Wall clock time and date at job start Tue Mar 31 2020 05:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31126 * 126.55484 * 2 1 4 4 C 1.34492 * 105.61910 * 179.97438 * 3 2 1 5 5 C 1.50703 * 126.29014 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47222 * 345.05561 * 5 4 3 7 7 N 1.46495 * 109.47269 * 225.05121 * 5 4 3 8 8 C 1.34778 * 119.99843 * 85.00052 * 7 5 4 9 9 O 1.21280 * 120.00363 * 0.02562 * 8 7 5 10 10 C 1.50705 * 119.99742 * 179.97438 * 8 7 5 11 11 S 1.81002 * 109.46737 * 179.97438 * 10 8 7 12 12 C 1.76199 * 99.99939 * 180.02562 * 11 10 8 13 13 H 1.08007 * 119.99858 * 359.97438 * 12 11 10 14 14 C 1.38803 * 120.00364 * 180.02562 * 12 11 10 15 15 N 1.31630 * 119.99422 * 359.97438 * 14 12 11 16 16 Si 1.86790 * 120.00222 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47598 * 59.99710 * 16 14 12 18 18 H 1.48501 * 109.47430 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47245 * 299.99594 * 16 14 12 20 20 C 1.50703 * 109.47055 * 105.05218 * 5 4 3 21 21 C 1.38241 * 119.98680 * 79.72716 * 20 5 4 22 22 C 1.38213 * 120.01304 * 179.72831 * 21 20 5 23 23 C 1.38356 * 119.98365 * 0.54359 * 22 21 20 24 24 Cl 1.73608 * 120.00937 * 179.74991 * 23 22 21 25 25 C 1.38344 * 119.97762 * 359.73056 * 23 22 21 26 26 C 1.38217 * 119.98462 * 359.97438 * 25 23 22 27 27 N 1.29948 * 107.42516 * 0.02562 * 4 3 2 28 28 O 1.21303 * 110.24669 * 359.97438 * 27 4 3 29 29 H 1.09003 * 109.47573 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47036 * 300.01785 * 1 2 3 31 31 H 1.09003 * 109.47076 * 60.01708 * 1 2 3 32 32 H 0.97001 * 120.00418 * 264.99990 * 7 5 4 33 33 H 1.08997 * 109.47217 * 299.99838 * 10 8 7 34 34 H 1.08999 * 109.46918 * 60.00338 * 10 8 7 35 35 H 0.97006 * 119.99871 * 180.02562 * 15 14 12 36 36 H 1.07999 * 119.99131 * 0.02562 * 21 20 5 37 37 H 1.08004 * 120.00935 * 180.27448 * 22 21 20 38 38 H 1.07998 * 120.01010 * 179.97438 * 25 23 22 39 39 H 1.08004 * 119.99574 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2879 1.0533 0.0000 4 6 3.5440 0.5727 0.0006 5 6 4.8111 1.3885 0.0003 6 1 4.5792 2.4199 -0.2655 7 7 5.7502 0.8318 -0.9767 8 6 5.6691 1.1950 -2.2720 9 8 4.8191 1.9831 -2.6289 10 6 6.6355 0.6227 -3.2769 11 16 6.2716 1.2982 -4.9163 12 6 7.5131 0.4840 -5.8652 13 1 8.2010 -0.1959 -5.3845 14 6 7.6077 0.7171 -7.2302 15 7 6.7696 1.5461 -7.8158 16 14 8.9234 -0.1466 -8.2362 17 1 8.7384 -1.6166 -8.1353 18 1 8.8126 0.2693 -9.6575 19 1 10.2650 0.2203 -7.7158 20 6 5.4330 1.3512 1.3725 21 6 6.1747 0.2527 1.7653 22 6 6.7500 0.2203 3.0216 23 6 6.5739 1.2826 3.8903 24 17 7.2907 1.2397 5.4709 25 6 5.8267 2.3791 3.4988 26 6 5.2571 2.4131 2.2400 27 7 3.4645 -0.7243 0.0003 28 8 2.3028 -1.0736 0.0002 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5141 0.8899 31 1 -0.3633 0.5136 -0.8902 32 1 6.4303 0.2018 -0.6913 33 1 7.6541 0.8868 -2.9927 34 1 6.5345 -0.4623 -3.3009 35 1 6.8355 1.7088 -8.7699 36 1 6.3088 -0.5782 1.0885 37 1 7.3332 -0.6360 3.3267 38 1 5.6886 3.2085 4.1767 39 1 4.6741 3.2692 1.9340 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180620121.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:45 Heat of formation + Delta-G solvation = 27.255501 kcal Electronic energy + Delta-G solvation = -27008.018529 eV Core-core repulsion = 22877.178144 eV Total energy + Delta-G solvation = -4130.840384 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 367.054 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -46.68047 -41.39068 -40.21394 -37.86092 -37.16626 -36.12845 -34.60854 -34.26488 -32.73880 -32.20369 -30.74507 -29.72769 -28.03041 -27.56379 -24.90878 -24.16202 -23.43798 -22.38728 -21.44465 -20.00026 -19.31386 -18.72397 -18.55949 -17.94375 -17.47356 -16.89802 -16.86727 -16.49430 -16.23964 -15.99723 -15.52026 -15.30812 -15.07637 -14.59941 -14.55149 -14.46081 -14.20405 -14.17372 -14.00986 -13.63555 -13.20260 -13.13694 -12.99175 -12.88476 -12.71551 -12.61089 -12.51107 -12.35955 -12.15784 -11.87915 -11.78355 -11.24762 -11.15069 -10.93341 -10.66452 -10.33709 -10.16491 -9.82529 -8.70713 -8.36806 -6.15644 -0.18447 0.13600 0.16836 1.01080 1.04577 1.22825 1.38702 1.42708 1.42947 1.53246 1.89525 1.97709 2.24694 2.32655 2.75038 2.97437 3.00815 3.25820 3.31566 3.59851 3.79196 3.80562 3.87744 4.12648 4.20632 4.21309 4.39405 4.42447 4.45333 4.55035 4.62307 4.63242 4.82899 4.94863 4.95755 5.03016 5.10049 5.11574 5.31622 5.39565 5.59852 6.17225 6.19662 6.97312 7.04358 7.09634 8.72192 Molecular weight = 367.05amu Principal moments of inertia in cm(-1) A = 0.009127 B = 0.002463 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3067.200505 B =11364.300652 C =13591.975261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.186 3.814 3 N -0.504 5.504 4 C 0.155 3.845 5 C 0.287 3.713 6 H 0.113 0.887 7 N -0.705 5.705 8 C 0.540 3.460 9 O -0.550 6.550 10 C -0.129 4.129 11 S -0.144 6.144 12 C -0.548 4.548 13 H 0.083 0.917 14 C 0.014 3.986 15 N -0.911 5.911 16 Si 0.999 3.001 17 H -0.263 1.263 18 H -0.278 1.278 19 H -0.261 1.261 20 C -0.101 4.101 21 C -0.092 4.092 22 C -0.107 4.107 23 C -0.033 4.033 24 Cl -0.063 7.063 25 C -0.106 4.106 26 C -0.085 4.085 27 N -0.386 5.386 28 O 0.073 5.927 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.111 0.889 32 H 0.418 0.582 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.272 0.728 36 H 0.140 0.860 37 H 0.155 0.845 38 H 0.158 0.842 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.631 -4.530 27.944 29.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.034 4.034 3 N -0.239 5.239 4 C -0.120 4.120 5 C 0.179 3.821 6 H 0.131 0.869 7 N -0.361 5.361 8 C 0.326 3.674 9 O -0.426 6.426 10 C -0.280 4.280 11 S 0.083 5.917 12 C -0.696 4.696 13 H 0.101 0.899 14 C -0.191 4.191 15 N -0.547 5.547 16 Si 0.820 3.180 17 H -0.187 1.187 18 H -0.203 1.203 19 H -0.186 1.186 20 C -0.102 4.102 21 C -0.110 4.110 22 C -0.125 4.125 23 C -0.060 4.060 24 Cl -0.034 7.034 25 C -0.125 4.125 26 C -0.104 4.104 27 N -0.094 5.094 28 O 0.014 5.986 29 H 0.142 0.858 30 H 0.143 0.857 31 H 0.129 0.871 32 H 0.257 0.743 33 H 0.135 0.865 34 H 0.126 0.874 35 H 0.081 0.919 36 H 0.158 0.842 37 H 0.173 0.827 38 H 0.176 0.824 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.233 -3.229 27.328 28.453 hybrid contribution 1.717 -1.447 -0.378 2.277 sum -5.516 -4.676 26.949 27.903 Atomic orbital electron populations 1.20775 0.76283 1.07792 1.06932 1.29896 1.00594 0.79493 0.93369 1.71826 1.00209 1.30241 1.21584 1.26127 0.95749 0.88772 1.01358 1.17616 0.81276 0.96183 0.86982 0.86875 1.45803 1.35305 1.48737 1.06238 1.20220 0.83983 0.80325 0.82873 1.90723 1.37322 1.35112 1.79426 1.23356 1.02255 1.04744 0.97639 1.85570 1.46626 1.61221 0.98279 1.23165 1.18790 1.31520 0.96101 0.89868 1.26130 0.99053 0.95805 0.98093 1.70173 1.37620 1.35133 1.11753 0.85003 0.77826 0.78577 0.76595 1.18733 1.20319 1.18569 1.19592 1.00282 0.96794 0.93568 1.21030 0.96150 0.97434 0.96425 1.21220 1.00166 0.98576 0.92574 1.21182 0.99611 0.97134 0.88054 1.98388 1.82213 1.98496 1.24311 1.21258 0.96608 0.98020 0.96567 1.21166 0.98448 0.98061 0.92713 1.74507 0.98340 1.15409 1.21128 1.85246 1.11286 1.36292 1.65785 0.85823 0.85697 0.87070 0.74275 0.86539 0.87397 0.91929 0.84238 0.82732 0.82434 0.83316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.52 10.51 71.23 0.75 0.23 16 2 C 0.19 3.96 8.51 88.38 0.75 4.71 16 3 N -0.50 -14.14 11.55 -303.21 -3.50 -17.64 16 4 C 0.15 4.47 6.99 138.46 0.97 5.44 16 5 C 0.29 7.66 2.71 43.50 0.12 7.78 16 6 H 0.11 3.38 7.44 -2.39 -0.02 3.36 16 7 N -0.71 -19.77 5.01 -449.68 -2.25 -22.02 16 8 C 0.54 20.58 7.80 87.66 0.68 21.26 16 9 O -0.55 -25.85 15.52 -3.03 -0.05 -25.90 16 10 C -0.13 -5.19 6.16 71.24 0.44 -4.75 16 11 S -0.14 -8.04 20.57 -56.49 -1.16 -9.20 16 12 C -0.55 -31.35 9.50 67.96 0.65 -30.70 16 13 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 14 C 0.01 0.80 5.49 84.86 0.47 1.27 16 15 N -0.91 -55.98 13.22 21.65 0.29 -55.69 16 16 Si 1.00 43.60 29.55 68.60 2.03 45.63 16 17 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 18 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 19 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 20 C -0.10 -2.06 4.94 -19.86 -0.10 -2.16 16 21 C -0.09 -1.63 9.04 22.26 0.20 -1.43 16 22 C -0.11 -1.65 9.83 22.29 0.22 -1.43 16 23 C -0.03 -0.52 6.32 22.32 0.14 -0.38 16 24 Cl -0.06 -0.92 28.96 -2.72 -0.08 -1.00 16 25 C -0.11 -1.59 9.83 22.29 0.22 -1.37 16 26 C -0.09 -1.48 9.67 22.27 0.22 -1.27 16 27 N -0.39 -10.92 12.15 -60.31 -0.73 -11.65 16 28 O 0.07 1.80 11.31 74.83 0.85 2.65 16 29 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.42 9.11 6.88 -92.71 -0.64 8.47 16 33 H 0.12 4.15 8.14 -2.40 -0.02 4.13 16 34 H 0.11 3.99 8.14 -2.40 -0.02 3.98 16 35 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 36 H 0.14 2.26 6.93 -2.91 -0.02 2.24 16 37 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 38 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 39 H 0.15 2.24 8.04 -2.91 -0.02 2.22 16 Total: -1.00 -81.80 378.71 1.59 -80.21 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.48 Total: 17.39 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: 5.72 Total: -2.79 kcal Atomic # 7 Polarization: -100.80 SS G_CDS: -6.20 Total: -107.00 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: 0.80 Total: -23.25 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: -8.04 SS G_CDS: -1.16 Total: -9.20 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -0.08 Total: -1.00 kcal Total: -81.80 1.59 -80.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180620121.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.464 kcal (2) G-P(sol) polarization free energy of solvation -81.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds