Wall clock time and date at job start Tue Mar 31 2020 06:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86809 * 119.99906 * 2 1 4 4 H 1.48500 * 109.46953 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46734 * 299.99661 * 3 2 1 6 6 H 1.48496 * 109.47224 * 59.99519 * 3 2 1 7 7 C 1.37875 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99794 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99954 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46898 * 179.97438 * 9 7 2 11 11 O 1.42902 * 109.47051 * 179.97438 * 10 9 7 12 12 C 1.35985 * 117.00359 * 180.02562 * 11 10 9 13 13 C 1.38779 * 120.49220 * 0.02562 * 12 11 10 14 14 C 1.38795 * 118.44752 * 179.97438 * 13 12 11 15 15 C 1.38068 * 119.35498 * 359.97438 * 14 13 12 16 16 N 1.31973 * 120.94934 * 0.02562 * 15 14 13 17 17 C 1.32262 * 121.69358 * 359.97438 * 16 15 14 18 18 N 1.39578 * 119.72833 * 180.02562 * 17 16 15 19 19 C 1.34777 * 120.00047 * 0.02562 * 18 17 16 20 20 O 1.21583 * 119.99887 * 359.97438 * 19 18 17 21 21 N 1.34776 * 119.99965 * 180.02562 * 19 18 17 22 22 C 1.46507 * 119.99831 * 180.02562 * 21 19 18 23 23 C 1.54341 * 110.81886 * 267.96872 * 22 21 19 24 24 C 1.51374 * 105.16965 * 215.42951 * 23 22 21 25 25 C 1.38489 * 130.39051 * 197.19246 * 24 23 22 26 26 C 1.38103 * 120.21816 * 179.97438 * 25 24 23 27 27 C 1.38256 * 119.93286 * 0.02562 * 26 25 24 28 28 C 1.38105 * 119.93046 * 359.97438 * 27 26 25 29 29 C 1.38216 * 109.75644 * 17.18688 * 24 23 22 30 30 C 1.51364 * 109.76171 * 0.02562 * 29 24 23 31 31 H 0.96996 * 119.99954 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.46851 * 59.99835 * 9 7 2 33 33 H 1.08999 * 109.47206 * 299.99315 * 9 7 2 34 34 H 1.09004 * 109.47129 * 59.99983 * 10 9 7 35 35 H 1.09001 * 109.47498 * 299.99813 * 10 9 7 36 36 H 1.08006 * 120.78166 * 0.25214 * 13 12 11 37 37 H 1.08001 * 120.31769 * 180.02562 * 14 13 12 38 38 H 1.07996 * 119.52331 * 180.02562 * 15 14 13 39 39 H 0.97004 * 120.00112 * 180.02562 * 18 17 16 40 40 H 0.97004 * 120.00200 * 359.97438 * 21 19 18 41 41 H 1.09000 * 110.72815 * 31.58770 * 22 21 19 42 42 H 1.09004 * 110.30709 * 334.34799 * 23 22 21 43 43 H 1.08996 * 110.30830 * 96.50324 * 23 22 21 44 44 H 1.08007 * 119.89423 * 359.97438 * 25 24 23 45 45 H 1.07993 * 120.03777 * 179.97438 * 26 25 24 46 46 H 1.08001 * 120.03429 * 179.97438 * 27 26 25 47 47 H 1.08010 * 119.88828 * 180.02562 * 28 27 26 48 48 H 1.09001 * 110.30641 * 223.88626 * 30 29 24 49 49 H 1.09005 * 110.38332 * 101.77864 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 8 1.5309 -4.8996 0.0011 12 6 2.2715 -6.0401 0.0018 13 6 3.6580 -5.9794 0.0023 14 6 4.3719 -7.1697 0.0035 15 6 3.6880 -8.3691 0.0046 16 7 2.3686 -8.3981 0.0040 17 6 1.6492 -7.2882 0.0029 18 7 0.2556 -7.3667 0.0029 19 6 -0.3516 -8.5700 0.0046 20 8 0.3146 -9.5871 0.0056 21 7 -1.6972 -8.6458 0.0040 22 6 -2.3572 -9.9537 0.0064 23 6 -2.6493 -10.4234 -1.4345 24 6 -3.9680 -11.1619 -1.3508 25 6 -4.5567 -12.0502 -2.2352 26 6 -5.7853 -12.6096 -1.9439 27 6 -6.4307 -12.2819 -0.7659 28 6 -5.8451 -11.3962 0.1173 29 6 -4.6130 -10.8343 -0.1731 30 6 -3.7723 -9.8529 0.6149 31 1 -0.4850 0.8400 0.0004 32 1 0.6247 -2.5570 -0.8897 33 1 0.6241 -2.5568 0.8903 34 1 2.8720 -3.6042 0.8905 35 1 2.8720 -3.6043 -0.8895 36 1 4.1696 -5.0282 0.0064 37 1 5.4518 -7.1577 0.0044 38 1 4.2408 -9.2969 0.0059 39 1 -0.2759 -6.5553 0.0017 40 1 -2.2287 -7.8343 0.0028 41 1 -1.7560 -10.6883 0.5422 42 1 -2.7379 -9.5657 -2.1014 43 1 -1.8621 -11.0930 -1.7810 44 1 -4.0535 -12.3065 -3.1559 45 1 -6.2420 -13.3017 -2.6358 46 1 -7.3917 -12.7181 -0.5366 47 1 -6.3496 -11.1410 1.0375 48 1 -3.7514 -10.1330 1.6681 49 1 -4.1625 -8.8415 0.5009 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188762669.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:33 Heat of formation + Delta-G solvation = 3.182577 kcal Electronic energy + Delta-G solvation = -31140.963587 eV Core-core repulsion = 26840.425490 eV Total energy + Delta-G solvation = -4300.538097 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.168 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.01708 -40.47692 -39.36213 -37.80008 -36.50925 -34.69878 -33.48543 -33.30422 -31.72925 -31.55725 -30.55915 -29.21348 -28.10945 -27.62711 -25.42580 -23.95668 -22.91953 -22.50383 -21.45847 -21.28046 -20.90306 -20.55332 -18.80759 -18.07977 -17.47951 -16.66718 -16.25995 -16.12519 -15.95599 -15.84598 -15.67960 -15.33614 -14.97475 -14.72235 -14.57569 -14.20201 -13.90673 -13.74408 -13.61602 -13.45668 -13.19978 -13.11210 -12.84911 -12.69435 -12.42106 -12.00938 -11.96836 -11.86505 -11.53146 -11.40914 -11.09247 -11.05706 -11.02247 -10.71383 -10.68425 -10.39273 -10.05576 -9.79110 -9.41232 -9.30304 -9.13718 -9.10429 -9.06103 -8.80493 -8.53950 -7.62844 -6.19504 -4.24261 1.04399 1.09098 1.28174 1.47622 2.39268 3.17769 3.20758 3.28093 3.31085 3.45304 3.53904 3.84321 4.02562 4.10730 4.31601 4.32866 4.67236 4.69740 4.72312 4.76894 4.84033 4.89269 4.97497 5.09686 5.17609 5.21082 5.27057 5.29787 5.36240 5.48392 5.49060 5.55883 5.69423 5.80390 5.85594 5.87069 5.89918 6.06668 6.11418 6.19686 6.21093 6.33539 6.36446 6.37946 6.53898 6.58500 6.69685 6.83087 7.34650 7.51335 7.62375 7.71625 7.86590 8.13139 8.25592 8.61122 8.81232 9.40855 10.91962 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.009889 B = 0.001813 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2830.627982 B =15444.014764 C =17844.372301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.026 3.974 10 C 0.066 3.934 11 O -0.317 6.317 12 C 0.065 3.935 13 C -0.147 4.147 14 C -0.163 4.163 15 C 0.076 3.924 16 N -0.441 5.441 17 C 0.347 3.653 18 N -0.661 5.661 19 C 0.698 3.302 20 O -0.534 6.534 21 N -0.739 5.739 22 C 0.169 3.831 23 C -0.098 4.098 24 C -0.089 4.089 25 C -0.107 4.107 26 C -0.120 4.120 27 C -0.123 4.123 28 C -0.105 4.105 29 C -0.096 4.096 30 C -0.089 4.089 31 H 0.263 0.737 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.145 0.855 37 H 0.134 0.866 38 H 0.156 0.844 39 H 0.421 0.579 40 H 0.399 0.601 41 H 0.106 0.894 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.120 0.880 45 H 0.123 0.877 46 H 0.123 0.877 47 H 0.120 0.880 48 H 0.084 0.916 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.277 -22.869 -0.985 24.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.008 4.008 11 O -0.229 6.229 12 C 0.013 3.987 13 C -0.173 4.173 14 C -0.184 4.184 15 C -0.080 4.080 16 N -0.156 5.156 17 C 0.113 3.887 18 N -0.310 5.310 19 C 0.398 3.602 20 O -0.405 6.405 21 N -0.395 5.395 22 C 0.063 3.937 23 C -0.136 4.136 24 C -0.089 4.089 25 C -0.125 4.125 26 C -0.138 4.138 27 C -0.141 4.141 28 C -0.123 4.123 29 C -0.096 4.096 30 C -0.127 4.127 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.162 0.838 37 H 0.152 0.848 38 H 0.173 0.827 39 H 0.258 0.742 40 H 0.233 0.767 41 H 0.124 0.876 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.138 0.862 45 H 0.141 0.859 46 H 0.141 0.859 47 H 0.138 0.862 48 H 0.103 0.897 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.515 -24.478 -0.972 25.624 hybrid contribution 0.498 2.704 -0.090 2.751 sum -7.017 -21.774 -1.062 22.901 Atomic orbital electron populations 1.69969 1.06103 1.26968 1.49647 1.24983 0.94917 0.99432 0.94804 0.86430 0.80004 0.83191 0.77769 1.19607 1.20815 1.20804 1.20991 0.93122 0.90125 1.52343 0.92264 1.19130 0.94148 0.88960 0.98852 1.23385 0.97228 0.80320 0.99835 1.86095 1.36234 1.12892 1.87704 1.19540 0.91121 0.86979 1.01049 1.21590 0.92168 1.00346 1.03232 1.21884 1.01170 0.92543 1.02812 1.22409 0.88793 0.97855 0.98973 1.67623 1.07731 1.26787 1.13466 1.17471 0.83862 0.86901 1.00497 1.42482 1.04081 1.08928 1.75540 1.15927 0.81947 0.83864 0.78483 1.91029 1.62973 1.32950 1.53526 1.45133 1.04792 1.08939 1.80654 1.21363 0.92256 0.84705 0.95364 1.21544 0.94000 0.99939 0.98108 1.20537 0.96564 0.96953 0.94889 1.20656 0.95618 0.96967 0.99268 1.21052 0.95169 1.00171 0.97359 1.21038 1.00009 0.98443 0.94567 1.20621 0.94519 0.97334 0.99803 1.20409 0.95043 0.98046 0.96111 1.21300 0.92770 0.98836 0.99752 0.92703 0.95376 0.95360 0.92959 0.92950 0.83760 0.84837 0.82669 0.74220 0.76679 0.87583 0.89575 0.89894 0.86176 0.85921 0.85910 0.86156 0.89722 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.38 13.29 55.43 0.74 -24.65 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.53 -14.01 9.11 -34.44 -0.31 -14.32 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.03 0.64 5.34 -27.88 -0.15 0.49 16 10 C 0.07 1.29 4.70 37.16 0.17 1.47 16 11 O -0.32 -5.75 9.39 -19.69 -0.18 -5.93 16 12 C 0.06 1.07 6.72 -38.92 -0.26 0.81 16 13 C -0.15 -2.12 9.14 -39.18 -0.36 -2.48 16 14 C -0.16 -2.03 10.10 -39.44 -0.40 -2.42 16 15 C 0.08 1.04 11.17 -17.55 -0.20 0.85 16 16 N -0.44 -7.42 7.87 -12.23 -0.10 -7.52 16 17 C 0.35 5.74 7.45 -154.45 -1.15 4.59 16 18 N -0.66 -9.58 5.40 -15.68 -0.08 -9.66 16 19 C 0.70 10.00 8.53 -86.92 -0.74 9.26 16 20 O -0.53 -9.50 14.24 5.29 0.08 -9.43 16 21 N -0.74 -7.55 5.14 -57.28 -0.29 -7.84 16 22 C 0.17 1.61 3.45 -66.51 -0.23 1.38 16 23 C -0.10 -0.93 6.49 -26.85 -0.17 -1.10 16 24 C -0.09 -0.83 6.14 -104.21 -0.64 -1.47 16 25 C -0.11 -0.92 10.04 -39.54 -0.40 -1.31 16 26 C -0.12 -0.91 10.05 -39.62 -0.40 -1.31 16 27 C -0.12 -0.91 10.05 -39.62 -0.40 -1.31 16 28 C -0.10 -0.83 10.04 -39.54 -0.40 -1.23 16 29 C -0.10 -0.84 6.14 -104.21 -0.64 -1.48 16 30 C -0.09 -0.68 6.48 -26.84 -0.17 -0.85 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.97 7.69 -51.93 -0.40 0.57 16 35 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16 36 H 0.14 1.94 6.44 -52.48 -0.34 1.60 16 37 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.42 5.35 8.06 -40.82 -0.33 5.02 16 40 H 0.40 3.10 8.44 -40.82 -0.34 2.76 16 41 H 0.11 1.19 7.54 -51.93 -0.39 0.79 16 42 H 0.09 0.81 8.08 -51.93 -0.42 0.39 16 43 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 45 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 46 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 47 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 48 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.09 0.58 7.80 -51.93 -0.41 0.18 16 LS Contribution 411.49 15.07 6.20 6.20 Total: -1.00 -33.23 411.49 -12.40 -45.64 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -6.80 Total: 6.51 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -6.94 Total: -8.87 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 0.26 Total: -49.67 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.11 Total: -15.36 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.23 -12.40 -45.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188762669.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.818 kcal (2) G-P(sol) polarization free energy of solvation -33.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds