.107 0.893 39 H 0.132 0.868 40 H 0.174 0.826 41 H 0.185 0.815 42 H 0.173 0.827 43 H 0.138 0.862 44 H 0.128 0.872 45 H 0.136 0.864 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.802 26.121 -3.194 29.265 hybrid contribution 0.768 -0.709 -0.256 1.076 sum -12.035 25.412 -3.450 28.329 Atomic orbital electron populations 1.23275 0.77046 1.04965 1.02093 1.86177 1.23054 1.26746 1.90066 1.18268 0.88760 0.85989 1.08124 1.21162 1.00055 0.89492 1.04070 1.18595 0.92391 0.93278 1.08612 1.22652 0.94574 0.88646 0.92939 1.21437 1.04606 0.98169 0.98865 1.21012 0.99509 0.89418 1.03861 1.22921 0.81629 0.99662 0.96588 1.85713 1.32883 1.93187 1.15048 1.18895 0.98050 0.91477 0.83425 1.21504 1.02333 0.97725 0.94554 1.21631 0.95454 0.98750 0.93656 1.21489 0.99499 0.92541 1.01549 1.21214 0.97516 0.99465 0.91692 1.21112 1.07354 0.96189 0.95822 1.19896 0.78301 0.87177 0.84544 1.90870 1.48513 1.27206 1.68982 1.20712 0.93263 0.95867 0.95377 1.20819 1.00211 0.91451 1.11702 1.19453 0.89888 0.87536 0.98143 1.83949 1.19952 1.27495 1.80547 1.21869 0.79172 0.96563 1.51760 0.88502 1.26644 1.06023 0.93501 0.95688 1.70186 1.38319 0.99454 1.47184 0.84590 0.73148 0.79059 0.79383 1.18266 1.19112 1.18059 0.91053 0.91992 0.87278 0.81843 0.80581 0.90519 0.85597 0.89307 0.86805 0.82612 0.81547 0.82711 0.86186 0.87185 0.86366 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 9.81 113.37 1.11 1.72 16 2 O -0.35 -16.23 10.28 -78.99 -0.81 -17.04 16 3 C 0.03 1.60 6.70 22.57 0.15 1.75 16 4 C -0.13 -4.77 8.78 22.66 0.20 -4.57 16 5 C -0.13 -4.55 4.45 -20.13 -0.09 -4.64 16 6 C 0.03 0.72 9.41 23.84 0.22 0.94 16 7 C -0.23 -5.48 4.93 -19.42 -0.10 -5.57 16 8 C -0.10 -1.41 5.30 29.64 0.16 -1.25 16 9 C 0.07 0.90 6.80 71.75 0.49 1.39 16 10 O -0.35 -7.89 9.73 -88.31 -0.86 -8.75 16 11 C 0.13 2.85 5.51 22.87 0.13 2.98 16 12 C -0.14 -2.34 10.00 22.31 0.22 -2.12 16 13 C -0.08 -1.03 10.03 22.33 0.22 -0.80 16 14 C -0.13 -2.18 10.03 22.27 0.22 -1.96 16 15 C -0.08 -1.91 9.79 22.46 0.22 -1.69 16 16 C -0.20 -5.47 4.98 -19.97 -0.10 -5.57 16 17 C 0.42 13.29 5.55 25.88 0.14 13.43 16 18 O -0.48 -19.86 13.28 -4.64 -0.06 -19.93 16 19 C -0.03 -1.43 6.81 22.57 0.15 -1.27 16 20 C -0.22 -11.30 9.11 22.33 0.20 -11.09 16 21 C 0.10 5.69 6.67 22.82 0.15 5.85 16 22 O -0.21 -14.11 9.52 -6.02 -0.06 -14.17 16 23 C -0.42 -26.37 9.45 67.94 0.64 -25.73 16 24 H 0.10 5.71 5.25 -2.91 -0.02 5.69 16 25 C -0.02 -1.24 5.49 84.86 0.47 -0.77 16 26 N -0.91 -59.19 13.67 21.63 0.30 -58.89 16 27 Si 1.02 45.65 29.55 68.60 2.03 47.68 16 28 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 29 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 30 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 31 H 0.07 1.73 7.66 -2.39 -0.02 1.71 16 32 H 0.06 1.61 7.66 -2.39 -0.02 1.59 16 33 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 34 H 0.16 4.46 6.28 -2.91 -0.02 4.45 16 35 H 0.18 2.48 7.98 -2.91 -0.02 2.45 16 36 H 0.08 1.07 7.61 -2.39 -0.02 1.05 16 37 H 0.13 0.88 7.93 -2.38 -0.02 0.86 16 38 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.11 1.29 8.14 -2.39 -0.02 1.28 16 40 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 41 H 0.17 0.98 8.06 -2.91 -0.02 0.95 16 42 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 43 H 0.12 2.97 8.06 -2.91 -0.02 2.95 16 44 H 0.11 4.42 7.30 -2.91 -0.02 4.39 16 45 H 0.12 6.16 5.67 -2.91 -0.02 6.14 16 46 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 Total: -1.00 -91.62 385.26 6.39 -85.24 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: 1.03 Total: 24.85 kcal Atomic # 6 Polarization: -43.80 SS G_CDS: 4.82 Total: -38.98 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: 0.30 Total: -58.89 kcal Atomic # 8 Polarization: -58.10 SS G_CDS: -1.79 Total: -59.89 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -91.62 6.39 -85.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170852138.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.778 kcal (2) G-P(sol) polarization free energy of solvation -91.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds