Wall clock time and date at job start Tue Mar 31 2020 06:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38023 * 120.00182 * 2 1 4 4 C 1.38210 * 120.21413 * 179.74548 * 3 2 1 5 5 C 1.38989 * 120.22522 * 0.54632 * 4 3 2 6 6 N 1.39956 * 119.99810 * 179.72136 * 5 4 3 7 7 C 1.34785 * 120.00044 * 215.40361 * 6 5 4 8 8 O 1.21591 * 119.99912 * 355.23941 * 7 6 5 9 9 N 1.34778 * 119.99728 * 175.23882 * 7 6 5 10 10 C 1.40184 * 119.99533 * 180.02562 * 9 7 6 11 11 C 1.40406 * 125.97635 * 359.97438 * 10 9 7 12 12 C 1.35242 * 107.86830 * 179.97438 * 11 10 9 13 13 N 1.34966 * 107.85950 * 0.27043 * 12 11 10 14 14 C 1.46499 * 125.97220 * 179.73168 * 13 12 11 15 15 C 1.50706 * 109.46922 * 124.99699 * 14 13 12 16 16 H 1.08004 * 120.00176 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99993 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99737 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99992 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46927 * 60.00317 * 19 17 15 21 21 H 1.48494 * 109.46936 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47130 * 300.00540 * 19 17 15 23 23 N 1.31214 * 125.97407 * 179.97438 * 10 9 7 24 24 C 1.38588 * 120.00357 * 359.45340 * 5 4 3 25 25 C 1.39485 * 119.77747 * 0.27111 * 24 5 4 26 26 C 1.47839 * 120.11224 * 180.02562 * 25 24 5 27 27 N 1.31223 * 125.72247 * 314.17199 * 26 25 24 28 28 C 1.34160 * 108.64222 * 179.88825 * 27 26 25 29 29 C 1.34544 * 107.84191 * 0.36918 * 28 27 26 30 30 O 1.34427 * 125.72753 * 134.47119 * 26 25 24 31 31 H 1.08994 * 109.47474 * 264.37726 * 1 2 3 32 32 H 1.09004 * 109.46798 * 24.37695 * 1 2 3 33 33 H 1.09003 * 109.46953 * 144.37218 * 1 2 3 34 34 H 1.07998 * 119.89182 * 0.02562 * 3 2 1 35 35 H 1.08010 * 119.88660 * 180.29402 * 4 3 2 36 36 H 0.97002 * 120.00140 * 35.41344 * 6 5 4 37 37 H 0.96998 * 120.00216 * 0.02562 * 9 7 6 38 38 H 1.08006 * 126.06393 * 359.97438 * 11 10 9 39 39 H 1.08004 * 126.06882 * 180.02562 * 12 11 10 40 40 H 1.09001 * 109.47028 * 244.99415 * 14 13 12 41 41 H 1.08998 * 109.47706 * 4.99792 * 14 13 12 42 42 H 0.97005 * 119.99476 * 179.97438 * 18 17 15 43 43 H 1.08002 * 120.11374 * 180.28959 * 24 5 4 44 44 H 1.08005 * 126.07713 * 180.14134 * 28 27 26 45 45 H 1.08002 * 126.36399 * 179.80647 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1953 0.0000 4 6 3.5793 1.2004 0.0053 5 6 4.2834 0.0021 -0.0008 6 7 5.6829 0.0129 -0.0013 7 6 6.3639 -0.9300 -0.6823 8 8 5.7659 -1.8395 -1.2243 9 7 7.7077 -0.8647 -0.7626 10 6 8.4159 -1.8452 -1.4714 11 6 7.8558 -2.9446 -2.1416 12 6 8.8665 -3.6499 -2.6984 13 7 10.0241 -3.0283 -2.3901 14 6 11.3658 -3.4606 -2.7890 15 6 12.0644 -2.3337 -3.5054 16 1 11.5596 -1.3897 -3.6489 17 6 13.3483 -2.5075 -3.9769 18 7 13.9632 -3.6567 -3.8018 19 14 14.2145 -1.1104 -4.8643 20 1 14.3206 0.0613 -3.9581 21 1 15.5744 -1.5486 -5.2688 22 1 13.4368 -0.7334 -6.0718 23 7 9.7180 -1.8959 -1.6247 24 6 3.5998 -1.2034 -0.0007 25 6 2.2049 -1.2088 -0.0003 26 6 1.4682 -2.4905 0.0003 27 7 1.7297 -3.5249 -0.7636 28 6 0.8542 -4.5007 -0.4787 29 6 0.0287 -4.0464 0.4817 30 8 0.4144 -2.7898 0.7794 31 1 -0.3634 -0.1007 1.0226 32 1 -0.3633 0.9361 -0.4242 33 1 -0.3633 -0.8353 -0.5987 34 1 1.6555 2.1296 0.0004 35 1 4.1140 2.1389 0.0101 36 1 6.1629 0.6989 0.4887 37 1 8.1848 -0.1394 -0.3300 38 1 6.8044 -3.1844 -2.2017 39 1 8.7655 -4.5528 -3.2824 40 1 11.9369 -3.7371 -1.9027 41 1 11.2878 -4.3208 -3.4539 42 1 14.8664 -3.7790 -4.1339 43 1 4.1452 -2.1356 -0.0007 44 1 0.8163 -5.4761 -0.9410 45 1 -0.7905 -4.5882 0.9309 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191550410.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:48 Heat of formation + Delta-G solvation = 118.811435 kcal Electronic energy + Delta-G solvation = -31008.699429 eV Core-core repulsion = 26609.635032 eV Total energy + Delta-G solvation = -4399.064397 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.143 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.49466 -41.09411 -40.21038 -39.00976 -35.58416 -34.98607 -34.77123 -33.38470 -32.42902 -31.87548 -30.73463 -29.39175 -29.28111 -27.07950 -26.33951 -24.34886 -23.36201 -22.84248 -22.35635 -21.76435 -20.97228 -20.35728 -19.91187 -18.49191 -18.09382 -17.10208 -16.88539 -16.57105 -16.40015 -16.01259 -15.66986 -15.37154 -15.24827 -14.90072 -14.49636 -14.39977 -14.23938 -14.06517 -13.89248 -13.69369 -13.41200 -12.82942 -12.77120 -12.53305 -12.33664 -12.22393 -12.03356 -11.79614 -11.65940 -11.55705 -11.07997 -10.86567 -10.74914 -10.62615 -10.37986 -10.25303 -10.10192 -9.74263 -9.68677 -9.51243 -8.78879 -8.62483 -8.34166 -8.10689 -7.43917 -6.23528 -4.28616 0.49067 1.03142 1.38732 2.16569 2.42818 2.48741 2.61339 3.02051 3.26038 3.29246 3.33338 3.40535 3.50658 3.79235 3.81140 4.18580 4.34265 4.47099 4.57168 4.71076 4.73869 4.81479 4.95572 5.11318 5.12195 5.26377 5.27946 5.40484 5.48810 5.52758 5.61942 5.67283 5.78315 5.86864 5.97358 5.99894 6.14847 6.20166 6.22314 6.50900 6.53776 6.66773 6.87092 6.96432 7.08325 7.43641 7.49356 7.68477 7.76157 7.91862 8.05898 8.41134 8.63717 8.80618 9.36841 10.85117 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.016694 B = 0.001783 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.859132 B =15700.813275 C =16989.330760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.072 4.072 3 C -0.102 4.102 4 C -0.121 4.121 5 C 0.164 3.836 6 N -0.684 5.684 7 C 0.710 3.290 8 O -0.543 6.543 9 N -0.637 5.637 10 C 0.272 3.728 11 C -0.284 4.284 12 C 0.052 3.948 13 N -0.319 5.319 14 C 0.259 3.741 15 C -0.529 4.529 16 H 0.068 0.932 17 C 0.062 3.938 18 N -0.895 5.895 19 Si 0.908 3.092 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.275 1.275 23 N -0.305 5.305 24 C -0.067 4.067 25 C -0.005 4.005 26 C 0.237 3.763 27 N -0.459 5.459 28 C -0.039 4.039 29 C -0.081 4.081 30 O -0.196 6.196 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.410 0.590 37 H 0.409 0.591 38 H 0.162 0.838 39 H 0.168 0.832 40 H 0.045 0.955 41 H 0.057 0.943 42 H 0.268 0.732 43 H 0.154 0.846 44 H 0.186 0.814 45 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.938 6.713 11.764 31.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.074 4.074 3 C -0.121 4.121 4 C -0.142 4.142 5 C 0.069 3.931 6 N -0.333 5.333 7 C 0.410 3.590 8 O -0.416 6.416 9 N -0.286 5.286 10 C 0.018 3.982 11 C -0.316 4.316 12 C -0.098 4.098 13 N -0.101 5.101 14 C 0.141 3.859 15 C -0.567 4.567 16 H 0.086 0.914 17 C -0.141 4.141 18 N -0.533 5.533 19 Si 0.735 3.265 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.200 1.200 23 N -0.136 5.136 24 C -0.088 4.088 25 C -0.007 4.007 26 C 0.033 3.967 27 N -0.187 5.187 28 C -0.179 4.179 29 C -0.151 4.151 30 O -0.082 6.082 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.246 0.754 37 H 0.244 0.756 38 H 0.179 0.821 39 H 0.186 0.814 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.172 0.828 44 H 0.203 0.797 45 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -27.511 6.276 11.012 30.290 hybrid contribution -0.187 0.738 0.176 0.781 sum -27.698 7.014 11.188 30.685 Atomic orbital electron populations 1.20808 0.90603 1.02873 1.02730 1.19925 0.96310 0.91726 0.99404 1.20678 0.93148 0.97259 1.00987 1.21065 0.94396 0.96712 1.02060 1.17181 0.81487 0.93354 1.01073 1.42444 1.04426 1.32699 1.53708 1.15610 0.81105 0.82584 0.79715 1.90932 1.67201 1.33919 1.49573 1.41277 1.04361 1.28173 1.54825 1.18732 0.90471 0.91191 0.97768 1.21530 1.01017 0.98720 1.10297 1.22566 0.85938 0.99888 1.01392 1.49070 1.08008 1.16215 1.36806 1.19744 0.73352 0.96372 0.96419 1.21219 0.99478 0.99236 1.36781 0.91360 1.24947 0.96890 0.96331 0.95935 1.69911 1.13798 1.23616 1.46015 0.86380 0.78326 0.81826 0.79923 1.19964 1.21057 1.20045 1.77319 1.10744 1.07297 1.18219 1.21325 0.91747 0.99167 0.96608 1.16899 0.91372 0.86063 1.06368 1.23774 0.87366 0.95674 0.89916 1.70858 1.25019 0.99639 1.23188 1.23475 0.94328 1.00650 0.99471 1.25149 1.03859 0.83701 1.02421 1.84578 1.40619 1.29991 1.53007 0.90621 0.90985 0.91839 0.84737 0.84897 0.75405 0.75648 0.82052 0.81448 0.93720 0.92495 0.92280 0.82817 0.79690 0.76691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 8.98 36.01 0.32 -0.47 16 2 C -0.07 -0.65 5.92 -104.20 -0.62 -1.27 16 3 C -0.10 -0.75 9.65 -39.67 -0.38 -1.14 16 4 C -0.12 -0.95 9.96 -39.31 -0.39 -1.34 16 5 C 0.16 1.74 6.28 -83.74 -0.53 1.21 16 6 N -0.68 -6.85 5.34 -14.26 -0.08 -6.93 16 7 C 0.71 10.24 8.37 -86.91 -0.73 9.51 16 8 O -0.54 -9.70 10.93 5.29 0.06 -9.64 16 9 N -0.64 -9.57 5.45 -15.50 -0.08 -9.65 16 10 C 0.27 5.42 8.11 -154.37 -1.25 4.17 16 11 C -0.28 -5.71 9.61 -39.83 -0.38 -6.09 16 12 C 0.05 1.05 11.44 -17.24 -0.20 0.86 16 13 N -0.32 -7.43 3.67 -62.56 -0.23 -7.66 16 14 C 0.26 6.58 6.26 -5.19 -0.03 6.55 16 15 C -0.53 -14.72 9.23 -34.44 -0.32 -15.03 16 16 H 0.07 1.96 7.81 -52.48 -0.41 1.55 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 18 N -0.90 -25.35 13.29 55.43 0.74 -24.61 16 19 Si 0.91 21.38 29.54 -169.99 -5.02 16.36 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 N -0.30 -6.96 12.42 31.44 0.39 -6.57 16 24 C -0.07 -0.86 8.43 -38.99 -0.33 -1.18 16 25 C -0.01 -0.06 5.87 -105.00 -0.62 -0.68 16 26 C 0.24 2.93 6.64 -13.88 -0.09 2.84 16 27 N -0.46 -6.28 11.33 -11.72 -0.13 -6.41 16 28 C -0.04 -0.39 11.87 -17.84 -0.21 -0.60 16 29 C -0.08 -0.62 12.17 29.43 0.36 -0.26 16 30 O -0.20 -2.00 9.71 4.07 0.04 -1.96 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.37 8.05 -51.93 -0.42 -0.05 16 33 H 0.06 0.51 7.03 -51.93 -0.37 0.15 16 34 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 35 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 36 H 0.41 2.53 8.84 -40.82 -0.36 2.17 16 37 H 0.41 4.77 8.84 -40.82 -0.36 4.41 16 38 H 0.16 3.22 5.91 -52.48 -0.31 2.91 16 39 H 0.17 2.79 8.06 -52.48 -0.42 2.36 16 40 H 0.04 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 42 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.15 2.36 6.26 -52.49 -0.33 2.03 16 44 H 0.19 1.27 8.06 -52.48 -0.42 0.84 16 45 H 0.22 0.65 8.06 -52.49 -0.42 0.22 16 LS Contribution 392.93 15.07 5.92 5.92 Total: -1.00 -36.03 392.93 -8.96 -44.99 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -5.07 Total: 7.50 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -5.49 Total: -1.32 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: 0.60 Total: -61.84 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.10 Total: -11.60 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.03 -8.96 -44.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191550410.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.801 kcal (2) G-P(sol) polarization free energy of solvation -36.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds